Prupe.7G162700_v2.0.a1

D-2-hydroxyglutarate dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
16793415 .. 16800211
6797 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G162700.4

Sequence Viewer

Length: 1734 bp
ATGGAGAGGTTGAGATTGAGAGCTACCGGTAGTTTCTTCAGATACTGTTCTAATAGATCACTCTTTGATCGCCGATTGAACATTAATTCTGTGAATTCAATCCACAACTCTACTTCAGGTTATGCGCATGGCTTTGGCAAGAATTGTAGAGATTTCCATTTCTTTAGTGATAATCACAAGTGGAATGTTCAGACATGTTTTGGCTTCGTAAGATATCAAGGAGAGACTTTCCGAGATTCTACGGAAAAGGGTCTTCTTGAAAAGACAAGGAGATTTCAGTACCGAGGTTTTGGTTCTTTGGCGGCAAAGGTTCAGAGGAATCCTTCTTTTTCAACATTAAATTCTGATGATATCAGCTATTTTAAGGAAATATTAGGGGAGAAGGGTGTAATTGAGGATGAAGAGTGGCTGGCGACTGCAAACACAGACTGGATGCACAAATACAAAGGCTCAAGTAAGCTTCTGCTGCAACCTCGGTCCACTGAGGAGGTCTCACAGATTCTTAAATATTGTAATTCCAGATGCTTGGCTGTTGTTCCTCAAGGTGGGAATACTGGTCTTGTGGGCGGAAGTGTTCCAGTTTTTGATGAAGTGATTGTCAATATGAGTTTGATGAACAACATAATATCTTTTGACAAGGTGAGTGGTATTCTGGTATGCGAGGGAGGATGCATTTTGGAAAATCTGATTACTTTCTTGGACAACCAAGGATTTATTATGCCACTGGACTTAGGTGCAAAAGGAAGCTGTCAGATTGGTGGAAACGTTTCGACCAATGCAGGTGGTTTGCGCCTTGTCCGCTATGGATCACTTCATGGAAACGTACTTGGTCTAGAAGTTGTTTTGGCTGATGGTAATGTTATTGACATGCTTGGGACTTTACGCAAAGATAATACCGGGTATGACCTAAAGCATTTGTTCATAGGCAGTGAAGGATCTTTGGGAATTGTATCCAAGGTTTCCATACTTACCCCTCCAAAGTTATTTTCAGTAAATGTAGCTTTCCTTGCATGCAGCGATTACTTTAGCTGCCAGAAACTTCTAATGGAAGCAAAGAGGAAACTTGGGGAAATTCTATCTGCCTTTGAATTTTTGGATAGCAAGTCATTGGATTTGGTTCTAAATCACTTAGATGGTGTTCGGAACCCATTACCTCCCACATTGCACAAATTTTATATTTTGATTGAGACAACAGGCAGTGATGAACCTTACGACAGACAGAAGCTCGAGGGCTTCCTGCTTCATGCAATGGAAGCTGGTTTGATTTCTGACGGAGCTCTAGCACAAGACATAAACCAAGCATCATCATTCTGGCGTATACGCGAGGGAATACCAGAAGCATTGATGAAAGCAGGAGCTGTTTACAAATACGATTTATCATTACCTGTTGAAAAGATGTATGATCTTGTTGAGGAAATGAGAACTAGACTCAGTGATTCAGCTAATGTAGTTGGATATGGCCATCTTGGAGATGGTAATTTGCATCTTAATATTTCAACTGCACAGTATGATGATGGGATTTTGACACAAATCGAACCCTTTGTCTACGAGTGGACATCTAAGCATCGTGGGAGCATTAGTGCAGAGCACGGCCTTGGACTGATGAAAGCTAATGAGATTTTCTACAGCAAGCCAACTGCTACTGTGAGCTTGATGGCTTCCATCAAGAAAATGCTGGACCCCAAAGGGATACTCAACCCATATAAAGTTCTTCCGCACTCTCTTAGTTCTTAG

Protein Analysis

578

Amino Acids

64.04

Weight (kDa)

6.58

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 770
Acc16I TGCGCA 1 cut(s) 126
Acc36I ACCTGC 1 cut(s) 770
AccI GTMKAC 2 cut(s) 1318, 1545
AccII CGCG 1 cut(s) 1323
AciI CCGC 4 cut(s) 302, 567, 799, 1715
AclI AACGTT 1 cut(s) 765
AclWI GGATC 2 cut(s) 814, 943
AcoI YGGCCR 1 cut(s) 1459
AcsI RAATTY 5 cut(s) 94, 340, 1071, 1088, 1169
AcuI CTGAAG 2 cut(s) 22, 99
AfaI GTAC 2 cut(s) 281, 825
AfiI CCNNNNNNNGG 1 cut(s) 545
AflIII ACRYGT 1 cut(s) 194
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 7 cut(s) 79, 99, 260, 333, 1088, 1391, 1497
AjuI GAANNNNNNNTTGG 2 cut(s) 970, 1002
Alw21I GWGCWC 2 cut(s) 1279, 1590
Alw26I GTCTC 3 cut(s) 218, 496, 1181
AlwI GGATC 2 cut(s) 814, 943
AlwNI CAGNNNCTG 2 cut(s) 45, 1358
Ama87I CYCGRG 1 cut(s) 1226
AoxI GGCC 2 cut(s) 1459, 1591
ApeKI GCWGC 3 cut(s) 466, 1014, 1029
ApoI RAATTY 5 cut(s) 94, 340, 1071, 1088, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 1527, 1559
AseI ATTAAT 1 cut(s) 84
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 766
AspLEI GCGC 2 cut(s) 127, 792
AspS9I GGNCC 2 cut(s) 477, 1678
AsuC2I CCSGG 1 cut(s) 898
AsuHPI GGTGA 1 cut(s) 652
AvaI CYCGRG 1 cut(s) 1226
AvaII GGWCC 2 cut(s) 477, 1678
BalI TGGCCA 1 cut(s) 1461
BanII GRGCYC 1 cut(s) 1279
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 1279, 1590
BbvI GCAGC 3 cut(s) 453, 1016, 1026
BccI CCATC 7 cut(s) 845, 1127, 1466, 1470, 1508, 1648, 1670
BceAI ACGGC 1 cut(s) 1606
BciVI GTATCC 2 cut(s) 961, 1683
BcnI CCSGG 1 cut(s) 898
BcoDI GTCTC 3 cut(s) 218, 496, 1181
BfaI CTAG 3 cut(s) 833, 1280, 1425
BfmI CTRYAG 1 cut(s) 1624
BfuAI ACCTGC 1 cut(s) 770
BfuI GTATCC 2 cut(s) 961, 1683
BisI GCNGC 4 cut(s) 303, 467, 1015, 1030
BlsI GCNGC 4 cut(s) 304, 468, 1016, 1031
Bme1390I CCNGG 1 cut(s) 898
Bme18I GGWCC 2 cut(s) 477, 1678
BmeT110I CYCGRG 1 cut(s) 1226
BmgT120I GGNCC 2 cut(s) 477, 1678
BmiI GGNNCC 2 cut(s) 1145, 1680
BmrFI CCNGG 1 cut(s) 898
BmsI GCATC 6 cut(s) 423, 512, 659, 1310, 1492, 1573
BpiI GAAGAC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 476, 508
BpuEI CTTGAG 2 cut(s) 436, 525
BpuMI CCSGG 1 cut(s) 898
BsaI GGTCTC 1 cut(s) 496
BsaJI CCNNGG 5 cut(s) 283, 473, 706, 954, 1594
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 1564, 1594
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 4 cut(s) 434, 559, 578, 729
Bse3DI GCAATG 2 cut(s) 1160, 1254
BseDI CCNNGG 5 cut(s) 283, 473, 706, 954, 1594
BseGI GGATG 3 cut(s) 403, 438, 674
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMI GCAATG 2 cut(s) 1160, 1254
BseMII CTCAG 2 cut(s) 474, 1444
BseNI ACTGG 4 cut(s) 434, 559, 578, 729
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 3 cut(s) 453, 1016, 1026
BsgI GTGCAG 2 cut(s) 1485, 1602
Bsh1236I CGCG 1 cut(s) 1323
BshFI GGCC 2 cut(s) 1461, 1593
BshTI ACCGGT 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 1279, 1590
BsiHKCI CYCGRG 1 cut(s) 1226
BsiSI CCGG 2 cut(s) 27, 897
BslFI GGGAC 1 cut(s) 889
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 3 cut(s) 218, 496, 1181
BsmFI GGGAC 1 cut(s) 889
BsnI GGCC 2 cut(s) 1461, 1593
Bso31I GGTCTC 1 cut(s) 496
BsoBI CYCGRG 1 cut(s) 1226
Bsp1286I GDGCHC 2 cut(s) 1279, 1590
Bsp143I GATC 5 cut(s) 56, 67, 806, 935, 1402
BspACI CCGC 4 cut(s) 302, 567, 799, 1715
BspANI GGCC 2 cut(s) 1461, 1593
BspCNI CTCAG 2 cut(s) 475, 1443
BspFNI CGCG 1 cut(s) 1323
BspLI GGNNCC 2 cut(s) 1145, 1680
BspMI ACCTGC 1 cut(s) 770
BspPI GGATC 2 cut(s) 814, 943
BspTNI GGTCTC 1 cut(s) 496
BsrDI GCAATG 2 cut(s) 1160, 1254
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 4 cut(s) 434, 559, 578, 729
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 5 cut(s) 283, 473, 706, 954, 1594
BssMI GATC 5 cut(s) 56, 67, 806, 935, 1402
BssNAI GTATAC 1 cut(s) 1319
BssT1I CCWWGG 3 cut(s) 706, 954, 1594
Bst1107I GTATAC 1 cut(s) 1319
Bst4CI ACNGT 3 cut(s) 47, 1506, 1645
Bst6I CTCTTC 1 cut(s) 396
BstC8I GCNNGC 3 cut(s) 411, 1012, 1631
BstDEI CTNAG 7 cut(s) 483, 730, 1129, 1430, 1560, 1724, 1731
BstF5I GGATG 3 cut(s) 403, 438, 674
BstFNI CGCG 1 cut(s) 1323
BstHHI GCGC 2 cut(s) 127, 792
BstKTI GATC 5 cut(s) 59, 70, 809, 938, 1405
BstMAI GTCTC 3 cut(s) 218, 496, 1181
BstMBI GATC 5 cut(s) 56, 67, 806, 935, 1402
BstMWI GCNNNNNNNGC 4 cut(s) 466, 798, 1007, 1253
BstNSI RCATGY 3 cut(s) 198, 871, 1014
BstSCI CCNGG 1 cut(s) 896
BstSFI CTRYAG 1 cut(s) 1624
BstUI CGCG 1 cut(s) 1323
BstV1I GCAGC 3 cut(s) 453, 1016, 1026
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 935
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 1 cut(s) 935
BstZ17I GTATAC 1 cut(s) 1319
BsuI GTATCC 2 cut(s) 961, 1683
BsuRI GGCC 2 cut(s) 1461, 1593
BtsCI GGATG 3 cut(s) 403, 438, 674
BtsI GCAGTG 2 cut(s) 934, 1204
BtsIMutI CAGTG 5 cut(s) 480, 722, 934, 1204, 1438
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 3 cut(s) 411, 1012, 1631
CaiI CAGNNNCTG 2 cut(s) 45, 1358
CfoI GCGC 2 cut(s) 127, 792
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 477, 1678
Csp6I GTAC 2 cut(s) 280, 824
CspAI ACCGGT 1 cut(s) 26
CspCI CAANNNNNGTGG 4 cut(s) 625, 660, 763, 798
CviAII CATG 6 cut(s) 128, 195, 815, 868, 1011, 1244
CviQI GTAC 2 cut(s) 280, 824
DdeI CTNAG 7 cut(s) 483, 730, 1129, 1430, 1560, 1724, 1731
DpnI GATC 5 cut(s) 58, 69, 808, 937, 1404
DpnII GATC 5 cut(s) 56, 67, 806, 935, 1402
EaeI YGGCCR 1 cut(s) 1459
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EciI GGCGGA 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 1277
Eco130I CCWWGG 3 cut(s) 706, 954, 1594
Eco24I GRGCYC 1 cut(s) 1279
Eco31I GGTCTC 1 cut(s) 496
Eco32I GATATC 2 cut(s) 215, 352
Eco47I GGWCC 2 cut(s) 477, 1678
Eco53kI GAGCTC 1 cut(s) 1277
Eco57I CTGAAG 2 cut(s) 22, 99
Eco88I CYCGRG 1 cut(s) 1226
EcoICRI GAGCTC 1 cut(s) 1277
EcoRI GAATTC 1 cut(s) 94
EcoRV GATATC 2 cut(s) 215, 352
EcoT14I CCWWGG 3 cut(s) 706, 954, 1594
EcoT22I ATGCAT 1 cut(s) 674
EcoT38I GRGCYC 1 cut(s) 1279
ErhI CCWWGG 3 cut(s) 706, 954, 1594
FaeI CATG 6 cut(s) 131, 198, 818, 871, 1014, 1247
FaqI GGGAC 1 cut(s) 889
FatI CATG 6 cut(s) 127, 194, 814, 867, 1010, 1243
FblI GTMKAC 2 cut(s) 1318, 1545
Fnu4HI GCNGC 4 cut(s) 303, 467, 1015, 1030
FokI GGATG 3 cut(s) 410, 445, 681
FriOI GRGCYC 1 cut(s) 1279
Fsp4HI GCNGC 4 cut(s) 303, 467, 1015, 1030
FspAI RTGCGCAY 1 cut(s) 126
FspBI CTAG 3 cut(s) 833, 1280, 1425
FspI TGCGCA 1 cut(s) 126
GlaI GCGC 2 cut(s) 126, 791
GluI GCNGC 4 cut(s) 303, 467, 1015, 1030
HaeIII GGCC 2 cut(s) 1461, 1593
HapII CCGG 2 cut(s) 27, 897
HhaI GCGC 2 cut(s) 127, 792
Hin1II CATG 6 cut(s) 131, 198, 818, 871, 1014, 1247
Hin6I GCGC 2 cut(s) 125, 790
HinP1I GCGC 2 cut(s) 125, 790
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 5 cut(s) 236, 319, 499, 1428, 1436
HpaII CCGG 2 cut(s) 27, 897
HphI GGTGA 1 cut(s) 652
Hpy166II GTNNAC 5 cut(s) 480, 1319, 1363, 1546, 1554
Hpy188I TCNGA 9 cut(s) 41, 192, 233, 315, 346, 687, 753, 1143, 1270
Hpy188III TCNNGA 4 cut(s) 257, 519, 833, 1666
Hpy8I GTNNAC 5 cut(s) 480, 1319, 1363, 1546, 1554
HpyAV CCTTC 3 cut(s) 333, 376, 926
HpyCH4III ACNGT 3 cut(s) 47, 1506, 1645
HpyCH4IV ACGT 2 cut(s) 765, 822
HpyF10VI GCNNNNNNNGC 4 cut(s) 466, 798, 1007, 1253
HpyF3I CTNAG 7 cut(s) 483, 730, 1129, 1430, 1560, 1724, 1731
HpySE526I ACGT 2 cut(s) 765, 822
Hsp92II CATG 6 cut(s) 131, 198, 818, 871, 1014, 1247
HspAI GCGC 2 cut(s) 125, 790
Kzo9I GATC 5 cut(s) 56, 67, 806, 935, 1402
LmnI GCTCC 3 cut(s) 1274, 1355, 1572
Lsp1109I GCAGC 3 cut(s) 453, 1016, 1026
LweI GCATC 6 cut(s) 423, 512, 659, 1310, 1492, 1573
MaeI CTAG 3 cut(s) 833, 1280, 1425
MaeII ACGT 2 cut(s) 765, 822
MalI GATC 5 cut(s) 58, 69, 808, 937, 1404
MboI GATC 5 cut(s) 56, 67, 806, 935, 1402
MboII GAAGA 4 cut(s) 28, 245, 413, 1703
MflI RGATCY 1 cut(s) 935
MhlI GDGCHC 2 cut(s) 1279, 1590
MlsI TGGCCA 1 cut(s) 1461
MluNI TGGCCA 1 cut(s) 1461
MlyI GAGTC 1 cut(s) 1422
MmeI TCCRAC 1 cut(s) 1432
Mox20I TGGCCA 1 cut(s) 1461
Mph1103I ATGCAT 1 cut(s) 674
MroXI GAANNNNTTC 1 cut(s) 766
MscI TGGCCA 1 cut(s) 1461
MseI TTAA 5 cut(s) 84, 338, 363, 504, 1488
MslI CAYNNNNRTG 1 cut(s) 1131
Msp20I TGGCCA 1 cut(s) 1461
MspI CCGG 2 cut(s) 27, 897
MspR9I CCNGG 1 cut(s) 898
MvnI CGCG 1 cut(s) 1323
MwoI GCNNNNNNNGC 4 cut(s) 466, 798, 1007, 1253
NciI CCSGG 1 cut(s) 898
NdeII GATC 5 cut(s) 56, 67, 806, 935, 1402
NlaIII CATG 6 cut(s) 131, 198, 818, 871, 1014, 1247
NlaIV GGNNCC 2 cut(s) 1145, 1680
NsbI TGCGCA 1 cut(s) 126
NsiI ATGCAT 1 cut(s) 674
NspI RCATGY 3 cut(s) 198, 871, 1014
PaeI GCATGC 1 cut(s) 1014
PaeR7I CTCGAG 1 cut(s) 1226
PaqCI CACCTGC 1 cut(s) 770
PciI ACATGT 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 766
PfeI GAWTC 4 cut(s) 236, 319, 499, 1436
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 4 cut(s) 304, 468, 1016, 1031
PleI GAGTC 1 cut(s) 1422
PpsI GAGTC 1 cut(s) 1422
PscI ACATGT 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 1279
Psp1406I AACGTT 1 cut(s) 765
PspN4I GGNNCC 2 cut(s) 1145, 1680
PspPI GGNCC 2 cut(s) 477, 1678
PspXI VCTCGAGB 1 cut(s) 1226
PstNI CAGNNNCTG 2 cut(s) 45, 1358
PsuI RGATCY 1 cut(s) 935
RsaI GTAC 2 cut(s) 281, 825
RsaNI GTAC 2 cut(s) 280, 824
RseI CAYNNNNRTG 1 cut(s) 1131
SacI GAGCTC 1 cut(s) 1279
SaqAI TTAA 5 cut(s) 84, 338, 363, 504, 1488
SatI GCNGC 4 cut(s) 303, 467, 1015, 1030
Sau3AI GATC 5 cut(s) 56, 67, 806, 935, 1402
Sau96I GGNCC 2 cut(s) 477, 1678
SchI GAGTC 1 cut(s) 1422
ScrFI CCNGG 1 cut(s) 898
SduI GDGCHC 2 cut(s) 1279, 1590
SfaNI GCATC 6 cut(s) 423, 512, 659, 1310, 1492, 1573
SfcI CTRYAG 1 cut(s) 1624
Sfr274I CTCGAG 1 cut(s) 1226
SinI GGWCC 2 cut(s) 477, 1678
SlaI CTCGAG 1 cut(s) 1226
SmiMI CAYNNNNRTG 1 cut(s) 1131
SmlI CTYRAG 3 cut(s) 451, 540, 1226
SmoI CTYRAG 3 cut(s) 451, 540, 1226
SphI GCATGC 1 cut(s) 1014
SsiI CCGC 4 cut(s) 302, 567, 799, 1715
SspI AATATT 3 cut(s) 372, 509, 1492
SspMI CTAG 3 cut(s) 833, 1280, 1425
SstI GAGCTC 1 cut(s) 1279
StyD4I CCNGG 1 cut(s) 896
StyI CCWWGG 3 cut(s) 706, 954, 1594
TaaI ACNGT 3 cut(s) 47, 1506, 1645
TaiI ACGT 2 cut(s) 768, 825
TaqI TCGA 3 cut(s) 770, 1227, 1533
TaqII GACCGA 1 cut(s) 465
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 4 cut(s) 236, 319, 499, 1436
Tru1I TTAA 5 cut(s) 84, 338, 363, 504, 1488
Tru9I TTAA 5 cut(s) 84, 338, 363, 504, 1488
TscAI CASTG 5 cut(s) 487, 729, 934, 1204, 1438
TseI GCWGC 3 cut(s) 466, 1014, 1029
TspDTI ATGAA 9 cut(s) 414, 603, 629, 803, 910, 1218, 1232, 1361, 1619
TspGWI ACGGA 2 cut(s) 257, 1287
TspRI CASTG 5 cut(s) 487, 729, 934, 1204, 1438
VpaK11BI GGWCC 2 cut(s) 477, 1678
VspI ATTAAT 1 cut(s) 84
XapI RAATTY 5 cut(s) 94, 340, 1071, 1088, 1169
XbaI TCTAGA 1 cut(s) 832
XceI RCATGY 3 cut(s) 198, 871, 1014
XcmI CCANNNNNNNNNTGG 1 cut(s) 1469
XhoI CTCGAG 1 cut(s) 1226
XmiI GTMKAC 2 cut(s) 1318, 1545
XmnI GAANNNNTTC 1 cut(s) 766
XspI CTAG 3 cut(s) 833, 1280, 1425
Zsp2I ATGCAT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.