Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018554.1

Orthogroup ID

OG0009166

Physical Location & Seq

Genomic Coordinates Reverse (-)

9583 .. 13251

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018554.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atggagaagctgagagccaccggtcgttttctcagatactcacctaaagtttcagtctttgatcggcgattgagctctaattccggcaagtcaatccacagctccgcttcaggttatgggaatggctttggcaagaaatgtagagatgatgttatccgcaagtggaatgttaggacatgttttggcttgtatggatatcagggaaaaaaattcagggattgtatggaaaggggtgttcttgaggatacaaggagaatccagcatcgaggttttggttcgctggccgagaaggtgcagaggaatgcttctttttcagcattgaattctgatgatattagccatttcaaggggatattaggtgagaagaatgtagttgaggatgaagagaggctgactattgctaatacagattggatgcacaagtacagaggctcgagtaagcttctgctgcaaccccggtccactgaggaggtctcacagattcttaaatactgtaattccagaaacttggctgttgttccccaaggtggaaatactggtcttgtgggtggaagtgttcctgtttttgatgaagtggttgtcaatatgagtttgatgaataacgtaatatcttttgacaaggtgagtggtatactcgtatgcgaggcaggatgcatattggaaaatctgattactttcttggataaccaaggatttattatgccactggacttaggtgcgaaaggaagctgccagattggtggaaatgtttcaaccaatgcgggtggtttgcgccttgtgcgctatggatcacttcatggaaccgtacttggtctggaagttgttttggctaatggtgatgttcttgacatgcttgggactttacggaaagataatactggatatgacctaaagcatttgttcataggaagtgaaggatctttgggaattgtgaccaaggtttccatacttacccctccaaagttattttcagtgaatgtagctttcctcgcatgccaagactactttagctgccagaaacttctagtggaagcaaagagaaaacttggggagattctatctgcttttgaattcttggatagccatgctctggatttggttctgaatcatttggatggcgttcgcaatccattacctcccacaattcacaacttttatgttttgattgagacaacgggcagtgatgaaacttatgatagagagaagcttgaagccttcctagttcatgccatggaaggtggtttgatttctgatggagctatagcacaagatataaaccaagcatcagcattctggtatatacgggaggtaggctttgtttatggaacagagaattgtgatatttacagttattcatggggtgcttttcgttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004457 GO:0004458 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006089 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016898 GO:0019516 GO:0019752 GO:0022900 GO:0022904 GO:0032787 GO:0036094 GO:0043094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0047545 GO:0048037 GO:0050660 GO:0050662 GO:0051990 GO:0055114 GO:0071704 GO:0071949 GO:0097159 GO:1901265 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD-oxidase_C FAD_binding_4

Protein Analysis

458

Amino Acids

50.55

Weight (kDa)

6.8

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36400 AT4G36400
fragaria_vesca	FvH4_1g12310 FvH4_1g12310 FvH4_1g12310
malus_domestica	MD15G1251700.v1.1
prunus_persica	Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100131
rosa_laevigata	RLG00000016939
rosa_multiflora	Rmu_sc0018554.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142540
rosa_rugosa	Rorug02G0085900
rosa_samantha	Rh2AG134600 Rh2BG138300 Rh2CG140100 Rh2DG140300
rosa_wichuraiana	Rw2G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1090
AccI	GTMKAC	1 cut(s)	631
AciI	CCGC	3 cut(s)	105, 157, 761
AclWI	GGATC	2 cut(s)	796, 925
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	3 cut(s)	209, 322, 1070
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	425, 807
AfiI	CCNNNNNNNGG	3 cut(s)	346, 527, 1090
AflIII	ACRYGT	1 cut(s)	176
AgeI	ACCGGT	1 cut(s)	20
AgsI	TTSAA	5 cut(s)	322, 346, 753, 1070, 1211
AjuI	GAANNNNNNNTTGG	2 cut(s)	952, 984
AluBI	AGCT	9 cut(s)	10, 75, 102, 442, 729, 983, 1011, 1207, 1259
AluI	AGCT	9 cut(s)	10, 75, 102, 442, 729, 983, 1011, 1207, 1259
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	478, 1163
AlwI	GGATC	2 cut(s)	796, 925
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	448, 729, 1011
ApoI	RAATTY	3 cut(s)	209, 322, 1070
AsiGI	ACCGGT	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	2 cut(s)	774, 783
AspS9I	GGNCC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	4 cut(s)	33, 371, 634, 848
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	435, 716, 998
BccI	CCATC	2 cut(s)	1109, 1247
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	478, 1163
BfaI	CTAG	2 cut(s)	1025, 1220
BfmI	CTRYAG	1 cut(s)	1260
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	3 cut(s)	449, 730, 1012
BlsI	GCNGC	3 cut(s)	450, 731, 1013
Bme1390I	CCNGG	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	459
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	1 cut(s)	802
BmrFI	CCNGG	1 cut(s)	457
BmsI	GCATC	4 cut(s)	271, 405, 641, 1292
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	457
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	5 cut(s)	455, 523, 688, 936, 1230
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 527, 1090
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	3 cut(s)	541, 711, 883
BseDI	CCNNGG	5 cut(s)	455, 523, 688, 936, 1230
BseGI	GGATG	4 cut(s)	385, 420, 656, 1120
BseLI	CCNNNNNNNGG	3 cut(s)	346, 527, 1090
BseMII	CTCAG	2 cut(s)	46, 456
BseNI	ACTGG	3 cut(s)	541, 711, 883
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	435, 716, 998
BsgI	GTGCAG	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	284
BshTI	ACCGGT	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	3 cut(s)	21, 84, 457
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	3 cut(s)	346, 527, 1090
BsmAI	GTCTC	2 cut(s)	478, 1163
BsmFI	GGGAC	1 cut(s)	871
BsmI	GAATGC	2 cut(s)	307, 1289
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	61, 788, 917
Bsp19I	CCATGG	1 cut(s)	1230
BspACI	CCGC	3 cut(s)	105, 157, 761
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	45, 457
BspHI	TCATGA	1 cut(s)	1373
BspLI	GGNNCC	1 cut(s)	802
BspPI	GGATC	2 cut(s)	796, 925
BspTNI	GGTCTC	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	541, 711, 883
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	5 cut(s)	455, 523, 688, 936, 1230
BssMI	GATC	3 cut(s)	61, 788, 917
BssNAI	GTATAC	1 cut(s)	632
BssT1I	CCWWGG	4 cut(s)	523, 688, 936, 1230
Bst1107I	GTATAC	1 cut(s)	632
Bst4CI	ACNGT	3 cut(s)	494, 805, 1349
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	282, 994
BstDEI	CTNAG	4 cut(s)	11, 32, 465, 712
BstDSI	CCRYGG	1 cut(s)	1230
BstF5I	GGATG	4 cut(s)	385, 420, 656, 1120
BstHHI	GCGC	2 cut(s)	774, 783
BstKTI	GATC	3 cut(s)	64, 791, 920
BstMAI	GTCTC	2 cut(s)	478, 1163
BstMBI	GATC	3 cut(s)	61, 788, 917
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	4 cut(s)	448, 778, 780, 989
BstNSI	RCATGY	3 cut(s)	180, 853, 996
BstSCI	CCNGG	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	1260
BstV1I	GCAGC	3 cut(s)	435, 716, 998
BstX2I	RGATCY	1 cut(s)	917
BstXI	CCANNNNNNTGG	2 cut(s)	508, 740
BstYI	RGATCY	1 cut(s)	917
BstZ17I	GTATAC	1 cut(s)	632
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	1230
BtsCI	GGATG	4 cut(s)	385, 420, 656, 1120
BtsI	GCAGTG	1 cut(s)	1186
BtsIMutI	CAGTG	4 cut(s)	462, 704, 978, 1186
Cac8I	GCNNGC	2 cut(s)	282, 994
CciI	TCATGA	1 cut(s)	1373
CfoI	GCGC	2 cut(s)	774, 783
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	424, 806
CspAI	ACCGGT	1 cut(s)	20
CspCI	CAANNNNNGTGG	4 cut(s)	607, 642, 745, 780
CviAII	CATG	9 cut(s)	177, 797, 850, 993, 1085, 1226, 1231, 1356, 1374
CviQI	GTAC	2 cut(s)	424, 806
DdeI	CTNAG	4 cut(s)	11, 32, 465, 712
DpnI	GATC	3 cut(s)	63, 790, 919
DpnII	GATC	3 cut(s)	61, 788, 917
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	4 cut(s)	523, 688, 936, 1230
Eco24I	GRGCYC	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	75
EcoRI	GAATTC	2 cut(s)	322, 1070
EcoRV	GATATC	1 cut(s)	197
EcoT14I	CCWWGG	4 cut(s)	523, 688, 936, 1230
EcoT22I	ATGCAT	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	4 cut(s)	523, 688, 936, 1230
FaeI	CATG	9 cut(s)	180, 800, 853, 996, 1088, 1229, 1234, 1359, 1377
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	9 cut(s)	176, 796, 849, 992, 1084, 1225, 1230, 1355, 1373
FauI	CCCGC	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	3 cut(s)	449, 730, 1012
FokI	GGATG	4 cut(s)	392, 427, 663, 1127
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	449, 730, 1012
FspBI	CTAG	2 cut(s)	1025, 1220
GlaI	GCGC	2 cut(s)	773, 782
GluI	GCNGC	3 cut(s)	449, 730, 1012
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	3 cut(s)	21, 84, 457
HhaI	GCGC	2 cut(s)	774, 783
Hin1II	CATG	9 cut(s)	180, 800, 853, 996, 1088, 1229, 1234, 1359, 1377
Hin6I	GCGC	2 cut(s)	772, 781
HinP1I	GCGC	2 cut(s)	772, 781
HindIII	AAGCTT	2 cut(s)	440, 1205
HinfI	GANTC	4 cut(s)	255, 481, 1054, 1105
HpaII	CCGG	3 cut(s)	21, 84, 457
HphI	GGTGA	4 cut(s)	33, 371, 634, 848
Hpy166II	GTNNAC	2 cut(s)	462, 632
Hpy188I	TCNGA	5 cut(s)	35, 328, 669, 1104, 1252
Hpy188III	TCNNGA	6 cut(s)	239, 501, 815, 845, 1091, 1374
Hpy8I	GTNNAC	2 cut(s)	462, 632
HpyAV	CCTTC	4 cut(s)	283, 908, 1225, 1229
HpyCH4III	ACNGT	3 cut(s)	494, 805, 1349
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	4 cut(s)	295, 418, 451, 654
HpyF10VI	GCNNNNNNNGC	4 cut(s)	448, 778, 780, 989
HpyF3I	CTNAG	4 cut(s)	11, 32, 465, 712
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	9 cut(s)	180, 800, 853, 996, 1088, 1229, 1234, 1359, 1377
HspAI	GCGC	2 cut(s)	772, 781
Kzo9I	GATC	3 cut(s)	61, 788, 917
LmnI	GCTCC	2 cut(s)	107, 1256
Lsp1109I	GCAGC	3 cut(s)	435, 716, 998
LweI	GCATC	4 cut(s)	271, 405, 641, 1292
MaeI	CTAG	2 cut(s)	1025, 1220
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	1 cut(s)	931
MalI	GATC	3 cut(s)	63, 790, 919
MboI	GATC	3 cut(s)	61, 788, 917
MboII	GAAGA	2 cut(s)	376, 395
MflI	RGATCY	1 cut(s)	917
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	8 cut(s)	79, 209, 322, 496, 927, 1070, 1143, 1333
Mph1103I	ATGCAT	1 cut(s)	656
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	1 cut(s)	1113
MspI	CCGG	3 cut(s)	21, 84, 457
MspR9I	CCNGG	1 cut(s)	457
Mva1269I	GAATGC	2 cut(s)	307, 1289
MwoI	GCNNNNNNNGC	4 cut(s)	448, 778, 780, 989
NciI	CCSGG	1 cut(s)	457
NcoI	CCATGG	1 cut(s)	1230
NdeII	GATC	3 cut(s)	61, 788, 917
NlaIII	CATG	9 cut(s)	180, 800, 853, 996, 1088, 1229, 1234, 1359, 1377
NlaIV	GGNNCC	1 cut(s)	802
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	931
NsiI	ATGCAT	1 cut(s)	656
NspI	RCATGY	3 cut(s)	180, 853, 996
PaeI	GCATGC	1 cut(s)	996
PaeR7I	CTCGAG	1 cut(s)	433
PagI	TCATGA	1 cut(s)	1373
PciI	ACATGT	1 cut(s)	176
PctI	GAATGC	2 cut(s)	307, 1289
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	4 cut(s)	255, 481, 1054, 1105
PflMI	CCANNNNNTGG	1 cut(s)	1090
PinAI	ACCGGT	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	450, 731, 1013
PscI	ACATGT	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	802
PspPI	GGNCC	1 cut(s)	459
PspXI	VCTCGAGB	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	917
RsaI	GTAC	2 cut(s)	425, 807
RsaNI	GTAC	2 cut(s)	424, 806
RseI	CAYNNNNRTG	1 cut(s)	1113
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	3 cut(s)	449, 730, 1012
Sau3AI	GATC	3 cut(s)	61, 788, 917
Sau96I	GGNCC	1 cut(s)	459
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	4 cut(s)	271, 405, 641, 1292
SfcI	CTRYAG	1 cut(s)	1260
Sfr274I	CTCGAG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	459
SlaI	CTCGAG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	1113
SmlI	CTYRAG	2 cut(s)	239, 433
SmoI	CTYRAG	2 cut(s)	239, 433
SphI	GCATGC	1 cut(s)	996
Sse9I	AATT	8 cut(s)	79, 209, 322, 496, 927, 1070, 1143, 1333
SsiI	CCGC	3 cut(s)	105, 157, 761
SspMI	CTAG	2 cut(s)	1025, 1220
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	455
StyI	CCWWGG	4 cut(s)	523, 688, 936, 1230
TaaI	ACNGT	3 cut(s)	494, 805, 1349
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	2 cut(s)	265, 434
TasI	AATT	8 cut(s)	79, 209, 322, 496, 927, 1070, 1143, 1333
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	4 cut(s)	255, 481, 1054, 1105
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	4 cut(s)	469, 711, 978, 1186
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	3 cut(s)	448, 729, 1011
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	9 cut(s)	396, 585, 611, 785, 892, 1200, 1214, 1344, 1362
TspGWI	ACGGA	1 cut(s)	880
TspRI	CASTG	4 cut(s)	469, 711, 978, 1186
Van91I	CCANNNNNTGG	1 cut(s)	1090
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	3 cut(s)	209, 322, 1070
XceI	RCATGY	3 cut(s)	180, 853, 996
XhoI	CTCGAG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	2 cut(s)	1025, 1220
Zsp2I	ATGCAT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.