Rh2CG132800

DNA-(Apurinic or apyrimidinic site) lyase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
11830214 .. 11834752
4539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG132800.1

Sequence Viewer

Length: 1368 bp
ATGGGCCAAGAGCTGGAGGTGACGATACGGAAAGGATCGAGTTTAAGCTCAATTTTTATAAGATGTTACAGATGGGAGTCTCTCTTGCGTCAGGGGAGGAGGATAATTGTAGTTGGTGATCTGAATATTGCACCCACTTGCTTAGATCGTTGTGAAGCAGAACCAGAATTTGAGAACAATCAATTCAGAAGATGGTTTAGATCCATGTTAGTGGAGAATAGAGGATCTTTCTTTGATGTTTTCAGAGCAAAACATCCTGATAGAAGAGAAGCATACACATGCTGGTCACAAAGTAGTGGTGCTGAAGAATTTAATTATGGCTCCAGAATCGATCACATTCTTTGTGCTGGTTTATGTCTTCACCAAGAGCAGGACCTTCAAAACCATAACTTTGTAGCTTGCCATGTCAAGGAGTGTGACATATTGACACAATATAAACGGTGGAAACCAGGAAATTCACTGAGGTGGAAGGGAGGGCAGAGGAGTATCAAACTTGAAGGCTCCGATCATGCACCTGTTTACACTAGTTTACTGGAATTGCCTAATATCTGCCAGCATAGCACCCCACGTTTATCTGCTAGATATATTCCAATGGTTCGTGGTCTCCAGCAAACCCTTGTATCATTGTTAATGAAGAGAAAAGTTTCTGAACAAGTGGATGAAGTTAACATTAAAGAGAGTTGTAGCGAGACAGAGACAAGCTCGCCTGACCAATGTGGCACACCCTGTTCTTCCTCGAGCCAAGACTTTGGATTCCTCAGTTCAAGAACAATTGAGTGTTCCAGCAGTTTTGCTAATGAGGCTGCTTGTAACACCTTAGTTACTTTAAGTAGTGAGCCTACCAAAACAAGGCCAGGGAATGAAACTAAGAAAAAAGCAAAAGGCAGTCAATTGTCCCAACTCTCATTGAGATCATTTTTCCAGAAAAGTTCAATCCCTAGCAAGAGCACCCGTGCAGACACTGGGACTGAATCAACTCAGATAGATATTTCAGAATCTAATCATTTGCCAAATGAAACTCCCATGCCAGCGAATCAAAGTGGCAGTGTAGAGCAGTGTGTATTGCACTCAAGCGCATCAATTCAGGATGCAGATCAAGATGAACTCGCTGCTTGTTCTTTGAAGAAAGAGAAGAATAGTTTAGCTTTACTGGAGTGGCAAAGGTTACAGCAAGTCATGCAGAATAGCATACCACTTTGCAAGGGTCATCGAGAACCTTGTGTTCCTCGGGTTGTGAAGAAACAAGGTCCTAATTTTGGTCGCAGATTTTATGTTTGTGCACGTGCTGAGGGACCTGCATCAAATCCTGAAGCAAATTGTAATTATTTCAAATGGGCCGCTTCAAAACCTCGAAACAACAAAGGATGA

Protein Analysis

455

Amino Acids

51.18

Weight (kDa)

8.68

Isoelectric Point (pI)

59.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 25 - 117 3e-07 Endonuclease/Exonuclease/phosphatase family
Zn_ribbon_GRF PF06839 398 - 447 1.1e-12 GRF zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 1303
AccB7I CCANNNNNTGG 1 cut(s) 13
AciI CCGC 1 cut(s) 1338
AclWI GGATC 3 cut(s) 43, 195, 232
AcsI RAATTY 3 cut(s) 167, 308, 454
AcuI CTGAAG 2 cut(s) 324, 1329
AcvI CACGTG 1 cut(s) 1283
AfiI CCNNNNNNNGG 5 cut(s) 13, 370, 409, 849, 1256
AgsI TTSAA 7 cut(s) 380, 497, 765, 933, 1123, 1330, 1344
AhlI ACTAGT 1 cut(s) 524
AjnI CCWGG 2 cut(s) 448, 853
AleI CACNNNNGTG 1 cut(s) 463
AluBI AGCT 5 cut(s) 13, 48, 398, 702, 1145
AluI AGCT 5 cut(s) 13, 48, 398, 702, 1145
Alw21I GWGCWC 2 cut(s) 950, 1282
Alw26I GTCTC 4 cut(s) 84, 608, 683, 689
Alw44I GTGCAC 1 cut(s) 1278
AlwI GGATC 3 cut(s) 43, 195, 232
AlwNI CAGNNNCTG 1 cut(s) 962
Ama87I CYCGRG 2 cut(s) 736, 1227
AoxI GGCC 3 cut(s) 4, 851, 1335
ApaLI GTGCAC 1 cut(s) 1278
ApeKI GCWGC 2 cut(s) 803, 1109
ApoI RAATTY 3 cut(s) 167, 308, 454
Asp700I GAANNNNTTC 1 cut(s) 643
AspLEI GCGC 1 cut(s) 1076
AspS9I GGNCC 5 cut(s) 4, 373, 1247, 1292, 1335
AsuHPI GGTGA 3 cut(s) 31, 128, 353
AvaI CYCGRG 2 cut(s) 736, 1227
AvaII GGWCC 3 cut(s) 373, 1247, 1292
BaeGI GKGCMC 1 cut(s) 1282
BaeI ACNNNNGTAYC 2 cut(s) 603, 636
BbrPI CACGTG 1 cut(s) 1283
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 950, 1282
BbvCI CCTCAGC 1 cut(s) 1287
BbvI GCAGC 2 cut(s) 790, 1096
BccI CCATC 2 cut(s) 66, 186
BciT130I CCWGG 2 cut(s) 450, 855
BcoDI GTCTC 4 cut(s) 84, 608, 683, 689
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 3 cut(s) 525, 579, 939
BfuAI ACCTGC 1 cut(s) 1303
BisI GCNGC 3 cut(s) 804, 1110, 1338
BlsI GCNGC 3 cut(s) 805, 1111, 1339
Bme1390I CCNGG 2 cut(s) 450, 855
Bme18I GGWCC 3 cut(s) 373, 1247, 1292
BmeT110I CYCGRG 2 cut(s) 736, 1227
BmgT120I GGNCC 5 cut(s) 4, 373, 1247, 1292, 1335
BmiI GGNNCC 3 cut(s) 322, 502, 1293
BmrFI CCNGG 2 cut(s) 450, 855
BmrI ACTGGG 1 cut(s) 972
BmsI GCATC 3 cut(s) 1078, 1085, 1307
BmuI ACTGGG 1 cut(s) 972
BpiI GAAGAC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 686, 718
BpmI CTGGAG 4 cut(s) 35, 307, 590, 1172
Bpu10I CCTNAGC 1 cut(s) 1287
BpuEI CTTGAG 1 cut(s) 1054
Bsa29I ATCGAT 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 1283
BsaBI GATNNNNATC 1 cut(s) 1092
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 2 cut(s) 854, 1226
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 370, 409, 849, 1256
Bse1I ACTGG 3 cut(s) 537, 967, 1155
Bse8I GATNNNNATC 1 cut(s) 1092
BseBI CCWGG 2 cut(s) 450, 855
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 854, 1226
BseGI GGATG 3 cut(s) 253, 664, 1093
BseJI GATNNNNATC 1 cut(s) 1092
BseLI CCNNNNNNNGG 5 cut(s) 13, 370, 409, 849, 1256
BseMII CTCAG 4 cut(s) 452, 772, 992, 1278
BseNI ACTGG 3 cut(s) 537, 967, 1155
BseRI GAGGAG 2 cut(s) 112, 496
BseSI GKGCMC 1 cut(s) 1282
BseXI GCAGC 2 cut(s) 790, 1096
BsgI GTGCAG 1 cut(s) 975
BshFI GGCC 3 cut(s) 6, 853, 1337
BshVI ATCGAT 1 cut(s) 330
BsiHKAI GWGCWC 2 cut(s) 950, 1282
BsiHKCI CYCGRG 2 cut(s) 736, 1227
BslFI GGGAC 3 cut(s) 880, 979, 1305
BslI CCNNNNNNNGG 5 cut(s) 13, 370, 409, 849, 1256
BsmAI GTCTC 4 cut(s) 84, 608, 683, 689
BsmFI GGGAC 3 cut(s) 880, 979, 1305
BsnI GGCC 3 cut(s) 6, 853, 1337
Bso31I GGTCTC 1 cut(s) 608
BsoBI CYCGRG 2 cut(s) 736, 1227
Bsp1286I GDGCHC 2 cut(s) 950, 1282
Bsp143I GATC 9 cut(s) 35, 118, 145, 200, 224, 331, 505, 911, 1093
BspACI CCGC 1 cut(s) 1338
BspANI GGCC 3 cut(s) 6, 853, 1337
BspCNI CTCAG 4 cut(s) 453, 771, 991, 1279
BspDI ATCGAT 1 cut(s) 330
BspLI GGNNCC 3 cut(s) 322, 502, 1293
BspMI ACCTGC 1 cut(s) 1303
BspPI GGATC 3 cut(s) 43, 195, 232
BspTNI GGTCTC 1 cut(s) 608
BsrI ACTGG 3 cut(s) 537, 967, 1155
BssECI CCNNGG 2 cut(s) 854, 1226
BssMI GATC 9 cut(s) 35, 118, 145, 200, 224, 331, 505, 911, 1093
Bst2UI CCWGG 2 cut(s) 450, 855
Bst4CI ACNGT 1 cut(s) 441
Bst6I CTCTTC 2 cut(s) 259, 629
BstAPI GCANNNNNTGC 1 cut(s) 1177
BstBAI YACGTR 1 cut(s) 1283
BstC8I GCNNGC 4 cut(s) 400, 554, 704, 1029
BstDEI CTNAG 7 cut(s) 142, 461, 758, 817, 867, 978, 1287
BstF5I GGATG 3 cut(s) 253, 664, 1093
BstHHI GCGC 1 cut(s) 1076
BstKTI GATC 9 cut(s) 38, 121, 148, 203, 227, 334, 508, 914, 1096
BstMAI GTCTC 4 cut(s) 84, 608, 683, 689
BstMBI GATC 9 cut(s) 35, 118, 145, 200, 224, 331, 505, 911, 1093
BstMWI GCNNNNNNNGC 3 cut(s) 558, 800, 1177
BstNI CCWGG 2 cut(s) 450, 855
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 448, 853
BstSLI GKGCMC 1 cut(s) 1282
BstV1I GCAGC 2 cut(s) 790, 1096
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 2 cut(s) 200, 224
BstXI CCANNNNNNTGG 2 cut(s) 211, 749
BstYI RGATCY 2 cut(s) 200, 224
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 3 cut(s) 6, 853, 1337
BsuTUI ATCGAT 1 cut(s) 330
BtsCI GGATG 3 cut(s) 253, 664, 1093
BtsI GCAGTG 2 cut(s) 1051, 1061
BtsIMutI CAGTG 4 cut(s) 458, 960, 1051, 1061
BveI ACCTGC 1 cut(s) 1303
Cac8I GCNNGC 4 cut(s) 400, 554, 704, 1029
CaiI CAGNNNCTG 1 cut(s) 962
CfoI GCGC 1 cut(s) 1076
Cfr13I GGNCC 5 cut(s) 4, 373, 1247, 1292, 1335
ClaI ATCGAT 1 cut(s) 330
CseI GACGC 1 cut(s) 77
CviAII CATG 6 cut(s) 205, 279, 404, 509, 1024, 1177
DdeI CTNAG 7 cut(s) 142, 461, 758, 817, 867, 978, 1287
DpnI GATC 9 cut(s) 37, 120, 147, 202, 226, 333, 507, 913, 1095
DpnII GATC 9 cut(s) 35, 118, 145, 200, 224, 331, 505, 911, 1093
Eam1104I CTCTTC 2 cut(s) 259, 629
EarI CTCTTC 2 cut(s) 259, 629
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 3 cut(s) 373, 1247, 1292
Eco57I CTGAAG 2 cut(s) 324, 1329
Eco72I CACGTG 1 cut(s) 1283
Eco88I CYCGRG 2 cut(s) 736, 1227
EcoO109I RGGNCCY 3 cut(s) 373, 1247, 1292
EcoRII CCWGG 2 cut(s) 448, 853
FaeI CATG 6 cut(s) 208, 282, 407, 512, 1027, 1180
FaqI GGGAC 3 cut(s) 880, 979, 1305
FatI CATG 6 cut(s) 204, 278, 403, 508, 1023, 1176
Fnu4HI GCNGC 3 cut(s) 804, 1110, 1338
FokI GGATG 3 cut(s) 240, 671, 1100
Fsp4HI GCNGC 3 cut(s) 804, 1110, 1338
FspBI CTAG 3 cut(s) 525, 579, 939
GlaI GCGC 1 cut(s) 1075
GluI GCNGC 3 cut(s) 804, 1110, 1338
GsuI CTGGAG 4 cut(s) 35, 307, 590, 1172
HaeIII GGCC 3 cut(s) 6, 853, 1337
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 1076
Hin1II CATG 6 cut(s) 208, 282, 407, 512, 1027, 1180
Hin6I GCGC 1 cut(s) 1074
HinP1I GCGC 1 cut(s) 1074
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 6 cut(s) 77, 327, 753, 971, 995, 1033
HpaI GTTAAC 1 cut(s) 667
HphI GGTGA 3 cut(s) 31, 128, 353
Hpy166II GTNNAC 4 cut(s) 520, 530, 667, 1280
Hpy188I TCNGA 7 cut(s) 123, 188, 245, 505, 649, 981, 994
Hpy188III TCNNGA 8 cut(s) 257, 324, 765, 922, 1085, 1097, 1211, 1307
Hpy8I GTNNAC 4 cut(s) 520, 530, 667, 1280
HpyAV CCTTC 3 cut(s) 386, 463, 491
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4IV ACGT 2 cut(s) 568, 1282
HpyCH4V TGCA 9 cut(s) 131, 512, 956, 1066, 1091, 1180, 1200, 1280, 1298
HpyF10VI GCNNNNNNNGC 3 cut(s) 558, 800, 1177
HpyF3I CTNAG 7 cut(s) 142, 461, 758, 817, 867, 978, 1287
HpySE526I ACGT 2 cut(s) 568, 1282
Hsp92II CATG 6 cut(s) 208, 282, 407, 512, 1027, 1180
HspAI GCGC 1 cut(s) 1074
KspAI GTTAAC 1 cut(s) 667
Kzo9I GATC 9 cut(s) 35, 118, 145, 200, 224, 331, 505, 911, 1093
LmnI GCTCC 2 cut(s) 326, 506
Lsp1109I GCAGC 2 cut(s) 790, 1096
LweI GCATC 3 cut(s) 1078, 1085, 1307
MaeI CTAG 3 cut(s) 525, 579, 939
MaeII ACGT 2 cut(s) 568, 1282
MaeIII GTNAC 7 cut(s) 19, 65, 285, 416, 809, 820, 1164
MalI GATC 9 cut(s) 37, 120, 147, 202, 226, 333, 507, 913, 1095
MboI GATC 9 cut(s) 35, 118, 145, 200, 224, 331, 505, 911, 1093
MboII GAAGA 9 cut(s) 201, 276, 317, 350, 646, 723, 1135, 1144, 1249
MfeI CAATTG 2 cut(s) 771, 890
MflI RGATCY 2 cut(s) 200, 224
MhlI GDGCHC 2 cut(s) 950, 1282
MlyI GAGTC 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 643
MseI TTAA 6 cut(s) 44, 312, 629, 666, 672, 827
MslI CAYNNNNRTG 3 cut(s) 209, 277, 463
MspR9I CCNGG 2 cut(s) 450, 855
MunI CAATTG 2 cut(s) 771, 890
MvaI CCWGG 2 cut(s) 450, 855
MwoI GCNNNNNNNGC 3 cut(s) 558, 800, 1177
NdeII GATC 9 cut(s) 35, 118, 145, 200, 224, 331, 505, 911, 1093
NlaIII CATG 6 cut(s) 208, 282, 407, 512, 1027, 1180
NlaIV GGNNCC 3 cut(s) 322, 502, 1293
NmuCI GTSAC 3 cut(s) 19, 285, 416
NspI RCATGY 1 cut(s) 282
OliI CACNNNNGTG 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 643
PfeI GAWTC 5 cut(s) 327, 753, 971, 995, 1033
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 3 cut(s) 805, 1111, 1339
PleI GAGTC 1 cut(s) 85
PmaCI CACGTG 1 cut(s) 1283
PmlI CACGTG 1 cut(s) 1283
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 1283
PpuMI RGGWCCY 3 cut(s) 373, 1247, 1292
PsiI TTATAA 1 cut(s) 59
Psp5II RGGWCCY 3 cut(s) 373, 1247, 1292
Psp6I CCWGG 2 cut(s) 448, 853
PspCI CACGTG 1 cut(s) 1283
PspGI CCWGG 2 cut(s) 448, 853
PspN4I GGNNCC 3 cut(s) 322, 502, 1293
PspPI GGNCC 5 cut(s) 4, 373, 1247, 1292, 1335
PspPPI RGGWCCY 3 cut(s) 373, 1247, 1292
PspXI VCTCGAGB 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 962
PsuI RGATCY 2 cut(s) 200, 224
RseI CAYNNNNRTG 3 cut(s) 209, 277, 463
SaqAI TTAA 6 cut(s) 44, 312, 629, 666, 672, 827
SatI GCNGC 3 cut(s) 804, 1110, 1338
Sau3AI GATC 9 cut(s) 35, 118, 145, 200, 224, 331, 505, 911, 1093
Sau96I GGNCC 5 cut(s) 4, 373, 1247, 1292, 1335
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 450, 855
SduI GDGCHC 2 cut(s) 950, 1282
SfaNI GCATC 3 cut(s) 1078, 1085, 1307
Sfr274I CTCGAG 1 cut(s) 736
SinI GGWCC 3 cut(s) 373, 1247, 1292
SlaI CTCGAG 1 cut(s) 736
SmiMI CAYNNNNRTG 3 cut(s) 209, 277, 463
SmlI CTYRAG 2 cut(s) 736, 1069
SmoI CTYRAG 2 cut(s) 736, 1069
SpeI ACTAGT 1 cut(s) 524
SsiI CCGC 1 cut(s) 1338
SspI AATATT 1 cut(s) 127
SspMI CTAG 3 cut(s) 525, 579, 939
StyD4I CCNGG 2 cut(s) 448, 853
TaaI ACNGT 1 cut(s) 441
TaiI ACGT 2 cut(s) 571, 1285
TaqI TCGA 5 cut(s) 38, 330, 737, 1210, 1351
TauI GCSGC 1 cut(s) 1340
TfiI GAWTC 5 cut(s) 327, 753, 971, 995, 1033
Tru1I TTAA 6 cut(s) 44, 312, 629, 666, 672, 827
Tru9I TTAA 6 cut(s) 44, 312, 629, 666, 672, 827
TscAI CASTG 4 cut(s) 465, 967, 1051, 1061
TseFI GTSAC 3 cut(s) 19, 285, 416
TseI GCWGC 2 cut(s) 803, 1109
Tsp45I GTSAC 3 cut(s) 19, 285, 416
TspDTI ATGAA 5 cut(s) 647, 675, 876, 1029, 1116
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 4 cut(s) 465, 967, 1051, 1061
Van91I CCANNNNNTGG 1 cut(s) 13
VneI GTGCAC 1 cut(s) 1278
VpaK11BI GGWCC 3 cut(s) 373, 1247, 1292
XapI RAATTY 3 cut(s) 167, 308, 454
XceI RCATGY 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 736
XmnI GAANNNNTTC 1 cut(s) 643
XspI CTAG 3 cut(s) 525, 579, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.