FvH4_1g11761

DNA-(Apurinic or apyrimidinic site) lyase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
6438558 .. 6442699
4142 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11761.t4

Sequence Viewer

Length: 1509 bp
ATGAGGTGGCGCTGCCGGTGTCGGCGGAGGAAGGGTTCAGCGGTTTGCTCGGAGAGGTGGCGGCGGTGGCGGAAGGGCTTGAGGAGTTTTCGAATGAGGAGATGCTTCAGGTTGATGGAGAGGGACGGTGTGTTGTTACTGATCATCATCATTTTGTTCTGTTCAATTTGTATGGACCAAGAGCTGGAGGTGACGATACGGAAAGGATTGAGTTTAAGCTCAAGTTTTATAAGATGTTACAGATGGGAGTCTCTCCTGCGTCAGGGGAGGAGGATAATTGTTGTTGGTGATCTGAACATTGCACCCACTTGTTTAGATCGTTGTGAAGCAGAACCAGAATTCGAGAACAATCAATTCAGAAGATGGTTTAGATCCATGTTGGTGGAAAATAGAGGCTCTTTCTTTGATGTTTTCAGATCAAAACATCCTGATAGAAGAGAAGCATACACATGCTGGTCACAAAGTAGTGGTGCTGAAGAATTTAATTATGGCTCCAGAATTGATCACATTCTTTGTGCTGGTTTATGTTTGCACCAAGAGCAGGACCTTCAAAACCATAACTTTGTAGCTTGCCACGTCAAGGAGTGTGACATATTGACACAGTATAAACGGTGGAAACCAGGAAATTCACTGAGGTGGAAGGGAGGGCAGAGGACCATCAAACTTGAAGGCTCAGATCATGCACCTGTTTACACAAGTCTACTGGAAATGCCTAGTATCTGCCAACATAGTACCCCACGTTTATCTGCTAGATACATTCCAATGGTTCGTGGTCTCCAGCAAACCCTTGTTTCAATGTTAATGAAGAGGAAAGTTGCTGAACAAGTGGACGGACATCAAGAGAGTTGCAGTGAGACAGAGGCAAGCTCGCCTGACCAATGTGGTACACCCTGTTCTTCTTCAAGCCAAGAATTTGAAGTTCTCGGTTCAAGAACAATCGAGAGTTCCAGCAGTTTTGCTAATGAGGCTGCTTGTAACACCTTGGTTACCTCATGTAGTGAGCCTACCAAAACAATGCCAGGAAATGAAACCAAGAAAAAAGCAAAAGGCAGTCAACTGTCCCAACTCTCATTGAGATCATTTTTCCAGAAAAGCTCAATCCCTAGCAAGAGCAACAGTGCAAACAGTGGGATTGATGTTCCACCAACTCAGATAGATATTTTAGAATCTCATCATCTGCCAAATGAAACTTCCATTCCAGAGAATCAAAACGGTAATCTAGAGCAGTGTGAATTGCACTCTAGTGCATCAATTCGGGATGGGAATCAAGATGAACTCATTGCCAGTTCAAAGAAAGAGAAGAATAGTTTAGCTTTACTGGAGTGGCAAAGGTTACATCAAGTCATGCAGAATAGCATACCACTTTGCAAGGGTCATAAAGAACCTTGTGTTGCTCGGGTTGTGAAGAAACAAGGTCCTAATTTTGGTCGCAGATTTTATGTTTGCGCACGTGCTGAGACAACAGTGATGCAAGTGCAGAAGGCAAGGGGGGATGAACTAACTAACTAG

Protein Analysis

503

Amino Acids

57.36

Weight (kDa)

9.1

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 32 - 142 2.1e-08 Endonuclease/Exonuclease/phosphatase family
Zn_ribbon_GRF PF06839 422 - 471 4e-13 GRF zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
Acc16I TGCGCA 1 cut(s) 1447
AccB7I CCANNNNNTGG 1 cut(s) 184
AccI GTMKAC 1 cut(s) 700
AciI CCGC 5 cut(s) 25, 41, 61, 64, 70
AclWI GGATC 1 cut(s) 366
AcsI RAATTY 4 cut(s) 338, 479, 625, 911
AcuI CTGAAG 2 cut(s) 91, 495
AcvI CACGTG 1 cut(s) 1451
AfaI GTAC 2 cut(s) 733, 886
AfiI CCNNNNNNNGG 5 cut(s) 184, 262, 541, 580, 1424
AgsI TTSAA 8 cut(s) 165, 551, 668, 795, 903, 917, 930, 1290
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 2 cut(s) 619, 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 1174, 1206
AleI CACNNNNGTG 2 cut(s) 634, 1242
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
AluBI AGCT 6 cut(s) 184, 219, 569, 867, 1095, 1313
AluI AGCT 6 cut(s) 184, 219, 569, 867, 1095, 1313
Alw26I GTCTC 4 cut(s) 255, 779, 848, 1451
AlwI GGATC 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 1395
ApeKI GCWGC 2 cut(s) 12, 968
ApoI RAATTY 4 cut(s) 338, 479, 625, 911
AspLEI GCGC 2 cut(s) 12, 1448
AspS9I GGNCC 4 cut(s) 175, 544, 654, 1415
AsuHPI GGTGA 2 cut(s) 202, 299
AsuII TTCGAA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 1395
AvaII GGWCC 4 cut(s) 175, 544, 654, 1415
BbrPI CACGTG 1 cut(s) 1451
BbvI GCAGC 1 cut(s) 955
BccI CCATC 5 cut(s) 109, 237, 357, 665, 1253
BciT130I CCWGG 2 cut(s) 621, 1020
BclI TGATCA 2 cut(s) 141, 502
BcoDI GTCTC 4 cut(s) 255, 779, 848, 1451
BfaI CTAG 6 cut(s) 714, 750, 1104, 1220, 1242, 1507
BfoI RGCGCY 1 cut(s) 13
BisI GCNGC 3 cut(s) 13, 62, 969
BlsI GCNGC 3 cut(s) 14, 63, 970
Bme1390I CCNGG 2 cut(s) 621, 1020
Bme18I GGWCC 4 cut(s) 175, 544, 654, 1415
BmeT110I CYCGRG 1 cut(s) 1395
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 4 cut(s) 175, 544, 654, 1415
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 2 cut(s) 621, 1020
BmsI GCATC 3 cut(s) 92, 1256, 1458
BplI GAGNNNNNCTC 2 cut(s) 851, 883
BpmI CTGGAG 4 cut(s) 206, 478, 761, 1340
Bpu14I TTCGAA 1 cut(s) 91
BpuEI CTTGAG 2 cut(s) 100, 205
BsaAI YACGTR 1 cut(s) 1451
BsaBI GATNNNNATC 2 cut(s) 146, 1263
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 1 cut(s) 981
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 262, 541, 580, 1424
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 3 cut(s) 708, 1284, 1323
Bse3DI GCAATG 2 cut(s) 297, 1278
Bse8I GATNNNNATC 2 cut(s) 146, 1263
BseBI CCWGG 2 cut(s) 621, 1020
BseDI CCNNGG 1 cut(s) 981
BseGI GGATG 3 cut(s) 424, 1264, 1498
BseJI GATNNNNATC 2 cut(s) 146, 1263
BseLI CCNNNNNNNGG 5 cut(s) 184, 262, 541, 580, 1424
BseMI GCAATG 2 cut(s) 297, 1278
BseMII CTCAG 4 cut(s) 623, 687, 1163, 1446
BseNI ACTGG 3 cut(s) 708, 1284, 1323
BseRI GAGGAG 3 cut(s) 97, 112, 283
BseXI GCAGC 1 cut(s) 955
BsgI GTGCAG 1 cut(s) 1496
BsiHKCI CYCGRG 1 cut(s) 1395
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 2 cut(s) 137, 1045
BslI CCNNNNNNNGG 5 cut(s) 184, 262, 541, 580, 1424
BsmAI GTCTC 4 cut(s) 255, 779, 848, 1451
BsmFI GGGAC 2 cut(s) 137, 1045
Bso31I GGTCTC 1 cut(s) 779
BsoBI CYCGRG 1 cut(s) 1395
Bsp119I TTCGAA 1 cut(s) 91
Bsp143I GATC 8 cut(s) 141, 289, 316, 371, 416, 502, 676, 1076
BspACI CCGC 5 cut(s) 25, 41, 61, 64, 70
BspCNI CTCAG 4 cut(s) 624, 686, 1162, 1447
BspLI GGNNCC 1 cut(s) 493
BspPI GGATC 1 cut(s) 366
BspT104I TTCGAA 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 779
BsrDI GCAATG 2 cut(s) 297, 1278
BsrFI RCCGGY 1 cut(s) 15
BsrI ACTGG 3 cut(s) 708, 1284, 1323
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 981
BssMI GATC 8 cut(s) 141, 289, 316, 371, 416, 502, 676, 1076
BssT1I CCWWGG 1 cut(s) 981
Bst2UI CCWGG 2 cut(s) 621, 1020
Bst4CI ACNGT 8 cut(s) 128, 603, 612, 1059, 1118, 1127, 1214, 1465
Bst6I CTCTTC 2 cut(s) 430, 800
BstBAI YACGTR 1 cut(s) 1451
BstBI TTCGAA 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 571, 865, 869
BstDEI CTNAG 4 cut(s) 632, 673, 1149, 1455
BstEII GGTNACC 1 cut(s) 985
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 3 cut(s) 424, 1264, 1498
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 2 cut(s) 12, 1448
BstKTI GATC 8 cut(s) 144, 292, 319, 374, 419, 505, 679, 1079
BstMAI GTCTC 4 cut(s) 255, 779, 848, 1451
BstMBI GATC 8 cut(s) 141, 289, 316, 371, 416, 502, 676, 1076
BstMWI GCNNNNNNNGC 3 cut(s) 67, 538, 965
BstNI CCWGG 2 cut(s) 621, 1020
BstNSI RCATGY 1 cut(s) 453
BstPI GGTNACC 1 cut(s) 985
BstSCI CCNGG 2 cut(s) 619, 1018
BstV1I GCAGC 1 cut(s) 955
BstX2I RGATCY 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 1 cut(s) 371
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 3 cut(s) 424, 1264, 1498
BtsI GCAGTG 2 cut(s) 856, 1232
BtsIMutI CAGTG 6 cut(s) 629, 856, 1123, 1132, 1232, 1470
Cac8I GCNNGC 3 cut(s) 571, 865, 869
CfoI GCGC 2 cut(s) 12, 1448
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 4 cut(s) 175, 544, 654, 1415
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 732, 885
CviAII CATG 5 cut(s) 376, 450, 680, 993, 1345
CviQI GTAC 2 cut(s) 732, 885
DdeI CTNAG 4 cut(s) 632, 673, 1149, 1455
DpnI GATC 8 cut(s) 143, 291, 318, 373, 418, 504, 678, 1078
DpnII GATC 8 cut(s) 141, 289, 316, 371, 416, 502, 676, 1076
Eam1104I CTCTTC 2 cut(s) 430, 800
EarI CTCTTC 2 cut(s) 430, 800
EciI GGCGGA 2 cut(s) 40, 85
Eco130I CCWWGG 1 cut(s) 981
Eco31I GGTCTC 1 cut(s) 779
Eco47I GGWCC 4 cut(s) 175, 544, 654, 1415
Eco57I CTGAAG 2 cut(s) 91, 495
Eco72I CACGTG 1 cut(s) 1451
Eco88I CYCGRG 1 cut(s) 1395
Eco91I GGTNACC 1 cut(s) 985
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoO109I RGGNCCY 2 cut(s) 544, 1415
EcoO65I GGTNACC 1 cut(s) 985
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 619, 1018
EcoT14I CCWWGG 1 cut(s) 981
ErhI CCWWGG 1 cut(s) 981
FaeI CATG 5 cut(s) 379, 453, 683, 996, 1348
FaqI GGGAC 2 cut(s) 137, 1045
FatI CATG 5 cut(s) 375, 449, 679, 992, 1344
FbaI TGATCA 2 cut(s) 141, 502
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 3 cut(s) 13, 62, 969
FokI GGATG 3 cut(s) 411, 1271, 1505
Fsp4HI GCNGC 3 cut(s) 13, 62, 969
FspBI CTAG 6 cut(s) 714, 750, 1104, 1220, 1242, 1507
FspI TGCGCA 1 cut(s) 1447
GlaI GCGC 2 cut(s) 11, 1447
GluI GCNGC 3 cut(s) 13, 62, 969
GsuI CTGGAG 4 cut(s) 206, 478, 761, 1340
HaeII RGCGCY 1 cut(s) 13
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 248
HhaI GCGC 2 cut(s) 12, 1448
Hin1II CATG 5 cut(s) 379, 453, 683, 996, 1348
Hin6I GCGC 2 cut(s) 10, 1446
HinP1I GCGC 2 cut(s) 10, 1446
HincII GTYRAC 1 cut(s) 1055
HindII GTYRAC 1 cut(s) 1055
HinfI GANTC 4 cut(s) 248, 1166, 1204, 1264
HpaII CCGG 1 cut(s) 16
HphI GGTGA 2 cut(s) 202, 299
Hpy166II GTNNAC 5 cut(s) 691, 701, 829, 887, 1055
Hpy188I TCNGA 6 cut(s) 52, 294, 359, 416, 676, 1152
Hpy8I GTNNAC 5 cut(s) 691, 701, 829, 887, 1055
HpyAV CCTTC 6 cut(s) 25, 67, 557, 634, 662, 1474
HpyCH4III ACNGT 8 cut(s) 128, 603, 612, 1059, 1118, 1127, 1214, 1465
HpyCH4IV ACGT 3 cut(s) 576, 739, 1450
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 538, 965
HpyF3I CTNAG 4 cut(s) 632, 673, 1149, 1455
HpySE526I ACGT 3 cut(s) 576, 739, 1450
Hsp92II CATG 5 cut(s) 379, 453, 683, 996, 1348
HspAI GCGC 2 cut(s) 10, 1446
Ksp22I TGATCA 2 cut(s) 141, 502
Kzo9I GATC 8 cut(s) 141, 289, 316, 371, 416, 502, 676, 1076
LmnI GCTCC 1 cut(s) 497
Lsp1109I GCAGC 1 cut(s) 955
LweI GCATC 3 cut(s) 92, 1256, 1458
MaeI CTAG 6 cut(s) 714, 750, 1104, 1220, 1242, 1507
MaeII ACGT 3 cut(s) 576, 739, 1450
MaeIII GTNAC 8 cut(s) 135, 190, 236, 456, 587, 974, 985, 1332
MalI GATC 8 cut(s) 143, 291, 318, 373, 418, 504, 678, 1078
MboI GATC 8 cut(s) 141, 289, 316, 371, 416, 502, 676, 1076
MboII GAAGA 8 cut(s) 372, 447, 488, 817, 888, 891, 1312, 1417
MflI RGATCY 1 cut(s) 371
MlyI GAGTC 1 cut(s) 257
MseI TTAA 3 cut(s) 215, 483, 800
MslI CAYNNNNRTG 5 cut(s) 380, 448, 634, 761, 1242
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 2 cut(s) 621, 1020
MvaI CCWGG 2 cut(s) 621, 1020
MwoI GCNNNNNNNGC 3 cut(s) 67, 538, 965
NdeII GATC 8 cut(s) 141, 289, 316, 371, 416, 502, 676, 1076
NlaIII CATG 5 cut(s) 379, 453, 683, 996, 1348
NlaIV GGNNCC 1 cut(s) 493
NmuCI GTSAC 3 cut(s) 190, 456, 587
NsbI TGCGCA 1 cut(s) 1447
NspI RCATGY 1 cut(s) 453
NspV TTCGAA 1 cut(s) 91
OliI CACNNNNGTG 2 cut(s) 634, 1242
PfeI GAWTC 3 cut(s) 1166, 1204, 1264
PflMI CCANNNNNTGG 1 cut(s) 184
PkrI GCNGC 3 cut(s) 14, 63, 970
PleI GAGTC 1 cut(s) 256
PmaCI CACGTG 1 cut(s) 1451
PmlI CACGTG 1 cut(s) 1451
PpsI GAGTC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 1451
PpuMI RGGWCCY 2 cut(s) 544, 1415
PsiI TTATAA 1 cut(s) 230
Psp5II RGGWCCY 2 cut(s) 544, 1415
Psp6I CCWGG 2 cut(s) 619, 1018
PspCI CACGTG 1 cut(s) 1451
PspEI GGTNACC 1 cut(s) 985
PspGI CCWGG 2 cut(s) 619, 1018
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 4 cut(s) 175, 544, 654, 1415
PspPPI RGGWCCY 2 cut(s) 544, 1415
PsrI GAACNNNNNNTAC 2 cut(s) 877, 909
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 2 cut(s) 733, 886
RsaNI GTAC 2 cut(s) 732, 885
RseI CAYNNNNRTG 5 cut(s) 380, 448, 634, 761, 1242
SaqAI TTAA 3 cut(s) 215, 483, 800
SatI GCNGC 3 cut(s) 13, 62, 969
Sau3AI GATC 8 cut(s) 141, 289, 316, 371, 416, 502, 676, 1076
Sau96I GGNCC 4 cut(s) 175, 544, 654, 1415
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 621, 1020
SfaNI GCATC 3 cut(s) 92, 1256, 1458
SfuI TTCGAA 1 cut(s) 91
SinI GGWCC 4 cut(s) 175, 544, 654, 1415
SmiMI CAYNNNNRTG 5 cut(s) 380, 448, 634, 761, 1242
SmlI CTYRAG 2 cut(s) 79, 220
SmoI CTYRAG 2 cut(s) 79, 220
SsiI CCGC 5 cut(s) 25, 41, 61, 64, 70
SspMI CTAG 6 cut(s) 714, 750, 1104, 1220, 1242, 1507
StyD4I CCNGG 2 cut(s) 619, 1018
StyI CCWWGG 1 cut(s) 981
TaaI ACNGT 8 cut(s) 128, 603, 612, 1059, 1118, 1127, 1214, 1465
TaiI ACGT 3 cut(s) 579, 742, 1453
TaqI TCGA 3 cut(s) 91, 342, 939
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 3 cut(s) 1166, 1204, 1264
Tru1I TTAA 3 cut(s) 215, 483, 800
Tru9I TTAA 3 cut(s) 215, 483, 800
TscAI CASTG 6 cut(s) 636, 856, 1123, 1132, 1232, 1470
TseFI GTSAC 3 cut(s) 190, 456, 587
TseI GCWGC 2 cut(s) 12, 968
Tsp45I GTSAC 3 cut(s) 190, 456, 587
TspDTI ATGAA 5 cut(s) 818, 1041, 1200, 1287, 1509
TspGWI ACGGA 2 cut(s) 214, 846
TspRI CASTG 6 cut(s) 636, 856, 1123, 1132, 1232, 1470
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 4 cut(s) 175, 544, 654, 1415
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 4 cut(s) 338, 479, 625, 911
XbaI TCTAGA 1 cut(s) 1219
XceI RCATGY 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 700
XspI CTAG 6 cut(s) 714, 750, 1104, 1220, 1242, 1507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.