AT4G36400

FAD linked oxidases, C-terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17197188 .. 17200932
3745 bp
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UTR
Exon/CDS
Intron
AT4G36400.2

Sequence Viewer

Length: 1680 bp
ATGATGATGCAGAAATTGAGAAGATCGGGGGAGTTCATAAGATTTGGATGCAAATCTCTAATTAGTAGCCGACCAAACAAGGACTCAGTGTCACGTTCTGTGTCAGGCTTTGTGAATCACTACAAATCAAAAGGCAAGCTTTTTGAGCTAAGTGATGGGAACTATAAGACAGAGCTTCATCATCCATGTATTAGTAGAAATGTGGGGATGCTTCTTCAGCAGTATAAGTGTTTTGGATCATCAGCAGCTTCTTTAATTCAGAGAAACCCTTTGTTTTCGTCGTTGGATTCGAAAGATGTTAGCTACTTTAAGGAGATATTAGGTGAAAAAAACGTGGTTGAAGATAAAGAAAGGCTTGAGACTGCTAATACAGATTGGATGCATAAGTACAAAGGATCTAGTAAGCTGATGCTCTTGCCCAAGAATACACAAGAGGTGTCTCAGATACTTGAGTACTGTGATTCGAGGCGTTTAGCAGTTGTTCCTCAAGGAGGAAACACTGGTCTTGTTGGTGGAAGTGTGCCTGTCTTTGATGAGGTGATCGTCAATGTTGGTCTGATGAACAAAATCTTATCTTTTGATGAGGTTAGTGGCGTCTTGGTGTGTGAAGCAGGATGCATATTAGAAAATCTGGCAACTTTCCTTGACACAAAAGGTTTTATTATGCCTCTAGACTTAGGTGCAAAAGGAAGCTGTCATATCGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTAATCCGTTATGGCTCACTTCATGGAACTGTATTGGGTCTAGAAGCTGTCACAGCAAATGGCAACGTGCTTGACATGCTTGGAACTTTACGCAAAGACAATACTGGGTACGACTTAAAACATTTGTTTATTGGTAGTGAAGGATCACTTGGTATTGTAACTAAAGTTTCTATTCTCACACAACCAAAATTGTCTTCTGTAAATTTAGCCTTCATTGCTTGCAAAGATTATCTCAGCTGCCAGAAACTTCTTGTTGAAGCAAAGAGAAATCTTGGAGAGATACTCTCGGCTTTCGAGTTTCTTGATAACAATTCCATGGATTTGGTACTGAACCACCTAGACGGTGTACGTAATCCAGTTTCCTCTTCGGAGAACTTTTATATTCTGATCGAGACAACAGGGAGTGATGAAACTAATGACAGGGAGAAGCTTGAAGCTTTCCTGTTGAAGTCACTGGAAAAAGGTTTAGTTTCTGATGGTGTAATCGCTCAAGACATTAACCAGGCATCCTCATTTTGGCGCATACGAGAGGGTATAACAGAGGCGTTACAGAAAGCAGGAGCTGTTTACAAGTATGACTTATCCTTACCGGTTGAAGAAATTTACAATATTGTTAACGATCTTCGAGGGAGATTAGGTGACTTAGCAAATGTTATGGGATATGGTCACCTTGGAGACGGAAATCTACATTTAAACATCTCAGCCGCGGAATATAACGATAAGCTTTTAGGTTTGATAGAGCCTTATGTCTATGAGTGGACATCAAAGCACCGTGGAAGCATCAGTGCGGAACATGGATTAGGTGTAATGAAAGCTAATGAAATCTTCTACAGCAAATCACCCGAAACTGTTGCATTAATGGCTTCCATTAAAAAGTTGCTGGACCCAAAGGGAATTCTCAACCCTTACAAAGTTCTTCCTCACTCTCTCTTCTCCAACTAA

Protein Analysis

559

Amino Acids

61.44

Weight (kDa)

6.52

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 136 - 271 1.6e-33 FAD binding domain
FAD-oxidase_C PF02913 312 - 551 1.8e-64 FAD linked oxidases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1445
AciI CCGC 3 cut(s) 1443, 1445, 1526
AclWI GGATC 3 cut(s) 244, 403, 889
AcsI RAATTY 3 cut(s) 940, 1338, 1632
AcuI CTGAAG 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 594
AfaI GTAC 5 cut(s) 389, 455, 848, 1065, 1086
AfiI CCNNNNNNNGG 2 cut(s) 491, 1254
AgeI ACCGGT 1 cut(s) 1327
AgsI TTSAA 6 cut(s) 341, 717, 995, 1172, 1186, 1334
AhdI GACNNNNNGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 1239
AjuI GAANNNNNNNTTGG 4 cut(s) 870, 902, 916, 948
Alw26I GTCTC 4 cut(s) 353, 444, 1124, 1407
AlwI GGATC 3 cut(s) 244, 403, 889
AlwNI CAGNNNCTG 1 cut(s) 1301
ApeKI GCWGC 2 cut(s) 245, 975
ApoI RAATTY 3 cut(s) 940, 1338, 1632
AseI ATTAAT 1 cut(s) 1595
AsiGI ACCGGT 1 cut(s) 1327
Asp700I GAANNNNTTC 1 cut(s) 712
AspLEI GCGC 1 cut(s) 1260
AspS9I GGNCC 1 cut(s) 1621
AsuHPI GGTGA 5 cut(s) 335, 550, 1388, 1397, 1569
AsuII TTCGAA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 1621
BaeI ACNNNNGTAYC 2 cut(s) 437, 470
BbsI GAAGAC 1 cut(s) 924
BbvI GCAGC 2 cut(s) 257, 962
BccI CCATC 2 cut(s) 149, 1208
BcgI CGANNNNNNTGC 2 cut(s) 1571, 1605
BciT130I CCWGG 1 cut(s) 1241
BcoDI GTCTC 4 cut(s) 353, 444, 1124, 1407
BfaI CTAG 4 cut(s) 399, 671, 779, 1076
BfmI CTRYAG 1 cut(s) 1567
BisI GCNGC 3 cut(s) 246, 976, 1443
BlsI GCNGC 3 cut(s) 247, 977, 1444
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 1241
Bme18I GGWCC 1 cut(s) 1621
BmeRI GACNNNNNGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 1621
BmiI GGNNCC 1 cut(s) 1623
BmrFI CCNGG 1 cut(s) 1241
BmrI ACTGGG 1 cut(s) 852
BmsI GCATC 7 cut(s) 38, 198, 369, 399, 605, 1253, 1527
BmuI ACTGGG 1 cut(s) 852
BpiI GAAGAC 1 cut(s) 924
BplI GAGNNNNNCTC 4 cut(s) 1005, 1037, 1007, 1039
Bpu14I TTCGAA 1 cut(s) 290
BpuEI CTTGAG 4 cut(s) 377, 470, 471, 1212
BsaAI YACGTR 1 cut(s) 1088
BsaBI GATNNNNATC 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 594
BsaJI CCNNGG 4 cut(s) 1053, 1408, 1443, 1510
BsaWI WCCGGW 1 cut(s) 1327
BsaXI ACNNNNNCTCC 2 cut(s) 1360, 1390
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 1254
Bse118I RCCGGY 1 cut(s) 1327
Bse1I ACTGG 4 cut(s) 505, 847, 1094, 1197
Bse3DI GCAATG 1 cut(s) 951
Bse8I GATNNNNATC 1 cut(s) 52
BseBI CCWGG 1 cut(s) 1241
BseDI CCNNGG 4 cut(s) 1053, 1408, 1443, 1510
BseGI GGATG 6 cut(s) 53, 181, 213, 384, 620, 1244
BseJI GATNNNNATC 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 491, 1254
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 4 cut(s) 99, 455, 985, 1452
BseNI ACTGG 4 cut(s) 505, 847, 1094, 1197
BseXI GCAGC 2 cut(s) 257, 962
Bsh1236I CGCG 1 cut(s) 1445
BshTI ACCGGT 1 cut(s) 1327
BsiSI CCGG 1 cut(s) 1328
BslI CCNNNNNNNGG 2 cut(s) 491, 1254
BsmAI GTCTC 4 cut(s) 353, 444, 1124, 1407
BsmBI CGTCTC 1 cut(s) 1407
Bsp119I TTCGAA 1 cut(s) 290
Bsp143I GATC 7 cut(s) 23, 236, 395, 540, 881, 1125, 1357
Bsp19I CCATGG 1 cut(s) 1053
BspACI CCGC 3 cut(s) 1443, 1445, 1526
BspCNI CTCAG 4 cut(s) 98, 454, 984, 1451
BspFNI CGCG 1 cut(s) 1445
BspLI GGNNCC 1 cut(s) 1623
BspPI GGATC 3 cut(s) 244, 403, 889
BspT104I TTCGAA 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 951
BsrFI RCCGGY 1 cut(s) 1327
BsrI ACTGG 4 cut(s) 505, 847, 1094, 1197
BssAI RCCGGY 1 cut(s) 1327
BssECI CCNNGG 4 cut(s) 1053, 1408, 1443, 1510
BssMI GATC 7 cut(s) 23, 236, 395, 540, 881, 1125, 1357
BssNI GRCGYC 1 cut(s) 594
BssT1I CCWWGG 2 cut(s) 1053, 1408
Bst2UI CCWGG 1 cut(s) 1241
Bst4CI ACNGT 5 cut(s) 458, 769, 1082, 1511, 1588
Bst6I CTCTTC 2 cut(s) 1108, 1673
BstACI GRCGYC 1 cut(s) 594
BstBAI YACGTR 1 cut(s) 1088
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 137, 958
BstDEI CTNAG 7 cut(s) 85, 149, 441, 676, 971, 1381, 1438
BstDSI CCRYGG 3 cut(s) 1053, 1443, 1510
BstEII GGTNACC 1 cut(s) 1403
BstENI CCTNNNNNAGG 1 cut(s) 489
BstF5I GGATG 6 cut(s) 53, 181, 213, 384, 620, 1244
BstFNI CGCG 1 cut(s) 1445
BstHHI GCGC 1 cut(s) 1260
BstKTI GATC 7 cut(s) 26, 239, 398, 543, 884, 1128, 1360
BstMAI GTCTC 4 cut(s) 353, 444, 1124, 1407
BstMBI GATC 7 cut(s) 23, 236, 395, 540, 881, 1125, 1357
BstMWI GCNNNNNNNGC 6 cut(s) 145, 217, 791, 814, 953, 1598
BstNI CCWGG 1 cut(s) 1241
BstNSI RCATGY 1 cut(s) 817
BstPI GGTNACC 1 cut(s) 1403
BstSCI CCNGG 1 cut(s) 1239
BstSFI CTRYAG 1 cut(s) 1567
BstSNI TACGTA 1 cut(s) 1088
BstUI CGCG 1 cut(s) 1445
BstV1I GCAGC 2 cut(s) 257, 962
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 1060
BstYI RGATCY 1 cut(s) 395
BtgI CCRYGG 3 cut(s) 1053, 1443, 1510
BtsCI GGATG 6 cut(s) 53, 181, 213, 384, 620, 1244
BtsIMutI CAGTG 4 cut(s) 93, 498, 1190, 1528
Cac8I GCNNGC 2 cut(s) 137, 958
CaiI CAGNNNCTG 1 cut(s) 1301
CfoI GCGC 1 cut(s) 1260
Cfr10I RCCGGY 1 cut(s) 1327
Cfr13I GGNCC 1 cut(s) 1621
Cfr42I CCGCGG 1 cut(s) 1446
CseI GACGC 2 cut(s) 583, 725
Csp6I GTAC 5 cut(s) 388, 454, 847, 1064, 1085
CspAI ACCGGT 1 cut(s) 1327
CviAII CATG 5 cut(s) 186, 761, 814, 1054, 1532
CviQI GTAC 5 cut(s) 388, 454, 847, 1064, 1085
DdeI CTNAG 7 cut(s) 85, 149, 441, 676, 971, 1381, 1438
DpnI GATC 7 cut(s) 25, 238, 397, 542, 883, 1127, 1359
DpnII GATC 7 cut(s) 23, 236, 395, 540, 881, 1125, 1357
DraI TTTAAA 1 cut(s) 1431
DriI GACNNNNNGTC 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 1108, 1673
Eam1105I GACNNNNNGTC 1 cut(s) 88
EarI CTCTTC 2 cut(s) 1108, 1673
Eco105I TACGTA 1 cut(s) 1088
Eco130I CCWWGG 2 cut(s) 1053, 1408
Eco47I GGWCC 1 cut(s) 1621
Eco57I CTGAAG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 1403
EcoNI CCTNNNNNAGG 1 cut(s) 489
EcoO65I GGTNACC 1 cut(s) 1403
EcoRI GAATTC 1 cut(s) 1632
EcoRII CCWGG 1 cut(s) 1239
EcoT14I CCWWGG 2 cut(s) 1053, 1408
EcoT22I ATGCAT 2 cut(s) 384, 620
ErhI CCWWGG 2 cut(s) 1053, 1408
Esp3I CGTCTC 1 cut(s) 1407
FaeI CATG 5 cut(s) 189, 764, 817, 1057, 1535
FalI AAGNNNNNCTT 8 cut(s) 123, 155, 339, 371, 870, 902, 1301, 1333
FatI CATG 5 cut(s) 185, 760, 813, 1053, 1531
Fnu4HI GCNGC 3 cut(s) 246, 976, 1443
FokI GGATG 6 cut(s) 60, 168, 220, 391, 627, 1231
Fsp4HI GCNGC 3 cut(s) 246, 976, 1443
FspBI CTAG 4 cut(s) 399, 671, 779, 1076
GlaI GCGC 1 cut(s) 1259
GluI GCNGC 3 cut(s) 246, 976, 1443
HapII CCGG 1 cut(s) 1328
HgaI GACGC 2 cut(s) 583, 725
HhaI GCGC 1 cut(s) 1260
Hin1I GRCGYC 1 cut(s) 594
Hin1II CATG 5 cut(s) 189, 764, 817, 1057, 1535
Hin6I GCGC 1 cut(s) 1258
HinP1I GCGC 1 cut(s) 1258
HincII GTYRAC 1 cut(s) 1354
HindII GTYRAC 1 cut(s) 1354
HindIII AAGCTT 4 cut(s) 137, 1166, 1173, 1460
HinfI GANTC 4 cut(s) 83, 115, 287, 461
HpaI GTTAAC 1 cut(s) 1354
HpaII CCGG 1 cut(s) 1328
HphI GGTGA 5 cut(s) 335, 550, 1388, 1397, 1569
Hpy166II GTNNAC 4 cut(s) 1085, 1306, 1354, 1497
Hpy188I TCNGA 6 cut(s) 261, 444, 558, 1108, 1125, 1213
Hpy188III TCNNGA 5 cut(s) 671, 779, 1040, 1129, 1229
Hpy8I GTNNAC 4 cut(s) 1085, 1306, 1354, 1497
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 872, 958
HpyCH4III ACNGT 5 cut(s) 458, 769, 1082, 1511, 1588
HpyCH4IV ACGT 4 cut(s) 94, 333, 804, 1087
HpyCH4V TGCA 7 cut(s) 10, 51, 382, 618, 683, 960, 1592
HpyF10VI GCNNNNNNNGC 6 cut(s) 145, 217, 791, 814, 953, 1598
HpyF3I CTNAG 7 cut(s) 85, 149, 441, 676, 971, 1381, 1438
HpySE526I ACGT 4 cut(s) 94, 333, 804, 1087
Hsp92I GRCGYC 1 cut(s) 594
Hsp92II CATG 5 cut(s) 189, 764, 817, 1057, 1535
HspAI GCGC 1 cut(s) 1258
KspAI GTTAAC 1 cut(s) 1354
KspI CCGCGG 1 cut(s) 1446
Kzo9I GATC 7 cut(s) 23, 236, 395, 540, 881, 1125, 1357
LmnI GCTCC 1 cut(s) 1298
Lsp1109I GCAGC 2 cut(s) 257, 962
LweI GCATC 7 cut(s) 38, 198, 369, 399, 605, 1253, 1527
MaeI CTAG 4 cut(s) 399, 671, 779, 1076
MaeII ACGT 4 cut(s) 94, 333, 804, 1087
MaeIII GTNAC 7 cut(s) 90, 787, 895, 1188, 1284, 1376, 1403
MalI GATC 7 cut(s) 25, 238, 397, 542, 883, 1127, 1359
MboI GATC 7 cut(s) 23, 236, 395, 540, 881, 1125, 1357
MflI RGATCY 1 cut(s) 395
MluCI AATT 8 cut(s) 14, 60, 255, 926, 940, 1048, 1338, 1632
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 264
Mph1103I ATGCAT 2 cut(s) 384, 620
MroXI GAANNNNTTC 1 cut(s) 712
MseI TTAA 8 cut(s) 254, 309, 854, 1236, 1353, 1430, 1595, 1608
MslI CAYNNNNRTG 1 cut(s) 702
MspA1I CMGCKG 2 cut(s) 975, 1445
MspI CCGG 1 cut(s) 1328
MspR9I CCNGG 1 cut(s) 1241
MvaI CCWGG 1 cut(s) 1241
MvnI CGCG 1 cut(s) 1445
MwoI GCNNNNNNNGC 6 cut(s) 145, 217, 791, 814, 953, 1598
NcoI CCATGG 1 cut(s) 1053
NdeII GATC 7 cut(s) 23, 236, 395, 540, 881, 1125, 1357
NlaIII CATG 5 cut(s) 189, 764, 817, 1057, 1535
NlaIV GGNNCC 1 cut(s) 1623
NmeAIII GCCGAG 1 cut(s) 1004
NmuCI GTSAC 5 cut(s) 90, 787, 1188, 1376, 1403
NsiI ATGCAT 2 cut(s) 384, 620
NspI RCATGY 1 cut(s) 817
NspV TTCGAA 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 712
PfeI GAWTC 3 cut(s) 115, 287, 461
PinAI ACCGGT 1 cut(s) 1327
PkrI GCNGC 3 cut(s) 247, 977, 1444
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 1088
PshBI ATTAAT 1 cut(s) 1595
Psp6I CCWGG 1 cut(s) 1239
PspEI GGTNACC 1 cut(s) 1403
PspGI CCWGG 1 cut(s) 1239
PspN4I GGNNCC 1 cut(s) 1623
PspPI GGNCC 1 cut(s) 1621
PstNI CAGNNNCTG 1 cut(s) 1301
PsuI RGATCY 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 975
RsaI GTAC 5 cut(s) 389, 455, 848, 1065, 1086
RsaNI GTAC 5 cut(s) 388, 454, 847, 1064, 1085
RseI CAYNNNNRTG 1 cut(s) 702
SacII CCGCGG 1 cut(s) 1446
SaqAI TTAA 8 cut(s) 254, 309, 854, 1236, 1353, 1430, 1595, 1608
SatI GCNGC 3 cut(s) 246, 976, 1443
Sau3AI GATC 7 cut(s) 23, 236, 395, 540, 881, 1125, 1357
Sau96I GGNCC 1 cut(s) 1621
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 1241
SfaNI GCATC 7 cut(s) 38, 198, 369, 399, 605, 1253, 1527
SfcI CTRYAG 1 cut(s) 1567
Sfr303I CCGCGG 1 cut(s) 1446
SfuI TTCGAA 1 cut(s) 290
SgrBI CCGCGG 1 cut(s) 1446
SinI GGWCC 1 cut(s) 1621
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 4 cut(s) 356, 449, 486, 1227
SmoI CTYRAG 4 cut(s) 356, 449, 486, 1227
SnaBI TACGTA 1 cut(s) 1088
Sse9I AATT 8 cut(s) 14, 60, 255, 926, 940, 1048, 1338, 1632
SsiI CCGC 3 cut(s) 1443, 1445, 1526
SspI AATATT 1 cut(s) 1348
SspMI CTAG 4 cut(s) 399, 671, 779, 1076
StyD4I CCNGG 1 cut(s) 1239
StyI CCWWGG 2 cut(s) 1053, 1408
TaaI ACNGT 5 cut(s) 458, 769, 1082, 1511, 1588
TaiI ACGT 4 cut(s) 97, 336, 807, 1090
TaqI TCGA 5 cut(s) 290, 464, 1032, 1128, 1363
TasI AATT 8 cut(s) 14, 60, 255, 926, 940, 1048, 1338, 1632
TatI WGTACW 2 cut(s) 387, 453
TauI GCSGC 1 cut(s) 1445
TfiI GAWTC 3 cut(s) 115, 287, 461
Tru1I TTAA 8 cut(s) 254, 309, 854, 1236, 1353, 1430, 1595, 1608
Tru9I TTAA 8 cut(s) 254, 309, 854, 1236, 1353, 1430, 1595, 1608
TscAI CASTG 4 cut(s) 93, 505, 1197, 1528
TseFI GTSAC 5 cut(s) 90, 787, 1188, 1376, 1403
TseI GCWGC 2 cut(s) 245, 975
Tsp45I GTSAC 5 cut(s) 90, 787, 1188, 1376, 1403
TspDTI ATGAA 8 cut(s) 25, 167, 575, 749, 940, 1161, 1562, 1572
TspGWI ACGGA 2 cut(s) 734, 1431
TspRI CASTG 4 cut(s) 93, 505, 1197, 1528
VpaK11BI GGWCC 1 cut(s) 1621
VspI ATTAAT 1 cut(s) 1595
XagI CCTNNNNNAGG 1 cut(s) 489
XapI RAATTY 3 cut(s) 940, 1338, 1632
XbaI TCTAGA 2 cut(s) 670, 778
XceI RCATGY 1 cut(s) 817
XmnI GAANNNNTTC 1 cut(s) 712
XspI CTAG 4 cut(s) 399, 671, 779, 1076
ZrmI AGTACT 1 cut(s) 455
Zsp2I ATGCAT 2 cut(s) 384, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.