Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006766

Physical Location & Seq

Genomic Coordinates Reverse (-)

17051911 .. 17055192

Gene Structure 3282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGATCGATGTGAAGCTGGGCCTGATTTTGAGAAAAACGAGTTCAGGAAATGGTTTAGATCTCTGCTAGTTGAACGTGGAGGCTCATTCTCTGATGTTTTCAGATCAAAACATCCTGAAAGGAAAGATGCATTCACATGTTGGTCCTCAAGTAGTGGAGCAGAACAATTTAACTACGGTTCGAGGATTGATCATATCTTAGTTGCTGGGTCATGCTTGCATCAGGACGAAGATAAGCAGGGGCATAGTTTTCTTGCTTGCCATGTCAAGGAATGTGACATATTAACAGAGTATAAGCGTTTTAAGAATGAAAATATGCCAACAAGGTGGAAAGGTGGATTGGTTACAAAATTTAAGGGATCAGACCACGTACCTGTATTCATTAGTTTTGATGATTTACCAGACATCCCGGAACACAGCACGCCGCCATTAGCGTCAAGATATCTTCCCATGATTTACGGTTTCCAACAAACTCTTGTATCGGTATTTAAGAAGAGGCGGGCCAATGAAGAAGCCAAAGCCATTGAGGTGTCATGTTCATCATCAACTCAAAGTAATACTTCATCAATTTGTGGGGATATTTCTACAGGACCACTGAGAAATTGTGGTTCGATGGGAATTTCACTTGAGAAATCTTGTTCTTTTGAGAACAAATCCACTTCCGGCGTTACAGAAGCAGAAACGGTGGCAGCAACAGGTTCCATTGATAACCTTAGTGATGGAATACGTGCATCATCAGTTAGAGCTTTGAATATCTCTAGAGATGGAGACAGGAAAAAAGCAAGGAAAATCCAATCATCTCAGCTTTCTCTCAAGTCCTTTTTCACTACAAACTCAAAAGTAAACAATGTCGAGGATAGTTCTTCTTCCTATGTTTCCTCCAGTCCCAGCTCCCAAGTAGAAAGCATCACAGAACCGAATGTTTCAGGCAAAGAAGACAGTGAACCGACTACTTCAACACAGGAACAGGATCAAACAGGTTCTTCAGCTAAACAAAAAAACGATGCAGCTTTAATGGAGTGGCAAAGAATACAGAACCTAATGCAAAACAGCATACCTCTCTGCAAAGGACATAAAGAAGCTTGTGTTGCTAGGGTCGTCAAGAAACCAGGTCCCACATTCGGACGCAGATTCTACGTCTGCTCTCGAGCTGAGGGACCTTCCTCTAATCCAGAAGCAAACTGTGGTTATTTCAAATGGGCTTCATCAAAATTCAGAGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Exo_endo_phos zf-GRF

Protein Analysis

408

Amino Acids

45.16

Weight (kDa)

8.47

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_GRF	PF06839	353 - 403	3.8e-11	GRF zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36050 AT4G36050 AT4G36050 AT4G36050 AT4G36050
fragaria_vesca	FvH4_1g11761 FvH4_1g11761 FvH4_1g11761 FvH4_1g11761 FvH4_1g11761
malus_domestica	MD02G1131900.v1.1
prunus_persica	Prupe.7G168600_v2.0.a1 Prupe.7G168600_v2.0.a1 Prupe.7G168600_v2.0.a1
pyrus_communis	pycom02g10280
rosa_chinensis	RchiOBHm_Chr2g0099381
rosa_laevigata	RLG00000016877
rosa_multiflora	Rmu_sc0002487.1_g000007
rosa_roxburghii	Rroxscaffold_2G00143120
rosa_rugosa	Rorug02G0079000 Rorug02G0079100
rosa_samantha	Rh2AG129000 Rh2BG132000 Rh2CG132800 Rh2DG133000
rosa_wichuraiana	Rw2G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	425, 499
AclWI	GGATC	3 cut(s)	12, 367, 978
AcsI	RAATTY	3 cut(s)	350, 618, 1211
AcuI	CTGAAG	1 cut(s)	969
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	268, 1121
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	74, 751, 957, 1195
AjnI	CCWGG	1 cut(s)	1108
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	8 cut(s)	17, 746, 805, 891, 989, 1010, 1082, 1151
AluI	AGCT	8 cut(s)	17, 746, 805, 891, 989, 1010, 1082, 1151
Alw26I	GTCTC	2 cut(s)	762, 1212
AlwI	GGATC	3 cut(s)	12, 367, 978
Ama87I	CYCGRG	1 cut(s)	1146
AoxI	GGCC	2 cut(s)	20, 501
ApeKI	GCWGC	2 cut(s)	689, 1007
ApoI	RAATTY	3 cut(s)	350, 618, 1211
AspS9I	GGNCC	6 cut(s)	20, 144, 501, 590, 1112, 1157
AsuC2I	CCSGG	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	1146
AvaII	GGWCC	4 cut(s)	144, 590, 1112, 1157
BaeI	ACNNNNGTAYC	2 cut(s)	462, 495
BbsI	GAAGAC	1 cut(s)	942
BbvCI	CCTCAGC	1 cut(s)	1152
BbvI	GCAGC	2 cut(s)	701, 1019
BccI	CCATC	3 cut(s)	607, 713, 758
BciT130I	CCWGG	1 cut(s)	1110
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	2 cut(s)	762, 1212
BfaI	CTAG	3 cut(s)	68, 759, 1092
BfmI	CTRYAG	1 cut(s)	585
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	3 cut(s)	425, 690, 1008
BlsI	GCNGC	3 cut(s)	426, 691, 1009
Bme1390I	CCNGG	2 cut(s)	410, 1110
Bme18I	GGWCC	4 cut(s)	144, 590, 1112, 1157
BmeT110I	CYCGRG	1 cut(s)	1146
BmgT120I	GGNCC	6 cut(s)	20, 144, 501, 590, 1112, 1157
BmiI	GGNNCC	3 cut(s)	700, 1114, 1158
BmrFI	CCNGG	2 cut(s)	410, 1110
BmsI	GCATC	5 cut(s)	118, 229, 740, 915, 994
BpiI	GAAGAC	1 cut(s)	942
BpmI	CTGGAG	1 cut(s)	865
Bpu10I	CCTNAGC	1 cut(s)	1152
BpuEI	CTTGAG	3 cut(s)	133, 647, 797
BpuMI	CCSGG	1 cut(s)	410
Bsa29I	ATCGAT	1 cut(s)	7
BsaAI	YACGTR	2 cut(s)	370, 728
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 1121
Bse1I	ACTGG	1 cut(s)	882
BseBI	CCWGG	1 cut(s)	1110
BseCI	ATCGAT	1 cut(s)	7
BseGI	GGATG	2 cut(s)	112, 405
BseLI	CCNNNNNNNGG	2 cut(s)	268, 1121
BseMII	CTCAG	3 cut(s)	587, 815, 1143
BseNI	ACTGG	1 cut(s)	882
BseXI	GCAGC	2 cut(s)	701, 1019
BseYI	CCCAGC	3 cut(s)	17, 206, 887
BshFI	GGCC	2 cut(s)	22, 503
BshVI	ATCGAT	1 cut(s)	7
BsiHKCI	CYCGRG	1 cut(s)	1146
BsiSI	CCGG	2 cut(s)	410, 663
BslFI	GGGAC	3 cut(s)	870, 1098, 1170
BslI	CCNNNNNNNGG	2 cut(s)	268, 1121
BsmAI	GTCTC	2 cut(s)	762, 1212
BsmFI	GGGAC	3 cut(s)	870, 1098, 1170
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	22, 503
BsoBI	CYCGRG	1 cut(s)	1146
Bsp143I	GATC	6 cut(s)	4, 59, 104, 190, 359, 970
BspACI	CCGC	2 cut(s)	425, 499
BspANI	GGCC	2 cut(s)	22, 503
BspCNI	CTCAG	3 cut(s)	588, 814, 1144
BspDI	ATCGAT	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	700, 1114, 1158
BspPI	GGATC	3 cut(s)	12, 367, 978
BsrI	ACTGG	1 cut(s)	882
BssMI	GATC	6 cut(s)	4, 59, 104, 190, 359, 970
Bst2UI	CCWGG	1 cut(s)	1110
Bst4CI	ACNGT	5 cut(s)	179, 461, 685, 941, 1184
Bst6I	CTCTTC	1 cut(s)	488
BstBAI	YACGTR	2 cut(s)	370, 728
BstC8I	GCNNGC	4 cut(s)	218, 259, 422, 501
BstDEI	CTNAG	5 cut(s)	199, 596, 713, 801, 1152
BstF5I	GGATG	2 cut(s)	112, 405
BstKTI	GATC	6 cut(s)	7, 62, 107, 193, 362, 973
BstMAI	GTCTC	2 cut(s)	762, 1212
BstMBI	GATC	6 cut(s)	4, 59, 104, 190, 359, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	1088
BstNI	CCWGG	1 cut(s)	1110
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	408, 1108
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	701, 1019
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	1 cut(s)	59
BstXI	CCANNNNNNTGG	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	59
Bsu15I	ATCGAT	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	22, 503
BsuTUI	ATCGAT	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	112, 405
BtsIMutI	CAGTG	2 cut(s)	593, 946
Cac8I	GCNNGC	4 cut(s)	218, 259, 422, 501
Cfr13I	GGNCC	6 cut(s)	20, 144, 501, 590, 1112, 1157
ClaI	ATCGAT	1 cut(s)	7
CseI	GACGC	2 cut(s)	423, 1134
CsiI	ACCWGGT	1 cut(s)	1108
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	5 cut(s)	138, 213, 263, 451, 534
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	5 cut(s)	199, 596, 713, 801, 1152
DpnI	GATC	6 cut(s)	6, 61, 106, 192, 361, 972
DpnII	GATC	6 cut(s)	4, 59, 104, 190, 359, 970
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	443
Eco47I	GGWCC	4 cut(s)	144, 590, 1112, 1157
Eco57I	CTGAAG	1 cut(s)	969
Eco88I	CYCGRG	1 cut(s)	1146
EcoO109I	RGGNCCY	2 cut(s)	1112, 1157
EcoRII	CCWGG	1 cut(s)	1108
EcoRV	GATATC	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	5 cut(s)	141, 216, 266, 454, 537
FalI	AAGNNNNNCTT	2 cut(s)	544, 576
FaqI	GGGAC	3 cut(s)	870, 1098, 1170
FatI	CATG	5 cut(s)	137, 212, 262, 450, 533
FauI	CCCGC	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	425, 690, 1008
FokI	GGATG	2 cut(s)	99, 392
Fsp4HI	GCNGC	3 cut(s)	425, 690, 1008
FspBI	CTAG	3 cut(s)	68, 759, 1092
GluI	GCNGC	3 cut(s)	425, 690, 1008
GsaI	CCCAGC	3 cut(s)	21, 210, 891
GsuI	CTGGAG	1 cut(s)	865
HaeIII	GGCC	2 cut(s)	22, 503
HapII	CCGG	2 cut(s)	410, 663
HgaI	GACGC	2 cut(s)	423, 1134
Hin1II	CATG	5 cut(s)	141, 216, 266, 454, 537
HindIII	AAGCTT	1 cut(s)	1080
HinfI	GANTC	1 cut(s)	1131
HpaII	CCGG	2 cut(s)	410, 663
Hpy166II	GTNNAC	2 cut(s)	844, 944
Hpy188I	TCNGA	5 cut(s)	94, 104, 364, 1124, 1217
Hpy188III	TCNNGA	8 cut(s)	46, 116, 224, 438, 759, 1102, 1146, 1172
Hpy8I	GTNNAC	2 cut(s)	844, 944
HpyAV	CCTTC	1 cut(s)	1170
HpyCH4III	ACNGT	5 cut(s)	179, 461, 685, 941, 1184
HpyCH4IV	ACGT	4 cut(s)	76, 369, 727, 1137
HpyCH4V	TGCA	6 cut(s)	131, 220, 731, 1007, 1045, 1065
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1088
HpyF3I	CTNAG	5 cut(s)	199, 596, 713, 801, 1152
HpySE526I	ACGT	4 cut(s)	76, 369, 727, 1137
Hsp92II	CATG	5 cut(s)	141, 216, 266, 454, 537
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	4, 59, 104, 190, 359, 970
LmnI	GCTCC	2 cut(s)	158, 896
Lsp1109I	GCAGC	2 cut(s)	701, 1019
LweI	GCATC	5 cut(s)	118, 229, 740, 915, 994
MabI	ACCWGGT	1 cut(s)	1108
MaeI	CTAG	3 cut(s)	68, 759, 1092
MaeII	ACGT	4 cut(s)	76, 369, 727, 1137
MaeIII	GTNAC	3 cut(s)	275, 343, 667
MalI	GATC	6 cut(s)	6, 61, 106, 192, 361, 972
MboI	GATC	6 cut(s)	4, 59, 104, 190, 359, 970
MboII	GAAGA	8 cut(s)	242, 437, 505, 521, 855, 858, 947, 975
MflI	RGATCY	1 cut(s)	59
MluCI	AATT	6 cut(s)	167, 350, 567, 601, 618, 1211
MmeI	TCCRAC	1 cut(s)	490
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	6 cut(s)	171, 284, 303, 354, 489, 1013
MslI	CAYNNNNRTG	2 cut(s)	136, 527
MspI	CCGG	2 cut(s)	410, 663
MspR9I	CCNGG	2 cut(s)	410, 1110
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	1110
MwoI	GCNNNNNNNGC	1 cut(s)	1088
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	6 cut(s)	4, 59, 104, 190, 359, 970
NlaIII	CATG	5 cut(s)	141, 216, 266, 454, 537
NlaIV	GGNNCC	3 cut(s)	700, 1114, 1158
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	1146
PciI	ACATGT	1 cut(s)	137
PctI	GAATGC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	1131
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	3 cut(s)	426, 691, 1009
Ppu21I	YACGTR	2 cut(s)	370, 728
PpuMI	RGGWCCY	2 cut(s)	1112, 1157
PscI	ACATGT	1 cut(s)	137
Psp5II	RGGWCCY	2 cut(s)	1112, 1157
Psp6I	CCWGG	1 cut(s)	1108
PspFI	CCCAGC	3 cut(s)	17, 206, 887
PspGI	CCWGG	1 cut(s)	1108
PspN4I	GGNNCC	3 cut(s)	700, 1114, 1158
PspPI	GGNCC	6 cut(s)	20, 144, 501, 590, 1112, 1157
PspPPI	RGGWCCY	2 cut(s)	1112, 1157
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	2 cut(s)	136, 527
SaqAI	TTAA	6 cut(s)	171, 284, 303, 354, 489, 1013
SatI	GCNGC	3 cut(s)	425, 690, 1008
Sau3AI	GATC	6 cut(s)	4, 59, 104, 190, 359, 970
Sau96I	GGNCC	6 cut(s)	20, 144, 501, 590, 1112, 1157
ScrFI	CCNGG	2 cut(s)	410, 1110
SexAI	ACCWGGT	1 cut(s)	1108
SfaNI	GCATC	5 cut(s)	118, 229, 740, 915, 994
SfcI	CTRYAG	1 cut(s)	585
Sfr274I	CTCGAG	1 cut(s)	1146
SinI	GGWCC	4 cut(s)	144, 590, 1112, 1157
SlaI	CTCGAG	1 cut(s)	1146
SmiMI	CAYNNNNRTG	2 cut(s)	136, 527
SmlI	CTYRAG	4 cut(s)	148, 626, 812, 1146
SmoI	CTYRAG	4 cut(s)	148, 626, 812, 1146
Sse9I	AATT	6 cut(s)	167, 350, 567, 601, 618, 1211
SsiI	CCGC	2 cut(s)	425, 499
SspMI	CTAG	3 cut(s)	68, 759, 1092
StyD4I	CCNGG	2 cut(s)	408, 1108
TaaI	ACNGT	5 cut(s)	179, 461, 685, 941, 1184
TaiI	ACGT	4 cut(s)	79, 372, 730, 1140
TaqI	TCGA	5 cut(s)	7, 182, 611, 852, 1147
TasI	AATT	6 cut(s)	167, 350, 567, 601, 618, 1211
TauI	GCSGC	1 cut(s)	427
TfiI	GAWTC	1 cut(s)	1131
Tru1I	TTAA	6 cut(s)	171, 284, 303, 354, 489, 1013
Tru9I	TTAA	6 cut(s)	171, 284, 303, 354, 489, 1013
TscAI	CASTG	2 cut(s)	600, 946
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	689, 1007
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	6 cut(s)	324, 370, 522, 528, 552, 1194
TspRI	CASTG	2 cut(s)	600, 946
VpaK11BI	GGWCC	4 cut(s)	144, 590, 1112, 1157
XapI	RAATTY	3 cut(s)	350, 618, 1211
XbaI	TCTAGA	1 cut(s)	758
XceI	RCATGY	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	1146
XspI	CTAG	3 cut(s)	68, 759, 1092
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.