Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009166

Physical Location & Seq

Genomic Coordinates Reverse (-)

6866010 .. 6867902

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0085900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGGTGGAGCAAGGGTTTTATGGACGATGATGGCAACTGTAATAAGAGAAGAAAATTCACAGAAAGCCTGAATAGATCAACTAATCTGACAGAAAGGTATTATACCAATAAAGTAGAGACTGCTGAATGGGTTGATGGTAGGATCAGATTGCAGTGTACACTGTTTGAAGGTATTTCGCTGGTGAATTCCGAAGTAGCTTGTGTGAAATATGATATTAGGAAGCTTTGTTCAATGTTGCGGTGTTTGGAGCCCAACATAGAGAGTGTGAGAAAGAAAATCTGTGAAATTGAACAGTCCTTATCTGACATGAAGGTAGCGGAAAAGGTAGTAGAATTCAAGGACATAGATGGCCATAATTTGTGGACAGACATCACTAAGGAGAAAGAACCGAGAAAGTTATGTCCATGCACCCCAATAGCTACTGATGGCCTTCTGCACATGAAAATTTCTGACAAAGTTCCACACGAGAAGGTTGATCATATGACAGATGAGAAGGTGACAGAATCGGCCGACAAAAAACCTTTGACGGGCTTCAACGACTCAAAGGTTAAAAACAAAAACGACGACAGATTTCCGTCCAAACTCCTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004457 GO:0004458 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006089 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016898 GO:0019516 GO:0019752 GO:0022900 GO:0022904 GO:0032787 GO:0036094 GO:0043094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0047545 GO:0048037 GO:0050660 GO:0050662 GO:0051990 GO:0055114 GO:0071704 GO:0071949 GO:0097159 GO:1901265 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD-oxidase_C FAD_binding_4

Protein Analysis

198

Amino Acids

22.79

Weight (kDa)

7.53

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36400 AT4G36400
fragaria_vesca	FvH4_1g12310 FvH4_1g12310 FvH4_1g12310
malus_domestica	MD15G1251700.v1.1
prunus_persica	Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1 Prupe.7G162700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100131
rosa_laevigata	RLG00000016939
rosa_multiflora	Rmu_sc0018554.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142540
rosa_rugosa	Rorug02G0085900
rosa_samantha	Rh2AG134600 Rh2BG138300 Rh2CG140100 Rh2DG140300
rosa_wichuraiana	Rw2G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	241, 320
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	2 cut(s)	352, 510
AcsI	RAATTY	4 cut(s)	56, 187, 335, 447
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	5 cut(s)	170, 234, 293, 340, 538
AloI	GAACNNNNNNTCC	2 cut(s)	214, 246
AluBI	AGCT	3 cut(s)	200, 226, 422
AluI	AGCT	3 cut(s)	200, 226, 422
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	3 cut(s)	352, 430, 510
ApoI	RAATTY	4 cut(s)	56, 187, 335, 447
AspA2I	CCTAGG	1 cut(s)	589
AsuHPI	GGTGA	2 cut(s)	196, 511
AvrII	CCTAGG	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	467
BccI	CCATC	4 cut(s)	26, 131, 344, 422
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	590
BlnI	CCTAGG	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	589
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	589
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseX3I	CGGCCG	1 cut(s)	510
BsgI	GTGCAG	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	3 cut(s)	354, 432, 512
BsiEI	CGRYCG	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	3 cut(s)	354, 432, 512
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	77, 144, 478
BspACI	CCGC	2 cut(s)	241, 320
BspANI	GGCC	3 cut(s)	354, 432, 512
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	152
BsrGI	TGTACA	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	3 cut(s)	77, 144, 478
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	589
Bst2BI	CACGAG	1 cut(s)	467
Bst4CI	ACNGT	3 cut(s)	41, 165, 297
BstAUI	TGTACA	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	80, 147, 481
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	77, 144, 478
BstMCI	CGRYCG	1 cut(s)	513
BstZI	CGGCCG	1 cut(s)	510
BsuRI	GGCC	3 cut(s)	354, 432, 512
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	161, 161
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	3 cut(s)	310, 408, 442
CviJI	RGCY	9 cut(s)	69, 200, 226, 253, 354, 422, 432, 512, 534
CviKI_1	RGCY	9 cut(s)	69, 200, 226, 253, 354, 422, 432, 512, 534
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	3 cut(s)	79, 146, 480
DpnII	GATC	3 cut(s)	77, 144, 478
EaeI	YGGCCR	2 cut(s)	352, 510
EagI	CGGCCG	1 cut(s)	510
EclXI	CGGCCG	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	255
Eco52I	CGGCCG	1 cut(s)	510
EcoRI	GAATTC	2 cut(s)	187, 335
EcoT14I	CCWWGG	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	3 cut(s)	313, 411, 445
FatI	CATG	3 cut(s)	309, 407, 441
FauNDI	CATATG	1 cut(s)	483
FbaI	TGATCA	1 cut(s)	478
FriOI	GRGCYC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	590
HaeIII	GGCC	3 cut(s)	354, 432, 512
Hin1II	CATG	3 cut(s)	313, 411, 445
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	2 cut(s)	506, 542
HphI	GGTGA	2 cut(s)	196, 511
Hpy166II	GTNNAC	3 cut(s)	159, 161, 366
Hpy188I	TCNGA	5 cut(s)	90, 149, 193, 307, 454
Hpy8I	GTNNAC	3 cut(s)	159, 161, 366
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	5 cut(s)	164, 307, 443, 466, 490
HpyCH4III	ACNGT	3 cut(s)	41, 165, 297
HpyCH4V	TGCA	3 cut(s)	154, 411, 439
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	313, 411, 445
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	77, 144, 478
LmnI	GCTCC	2 cut(s)	9, 250
LpnPI	CCDG	2 cut(s)	83, 167
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	3 cut(s)	79, 146, 480
MboI	GATC	3 cut(s)	77, 144, 478
MboII	GAAGA	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	6 cut(s)	56, 187, 288, 335, 358, 447
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	536
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	354
NdeI	CATATG	1 cut(s)	483
NdeII	GATC	3 cut(s)	77, 144, 478
NlaIII	CATG	3 cut(s)	313, 411, 445
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	506
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
PspN4I	GGNNCC	1 cut(s)	252
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	552
Sau3AI	GATC	3 cut(s)	77, 144, 478
SchI	GAGTC	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	255
Sse9I	AATT	6 cut(s)	56, 187, 288, 335, 358, 447
SsiI	CCGC	2 cut(s)	241, 320
SspMI	CTAG	1 cut(s)	590
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	3 cut(s)	41, 165, 297
TasI	AATT	6 cut(s)	56, 187, 288, 335, 358, 447
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	2 cut(s)	161, 168
TseFI	GTSAC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	2 cut(s)	326, 458
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	2 cut(s)	161, 168
XapI	RAATTY	4 cut(s)	56, 187, 335, 447
XmaJI	CCTAGG	1 cut(s)	589
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.