Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006766

Physical Location & Seq

Genomic Coordinates Forward (+)

6388124 .. 6390955

Gene Structure 2832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0079000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGGGAAAACCCCAACCGGTTCGCGTGCTGTACTGCGCGGTCTGCAGTTTACCGGCCGAGTACTGTGAATTCGGACCCGATTTCGAGAAATGCAAGCCCTGGTTGGTCCAAAACGCCCCGGAGCTTTACCCCGATCTCGTCAGAGATGCTACTGCGAAGGAAGCTGATAGAGTAGCCGATCAGTTGAACGCCACCGGTATCTCTTTCGGAAGTGGCGACGGAGCTACCGCTTCTTCAGCGCCTAAAGAAGAGGTCAAGCGTCTGCCGGGTGGGAAGGTCAAGAAAAAGGAGAAGCTGGAGGTTATTATTGAAAAGGTTACACGCAATAAGCGAAAATGTATCACAACTGTCAAAGGACTGGAGCTTTTTGGTGTCAAACTTAGTGATGCTTCAAAGAAGTTAGGGAAGAAATTTGCTACAGGAGCTTCTGTTGTTAAGGGGCCAACCGAGAAGGACCAAATTGATGTTCAAGGGGATATATTTTATGACATTGTGGAGTTCATTACCGACACCTGGCCTGATGTCCCAGAGTCTGCAATTTTCTTTATTGAAGATGGCAGAAAGGTTCCAGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Exo_endo_phos zf-GRF

Protein Analysis

193

Amino Acids

21.08

Weight (kDa)

7.52

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DENR_N	PF21023	10 - 45	8.1e-19	DENR, N-terminal
SUI1	PF01253	101 - 171	2.6e-20	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36050 AT4G36050 AT4G36050 AT4G36050 AT4G36050
fragaria_vesca	FvH4_1g11761 FvH4_1g11761 FvH4_1g11761 FvH4_1g11761 FvH4_1g11761
malus_domestica	MD02G1131900.v1.1
prunus_persica	Prupe.7G168600_v2.0.a1 Prupe.7G168600_v2.0.a1 Prupe.7G168600_v2.0.a1
pyrus_communis	pycom02g10280
rosa_chinensis	RchiOBHm_Chr2g0099381
rosa_laevigata	RLG00000016877
rosa_multiflora	Rmu_sc0002487.1_g000007
rosa_roxburghii	Rroxscaffold_2G00143120
rosa_rugosa	Rorug02G0079000 Rorug02G0079100
rosa_samantha	Rh2AG129000 Rh2BG132000 Rh2CG132800 Rh2DG133000
rosa_wichuraiana	Rw2G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	27, 41
AciI	CCGC	3 cut(s)	5, 41, 231
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	71, 413
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	2 cut(s)	35, 65
AfiI	CCNNNNNNNGG	1 cut(s)	516
AgeI	ACCGGT	2 cut(s)	19, 197
AgsI	TTSAA	5 cut(s)	190, 314, 396, 473, 554
AjnI	CCWGG	2 cut(s)	101, 515
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AluBI	AGCT	7 cut(s)	127, 167, 227, 298, 367, 428, 575
AluI	AGCT	7 cut(s)	127, 167, 227, 298, 367, 428, 575
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	3 cut(s)	57, 443, 518
ApoI	RAATTY	2 cut(s)	71, 413
AsiGI	ACCGGT	2 cut(s)	19, 197
AspLEI	GCGC	2 cut(s)	41, 244
AspS9I	GGNCC	4 cut(s)	77, 109, 443, 457
AsuC2I	CCSGG	2 cut(s)	122, 270
AvaII	GGWCC	3 cut(s)	77, 109, 457
BccI	CCATC	1 cut(s)	551
BciT130I	CCWGG	2 cut(s)	103, 517
BcnI	CCSGG	2 cut(s)	122, 270
BfmI	CTRYAG	2 cut(s)	46, 420
BfoI	RGCGCY	1 cut(s)	245
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	4 cut(s)	103, 122, 270, 517
Bme18I	GGWCC	3 cut(s)	77, 109, 457
BmgT120I	GGNCC	4 cut(s)	77, 109, 443, 457
BmiI	GGNNCC	3 cut(s)	79, 444, 570
BmrFI	CCNGG	4 cut(s)	103, 122, 270, 517
BmsI	GCATC	2 cut(s)	139, 379
BpmI	CTGGAG	2 cut(s)	320, 383
BpuMI	CCSGG	2 cut(s)	122, 270
BsaJI	CCNNGG	2 cut(s)	101, 120
BsaWI	WCCGGW	2 cut(s)	19, 197
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse118I	RCCGGY	3 cut(s)	19, 55, 197
Bse1I	ACTGG	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	103, 517
BseDI	CCNNGG	2 cut(s)	101, 120
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	366
BseX3I	CGGCCG	1 cut(s)	57
Bsh1236I	CGCG	2 cut(s)	27, 41
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	59, 445, 520
BshTI	ACCGGT	2 cut(s)	19, 197
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	20, 56, 122, 198, 269
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	3 cut(s)	59, 445, 520
Bsp143I	GATC	2 cut(s)	136, 181
BspACI	CCGC	3 cut(s)	5, 41, 231
BspANI	GGCC	3 cut(s)	59, 445, 520
BspFNI	CGCG	2 cut(s)	27, 41
BspLI	GGNNCC	3 cut(s)	79, 444, 570
BspMAI	CTGCAG	1 cut(s)	50
BsrFI	RCCGGY	3 cut(s)	19, 55, 197
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	3 cut(s)	19, 55, 197
BssECI	CCNNGG	2 cut(s)	101, 120
BssMI	GATC	2 cut(s)	136, 181
Bst2UI	CCWGG	2 cut(s)	103, 517
Bst4CI	ACNGT	2 cut(s)	68, 352
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	29, 98
BstDEI	CTNAG	1 cut(s)	383
BstFNI	CGCG	2 cut(s)	27, 41
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	41, 244
BstKTI	GATC	2 cut(s)	139, 184
BstMBI	GATC	2 cut(s)	136, 181
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 164, 239, 425
BstNI	CCWGG	2 cut(s)	103, 517
BstSCI	CCNGG	4 cut(s)	101, 120, 268, 515
BstSFI	CTRYAG	2 cut(s)	46, 420
BstUI	CGCG	2 cut(s)	27, 41
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	59, 445, 520
Cac8I	GCNNGC	2 cut(s)	29, 98
CaiI	CAGNNNCTG	1 cut(s)	536
CfoI	GCGC	2 cut(s)	41, 244
Cfr10I	RCCGGY	3 cut(s)	19, 55, 197
Cfr13I	GGNCC	4 cut(s)	77, 109, 443, 457
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	34, 64
CspAI	ACCGGT	2 cut(s)	19, 197
CviQI	GTAC	2 cut(s)	34, 64
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	2 cut(s)	138, 183
DpnII	GATC	2 cut(s)	136, 181
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EclXI	CGGCCG	1 cut(s)	57
Eco47I	GGWCC	3 cut(s)	77, 109, 457
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	101, 515
FaiI	YATR	2 cut(s)	482, 489
FaqI	GGGAC	1 cut(s)	512
GlaI	GCGC	2 cut(s)	40, 243
GsuI	CTGGAG	2 cut(s)	320, 383
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	59, 445, 520
HapII	CCGG	5 cut(s)	20, 56, 122, 198, 269
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	41, 244
Hin6I	GCGC	2 cut(s)	39, 242
HinP1I	GCGC	2 cut(s)	39, 242
HinfI	GANTC	1 cut(s)	533
HpaII	CCGG	5 cut(s)	20, 56, 122, 198, 269
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	3 cut(s)	77, 146, 212
Hpy188III	TCNNGA	2 cut(s)	88, 283
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	154, 271, 448
HpyCH4III	ACNGT	2 cut(s)	68, 352
HpyCH4V	TGCA	3 cut(s)	48, 96, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 164, 239, 425
HpyF3I	CTNAG	1 cut(s)	383
HspAI	GCGC	2 cut(s)	39, 242
Kzo9I	GATC	2 cut(s)	136, 181
LmnI	GCTCC	4 cut(s)	124, 224, 364, 425
LweI	GCATC	2 cut(s)	139, 379
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	138, 183
MboI	GATC	2 cut(s)	136, 181
MboII	GAAGA	4 cut(s)	228, 263, 421, 566
MluCI	AATT	4 cut(s)	71, 413, 462, 540
MlyI	GAGTC	1 cut(s)	542
MnlI	CCTC	2 cut(s)	247, 295
MseI	TTAA	2 cut(s)	438, 580
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	5 cut(s)	20, 56, 122, 198, 269
MspR9I	CCNGG	4 cut(s)	103, 122, 270, 517
MvaI	CCWGG	2 cut(s)	103, 517
MvnI	CGCG	2 cut(s)	27, 41
MwoI	GCNNNNNNNGC	4 cut(s)	45, 164, 239, 425
NciI	CCSGG	2 cut(s)	122, 270
NdeII	GATC	2 cut(s)	136, 181
NlaIV	GGNNCC	3 cut(s)	79, 444, 570
NmeAIII	GCCGAG	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 331
PinAI	ACCGGT	2 cut(s)	19, 197
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Psp6I	CCWGG	2 cut(s)	101, 515
PspGI	CCWGG	2 cut(s)	101, 515
PspN4I	GGNNCC	3 cut(s)	79, 444, 570
PspPI	GGNCC	4 cut(s)	77, 109, 443, 457
PstI	CTGCAG	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	35, 65
RsaNI	GTAC	2 cut(s)	34, 64
SaqAI	TTAA	2 cut(s)	438, 580
Sau3AI	GATC	2 cut(s)	136, 181
Sau96I	GGNCC	4 cut(s)	77, 109, 443, 457
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	4 cut(s)	103, 122, 270, 517
SfaNI	GCATC	2 cut(s)	139, 379
SfcI	CTRYAG	2 cut(s)	46, 420
SinI	GGWCC	3 cut(s)	77, 109, 457
Sse9I	AATT	4 cut(s)	71, 413, 462, 540
SsiI	CCGC	3 cut(s)	5, 41, 231
StyD4I	CCNGG	4 cut(s)	101, 120, 268, 515
TaaI	ACNGT	2 cut(s)	68, 352
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	71, 413, 462, 540
TatI	WGTACW	2 cut(s)	33, 63
Tru1I	TTAA	2 cut(s)	438, 580
Tru9I	TTAA	2 cut(s)	438, 580
TspDTI	ATGAA	1 cut(s)	493
TspGWI	ACGGA	1 cut(s)	237
VpaK11BI	GGWCC	3 cut(s)	77, 109, 457
XapI	RAATTY	2 cut(s)	71, 413
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.