DNA-(Apurinic or apyrimidinic site) lyase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G36050 AT4G36050 AT4G36050 AT4G36050 AT4G36050 |
| fragaria_vesca | FvH4_1g11761 FvH4_1g11761 FvH4_1g11761 FvH4_1g11761 FvH4_1g11761 |
| malus_domestica | MD02G1131900.v1.1 |
| prunus_persica | Prupe.7G168600_v2.0.a1 Prupe.7G168600_v2.0.a1 Prupe.7G168600_v2.0.a1 |
| pyrus_communis | pycom02g10280 |
| rosa_chinensis | RchiOBHm_Chr2g0099381 |
| rosa_laevigata | RLG00000016877 |
| rosa_multiflora | Rmu_sc0002487.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00143120 |
| rosa_rugosa | Rorug02G0079000 Rorug02G0079100 |
| rosa_samantha | Rh2AG129000 Rh2BG132000 Rh2CG132800 Rh2DG133000 |
| rosa_wichuraiana | Rw2G009930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 59 |
| Acc36I | ACCTGC | 1 cut(s) | 1303 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 13 |
| AciI | CCGC | 1 cut(s) | 1338 |
| AclWI | GGATC | 3 cut(s) | 43, 195, 232 |
| AcsI | RAATTY | 3 cut(s) | 167, 308, 454 |
| AcuI | CTGAAG | 2 cut(s) | 324, 1329 |
| AcvI | CACGTG | 1 cut(s) | 1283 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 13, 370, 409, 849, 1256 |
| AgsI | TTSAA | 7 cut(s) | 380, 497, 765, 933, 1123, 1330, 1344 |
| AhlI | ACTAGT | 1 cut(s) | 524 |
| AjnI | CCWGG | 2 cut(s) | 448, 853 |
| AleI | CACNNNNGTG | 1 cut(s) | 463 |
| AluBI | AGCT | 5 cut(s) | 13, 48, 398, 702, 1145 |
| AluI | AGCT | 5 cut(s) | 13, 48, 398, 702, 1145 |
| Alw21I | GWGCWC | 2 cut(s) | 950, 1282 |
| Alw26I | GTCTC | 4 cut(s) | 84, 608, 683, 689 |
| Alw44I | GTGCAC | 1 cut(s) | 1278 |
| AlwI | GGATC | 3 cut(s) | 43, 195, 232 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 962 |
| Ama87I | CYCGRG | 2 cut(s) | 736, 1227 |
| AoxI | GGCC | 3 cut(s) | 4, 851, 1335 |
| ApaLI | GTGCAC | 1 cut(s) | 1278 |
| ApeKI | GCWGC | 2 cut(s) | 803, 1109 |
| ApoI | RAATTY | 3 cut(s) | 167, 308, 454 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 643 |
| AspLEI | GCGC | 1 cut(s) | 1076 |
| AspS9I | GGNCC | 5 cut(s) | 4, 373, 1247, 1292, 1335 |
| AsuHPI | GGTGA | 3 cut(s) | 31, 128, 353 |
| AvaI | CYCGRG | 2 cut(s) | 736, 1227 |
| AvaII | GGWCC | 3 cut(s) | 373, 1247, 1292 |
| BaeGI | GKGCMC | 1 cut(s) | 1282 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 603, 636 |
| BbrPI | CACGTG | 1 cut(s) | 1283 |
| BbsI | GAAGAC | 1 cut(s) | 350 |
| Bbv12I | GWGCWC | 2 cut(s) | 950, 1282 |
| BbvCI | CCTCAGC | 1 cut(s) | 1287 |
| BbvI | GCAGC | 2 cut(s) | 790, 1096 |
| BccI | CCATC | 2 cut(s) | 66, 186 |
| BciT130I | CCWGG | 2 cut(s) | 450, 855 |
| BcoDI | GTCTC | 4 cut(s) | 84, 608, 683, 689 |
| BcuI | ACTAGT | 1 cut(s) | 524 |
| BfaI | CTAG | 3 cut(s) | 525, 579, 939 |
| BfuAI | ACCTGC | 1 cut(s) | 1303 |
| BisI | GCNGC | 3 cut(s) | 804, 1110, 1338 |
| BlsI | GCNGC | 3 cut(s) | 805, 1111, 1339 |
| Bme1390I | CCNGG | 2 cut(s) | 450, 855 |
| Bme18I | GGWCC | 3 cut(s) | 373, 1247, 1292 |
| BmeT110I | CYCGRG | 2 cut(s) | 736, 1227 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 373, 1247, 1292, 1335 |
| BmiI | GGNNCC | 3 cut(s) | 322, 502, 1293 |
| BmrFI | CCNGG | 2 cut(s) | 450, 855 |
| BmrI | ACTGGG | 1 cut(s) | 972 |
| BmsI | GCATC | 3 cut(s) | 1078, 1085, 1307 |
| BmuI | ACTGGG | 1 cut(s) | 972 |
| BpiI | GAAGAC | 1 cut(s) | 350 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 686, 718 |
| BpmI | CTGGAG | 4 cut(s) | 35, 307, 590, 1172 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1287 |
| BpuEI | CTTGAG | 1 cut(s) | 1054 |
| Bsa29I | ATCGAT | 1 cut(s) | 330 |
| BsaAI | YACGTR | 1 cut(s) | 1283 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1092 |
| BsaI | GGTCTC | 1 cut(s) | 608 |
| BsaJI | CCNNGG | 2 cut(s) | 854, 1226 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 13, 370, 409, 849, 1256 |
| Bse1I | ACTGG | 3 cut(s) | 537, 967, 1155 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1092 |
| BseBI | CCWGG | 2 cut(s) | 450, 855 |
| BseCI | ATCGAT | 1 cut(s) | 330 |
| BseDI | CCNNGG | 2 cut(s) | 854, 1226 |
| BseGI | GGATG | 3 cut(s) | 253, 664, 1093 |
| BseJI | GATNNNNATC | 1 cut(s) | 1092 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 13, 370, 409, 849, 1256 |
| BseMII | CTCAG | 4 cut(s) | 452, 772, 992, 1278 |
| BseNI | ACTGG | 3 cut(s) | 537, 967, 1155 |
| BseRI | GAGGAG | 2 cut(s) | 112, 496 |
| BseSI | GKGCMC | 1 cut(s) | 1282 |
| BseXI | GCAGC | 2 cut(s) | 790, 1096 |
| BsgI | GTGCAG | 1 cut(s) | 975 |
| BshFI | GGCC | 3 cut(s) | 6, 853, 1337 |
| BshVI | ATCGAT | 1 cut(s) | 330 |
| BsiHKAI | GWGCWC | 2 cut(s) | 950, 1282 |
| BsiHKCI | CYCGRG | 2 cut(s) | 736, 1227 |
| BslFI | GGGAC | 3 cut(s) | 880, 979, 1305 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 13, 370, 409, 849, 1256 |
| BsmAI | GTCTC | 4 cut(s) | 84, 608, 683, 689 |
| BsmFI | GGGAC | 3 cut(s) | 880, 979, 1305 |
| BsnI | GGCC | 3 cut(s) | 6, 853, 1337 |
| Bso31I | GGTCTC | 1 cut(s) | 608 |
| BsoBI | CYCGRG | 2 cut(s) | 736, 1227 |
| Bsp1286I | GDGCHC | 2 cut(s) | 950, 1282 |
| Bsp143I | GATC | 9 cut(s) | 35, 118, 145, 200, 224, 331, 505, 911, 1093 |
| BspACI | CCGC | 1 cut(s) | 1338 |
| BspANI | GGCC | 3 cut(s) | 6, 853, 1337 |
| BspCNI | CTCAG | 4 cut(s) | 453, 771, 991, 1279 |
| BspDI | ATCGAT | 1 cut(s) | 330 |
| BspLI | GGNNCC | 3 cut(s) | 322, 502, 1293 |
| BspMI | ACCTGC | 1 cut(s) | 1303 |
| BspPI | GGATC | 3 cut(s) | 43, 195, 232 |
| BspTNI | GGTCTC | 1 cut(s) | 608 |
| BsrI | ACTGG | 3 cut(s) | 537, 967, 1155 |
| BssECI | CCNNGG | 2 cut(s) | 854, 1226 |
| BssMI | GATC | 9 cut(s) | 35, 118, 145, 200, 224, 331, 505, 911, 1093 |
| Bst2UI | CCWGG | 2 cut(s) | 450, 855 |
| Bst4CI | ACNGT | 1 cut(s) | 441 |
| Bst6I | CTCTTC | 2 cut(s) | 259, 629 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1177 |
| BstBAI | YACGTR | 1 cut(s) | 1283 |
| BstC8I | GCNNGC | 4 cut(s) | 400, 554, 704, 1029 |
| BstDEI | CTNAG | 7 cut(s) | 142, 461, 758, 817, 867, 978, 1287 |
| BstF5I | GGATG | 3 cut(s) | 253, 664, 1093 |
| BstHHI | GCGC | 1 cut(s) | 1076 |
| BstKTI | GATC | 9 cut(s) | 38, 121, 148, 203, 227, 334, 508, 914, 1096 |
| BstMAI | GTCTC | 4 cut(s) | 84, 608, 683, 689 |
| BstMBI | GATC | 9 cut(s) | 35, 118, 145, 200, 224, 331, 505, 911, 1093 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 558, 800, 1177 |
| BstNI | CCWGG | 2 cut(s) | 450, 855 |
| BstNSI | RCATGY | 1 cut(s) | 282 |
| BstSCI | CCNGG | 2 cut(s) | 448, 853 |
| BstSLI | GKGCMC | 1 cut(s) | 1282 |
| BstV1I | GCAGC | 2 cut(s) | 790, 1096 |
| BstV2I | GAAGAC | 1 cut(s) | 350 |
| BstX2I | RGATCY | 2 cut(s) | 200, 224 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 211, 749 |
| BstYI | RGATCY | 2 cut(s) | 200, 224 |
| Bsu15I | ATCGAT | 1 cut(s) | 330 |
| BsuRI | GGCC | 3 cut(s) | 6, 853, 1337 |
| BsuTUI | ATCGAT | 1 cut(s) | 330 |
| BtsCI | GGATG | 3 cut(s) | 253, 664, 1093 |
| BtsI | GCAGTG | 2 cut(s) | 1051, 1061 |
| BtsIMutI | CAGTG | 4 cut(s) | 458, 960, 1051, 1061 |
| BveI | ACCTGC | 1 cut(s) | 1303 |
| Cac8I | GCNNGC | 4 cut(s) | 400, 554, 704, 1029 |
| CaiI | CAGNNNCTG | 1 cut(s) | 962 |
| CfoI | GCGC | 1 cut(s) | 1076 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 373, 1247, 1292, 1335 |
| ClaI | ATCGAT | 1 cut(s) | 330 |
| CseI | GACGC | 1 cut(s) | 77 |
| CviAII | CATG | 6 cut(s) | 205, 279, 404, 509, 1024, 1177 |
| DdeI | CTNAG | 7 cut(s) | 142, 461, 758, 817, 867, 978, 1287 |
| DpnI | GATC | 9 cut(s) | 37, 120, 147, 202, 226, 333, 507, 913, 1095 |
| DpnII | GATC | 9 cut(s) | 35, 118, 145, 200, 224, 331, 505, 911, 1093 |
| Eam1104I | CTCTTC | 2 cut(s) | 259, 629 |
| EarI | CTCTTC | 2 cut(s) | 259, 629 |
| Eco31I | GGTCTC | 1 cut(s) | 608 |
| Eco47I | GGWCC | 3 cut(s) | 373, 1247, 1292 |
| Eco57I | CTGAAG | 2 cut(s) | 324, 1329 |
| Eco72I | CACGTG | 1 cut(s) | 1283 |
| Eco88I | CYCGRG | 2 cut(s) | 736, 1227 |
| EcoO109I | RGGNCCY | 3 cut(s) | 373, 1247, 1292 |
| EcoRII | CCWGG | 2 cut(s) | 448, 853 |
| FaeI | CATG | 6 cut(s) | 208, 282, 407, 512, 1027, 1180 |
| FaqI | GGGAC | 3 cut(s) | 880, 979, 1305 |
| FatI | CATG | 6 cut(s) | 204, 278, 403, 508, 1023, 1176 |
| Fnu4HI | GCNGC | 3 cut(s) | 804, 1110, 1338 |
| FokI | GGATG | 3 cut(s) | 240, 671, 1100 |
| Fsp4HI | GCNGC | 3 cut(s) | 804, 1110, 1338 |
| FspBI | CTAG | 3 cut(s) | 525, 579, 939 |
| GlaI | GCGC | 1 cut(s) | 1075 |
| GluI | GCNGC | 3 cut(s) | 804, 1110, 1338 |
| GsuI | CTGGAG | 4 cut(s) | 35, 307, 590, 1172 |
| HaeIII | GGCC | 3 cut(s) | 6, 853, 1337 |
| HgaI | GACGC | 1 cut(s) | 77 |
| HhaI | GCGC | 1 cut(s) | 1076 |
| Hin1II | CATG | 6 cut(s) | 208, 282, 407, 512, 1027, 1180 |
| Hin6I | GCGC | 1 cut(s) | 1074 |
| HinP1I | GCGC | 1 cut(s) | 1074 |
| HincII | GTYRAC | 1 cut(s) | 667 |
| HindII | GTYRAC | 1 cut(s) | 667 |
| HinfI | GANTC | 6 cut(s) | 77, 327, 753, 971, 995, 1033 |
| HpaI | GTTAAC | 1 cut(s) | 667 |
| HphI | GGTGA | 3 cut(s) | 31, 128, 353 |
| Hpy166II | GTNNAC | 4 cut(s) | 520, 530, 667, 1280 |
| Hpy188I | TCNGA | 7 cut(s) | 123, 188, 245, 505, 649, 981, 994 |
| Hpy188III | TCNNGA | 8 cut(s) | 257, 324, 765, 922, 1085, 1097, 1211, 1307 |
| Hpy8I | GTNNAC | 4 cut(s) | 520, 530, 667, 1280 |
| HpyAV | CCTTC | 3 cut(s) | 386, 463, 491 |
| HpyCH4III | ACNGT | 1 cut(s) | 441 |
| HpyCH4IV | ACGT | 2 cut(s) | 568, 1282 |
| HpyCH4V | TGCA | 9 cut(s) | 131, 512, 956, 1066, 1091, 1180, 1200, 1280, 1298 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 558, 800, 1177 |
| HpyF3I | CTNAG | 7 cut(s) | 142, 461, 758, 817, 867, 978, 1287 |
| HpySE526I | ACGT | 2 cut(s) | 568, 1282 |
| Hsp92II | CATG | 6 cut(s) | 208, 282, 407, 512, 1027, 1180 |
| HspAI | GCGC | 1 cut(s) | 1074 |
| KspAI | GTTAAC | 1 cut(s) | 667 |
| Kzo9I | GATC | 9 cut(s) | 35, 118, 145, 200, 224, 331, 505, 911, 1093 |
| LmnI | GCTCC | 2 cut(s) | 326, 506 |
| Lsp1109I | GCAGC | 2 cut(s) | 790, 1096 |
| LweI | GCATC | 3 cut(s) | 1078, 1085, 1307 |
| MaeI | CTAG | 3 cut(s) | 525, 579, 939 |
| MaeII | ACGT | 2 cut(s) | 568, 1282 |
| MaeIII | GTNAC | 7 cut(s) | 19, 65, 285, 416, 809, 820, 1164 |
| MalI | GATC | 9 cut(s) | 37, 120, 147, 202, 226, 333, 507, 913, 1095 |
| MboI | GATC | 9 cut(s) | 35, 118, 145, 200, 224, 331, 505, 911, 1093 |
| MboII | GAAGA | 9 cut(s) | 201, 276, 317, 350, 646, 723, 1135, 1144, 1249 |
| MfeI | CAATTG | 2 cut(s) | 771, 890 |
| MflI | RGATCY | 2 cut(s) | 200, 224 |
| MhlI | GDGCHC | 2 cut(s) | 950, 1282 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MroXI | GAANNNNTTC | 1 cut(s) | 643 |
| MseI | TTAA | 6 cut(s) | 44, 312, 629, 666, 672, 827 |
| MslI | CAYNNNNRTG | 3 cut(s) | 209, 277, 463 |
| MspR9I | CCNGG | 2 cut(s) | 450, 855 |
| MunI | CAATTG | 2 cut(s) | 771, 890 |
| MvaI | CCWGG | 2 cut(s) | 450, 855 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 558, 800, 1177 |
| NdeII | GATC | 9 cut(s) | 35, 118, 145, 200, 224, 331, 505, 911, 1093 |
| NlaIII | CATG | 6 cut(s) | 208, 282, 407, 512, 1027, 1180 |
| NlaIV | GGNNCC | 3 cut(s) | 322, 502, 1293 |
| NmuCI | GTSAC | 3 cut(s) | 19, 285, 416 |
| NspI | RCATGY | 1 cut(s) | 282 |
| OliI | CACNNNNGTG | 1 cut(s) | 463 |
| PaeR7I | CTCGAG | 1 cut(s) | 736 |
| PdmI | GAANNNNTTC | 1 cut(s) | 643 |
| PfeI | GAWTC | 5 cut(s) | 327, 753, 971, 995, 1033 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 13 |
| PkrI | GCNGC | 3 cut(s) | 805, 1111, 1339 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PmaCI | CACGTG | 1 cut(s) | 1283 |
| PmlI | CACGTG | 1 cut(s) | 1283 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| Ppu21I | YACGTR | 1 cut(s) | 1283 |
| PpuMI | RGGWCCY | 3 cut(s) | 373, 1247, 1292 |
| PsiI | TTATAA | 1 cut(s) | 59 |
| Psp5II | RGGWCCY | 3 cut(s) | 373, 1247, 1292 |
| Psp6I | CCWGG | 2 cut(s) | 448, 853 |
| PspCI | CACGTG | 1 cut(s) | 1283 |
| PspGI | CCWGG | 2 cut(s) | 448, 853 |
| PspN4I | GGNNCC | 3 cut(s) | 322, 502, 1293 |
| PspPI | GGNCC | 5 cut(s) | 4, 373, 1247, 1292, 1335 |
| PspPPI | RGGWCCY | 3 cut(s) | 373, 1247, 1292 |
| PspXI | VCTCGAGB | 1 cut(s) | 736 |
| PstNI | CAGNNNCTG | 1 cut(s) | 962 |
| PsuI | RGATCY | 2 cut(s) | 200, 224 |
| RseI | CAYNNNNRTG | 3 cut(s) | 209, 277, 463 |
| SaqAI | TTAA | 6 cut(s) | 44, 312, 629, 666, 672, 827 |
| SatI | GCNGC | 3 cut(s) | 804, 1110, 1338 |
| Sau3AI | GATC | 9 cut(s) | 35, 118, 145, 200, 224, 331, 505, 911, 1093 |
| Sau96I | GGNCC | 5 cut(s) | 4, 373, 1247, 1292, 1335 |
| SchI | GAGTC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 2 cut(s) | 450, 855 |
| SduI | GDGCHC | 2 cut(s) | 950, 1282 |
| SfaNI | GCATC | 3 cut(s) | 1078, 1085, 1307 |
| Sfr274I | CTCGAG | 1 cut(s) | 736 |
| SinI | GGWCC | 3 cut(s) | 373, 1247, 1292 |
| SlaI | CTCGAG | 1 cut(s) | 736 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 209, 277, 463 |
| SmlI | CTYRAG | 2 cut(s) | 736, 1069 |
| SmoI | CTYRAG | 2 cut(s) | 736, 1069 |
| SpeI | ACTAGT | 1 cut(s) | 524 |
| SsiI | CCGC | 1 cut(s) | 1338 |
| SspI | AATATT | 1 cut(s) | 127 |
| SspMI | CTAG | 3 cut(s) | 525, 579, 939 |
| StyD4I | CCNGG | 2 cut(s) | 448, 853 |
| TaaI | ACNGT | 1 cut(s) | 441 |
| TaiI | ACGT | 2 cut(s) | 571, 1285 |
| TaqI | TCGA | 5 cut(s) | 38, 330, 737, 1210, 1351 |
| TauI | GCSGC | 1 cut(s) | 1340 |
| TfiI | GAWTC | 5 cut(s) | 327, 753, 971, 995, 1033 |
| Tru1I | TTAA | 6 cut(s) | 44, 312, 629, 666, 672, 827 |
| Tru9I | TTAA | 6 cut(s) | 44, 312, 629, 666, 672, 827 |
| TscAI | CASTG | 4 cut(s) | 465, 967, 1051, 1061 |
| TseFI | GTSAC | 3 cut(s) | 19, 285, 416 |
| TseI | GCWGC | 2 cut(s) | 803, 1109 |
| Tsp45I | GTSAC | 3 cut(s) | 19, 285, 416 |
| TspDTI | ATGAA | 5 cut(s) | 647, 675, 876, 1029, 1116 |
| TspGWI | ACGGA | 1 cut(s) | 43 |
| TspRI | CASTG | 4 cut(s) | 465, 967, 1051, 1061 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 13 |
| VneI | GTGCAC | 1 cut(s) | 1278 |
| VpaK11BI | GGWCC | 3 cut(s) | 373, 1247, 1292 |
| XapI | RAATTY | 3 cut(s) | 167, 308, 454 |
| XceI | RCATGY | 1 cut(s) | 282 |
| XhoI | CTCGAG | 1 cut(s) | 736 |
| XmnI | GAANNNNTTC | 1 cut(s) | 643 |
| XspI | CTAG | 3 cut(s) | 525, 579, 939 |