FvH4_1g12310

D-2-hydroxyglutarate dehydrogenase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
6739733 .. 6744739
5007 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12310.t3

Sequence Viewer

Length: 1722 bp
ATGGAGAAGCTGAGAGCCACCGGTCGTCTTCTCAGATACTCACCTAAAGCTTCAATCTTTGATCGACGATTTTCTCCTAATTCCGGCAAGTCAATCCACAGCTCCGGTTCAGGTAATAGGCATGGATTAGGCAAGAAATGTGGTGATGAAATTAGCCGGAAATGGAATGTTAGGACGTGTTTTGGATTGTATGGAAGTCAGGGGAGAAATTTGCGAGATTGTACGGAGAGAGGTGTTGTTGAGGATTTGAGGAGGATTGAGCATCGAGGTTTTGGTTCGGTGGCGGAGAAGGTGCAGAGGAATGCTTCGTTTTCGACGTTGAATTCGGATGATATTAGCTATTTCAAGGGGGTATTAGGGGAGAAGAATGTGGTTGAGGATGAGGAGAGGTTAGCTATTGCGAATACGGATTGGATGCACAAGTATAGAGGCTCGAGTAAGCTTCTGCTGCAACCTCGGACCACTGAGGAGGTCTCGCAGATACTTAAGTACTGTGATTCAAGAAGCTTGGCTGTTGTTCCTCAAGGTGGAAATACTGGTCTTGTGGGCGGAAGCGTTCCTGTTTTTGATGAGGTGGTTATCAATATGAGTATGATGAATAAAGTCATATCTTTTGACAAGGTGAGTGGTATACTCGTATGCGAGGCAGGTTGCATATTGGAAAATATGATTACTTACTTGGACAACCAAGGATTTGTTATGCCACTGGACTTGGGTGCAAAAGGAAGCTGCCAGATTGGTGGAAATGTTTCAACCAATGCGGGTGGTTTGCGCCTTGTACGCTATGGATCACTTCATGGAACCGTACTTGGTCTGGAAGTTGTTTTGGCTAATGGTGATGTTCTTGACATGCTTGGGACTTTACGGAAAGATAATACTGGCTATGACCTGAAACATTTGTTCATAGGAAGTGAAGGATCTTTGGGAATTGTGACCAAGGTTTCCATACTTACCCCTCCAAAGTTATTTTCAGTGAATGTAGCTTTCCTTGCATGCCAAGACTACTTTAGCTGCCAGAAACTTCTAGTGGAAGCAAAGAGGAAACTTGGGGAGATTCTATCTGCTTTTGAATTCTTGGATAGCCATGCTCTGGATTTGGTTCTGAATCATTTGGATGGTGTTCGCAATCCATTACCTCCCACAATTCACAACTTTTATGTTTTGATTGAGACAACAGGCAGTGATGAAACTTTTGACAGAGAGAAGCTTGAAGCCTTTCTAGTTCACGCCATGGAAGGTGGTTTGATTTCTGATGGAGCTATAGCACAAGACATAAACCAAGCGTCAGCGTTCTGGTATATACGAGAGGGAATCCCTGAAGCATTGATGAAAGCAGGTGCTGTTTACAAATATGATTTATCACTACCTGTTGAGAAGATGTACGATCTTGTAGATGAAATGAGAACAAGACTTGGTGATTCAGCTAATGTGGTTGGATACGGCCATCTTGGGGATGGCAATTTGCATCTTAATGTTTCAACTCCACAGTATGATGATAAGACTTTGGCACAAATTGAACCCTTTGTCTACGAGTGGACATCTGGACATCGTGGAAGCATTAGTGCAGAGCATGGCCTTGGATTGATGAAAGCTAATAAGATTTTCTACAGCAAGCCAACTGCTACAGTGAAAGTGATGGCTTCCATCAAGAAGATGCTGGACCCAAAAGGAATACTCAACCCGTATAAAGTTCTGCCACACTCCATTGATTCTCACAGCTGA

Protein Analysis

574

Amino Acids

62.96

Weight (kDa)

6.77

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 148 - 283 1.4e-35 FAD binding domain
FAD-oxidase_C PF02913 325 - 472 2.8e-24 FAD linked oxidases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1325
Acc36I ACCTGC 2 cut(s) 638, 1325
AccB7I CCANNNNNTGG 1 cut(s) 1090
AccI GTMKAC 2 cut(s) 631, 1527
AciI CCGC 3 cut(s) 284, 549, 761
AclWI GGATC 2 cut(s) 796, 925
AcoI YGGCCR 1 cut(s) 1441
AcsI RAATTY 3 cut(s) 208, 322, 1070
AcuI CTGAAG 1 cut(s) 1338
AfaI GTAC 5 cut(s) 223, 491, 780, 807, 1382
AfiI CCNNNNNNNGG 4 cut(s) 83, 527, 1090, 1450
AflII CTTAAG 1 cut(s) 485
AflIII ACRYGT 1 cut(s) 176
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 9 cut(s) 54, 322, 346, 501, 753, 1070, 1211, 1479, 1517
AjiI CACGTC 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 952, 984
Alw26I GTCTC 2 cut(s) 478, 1163
AlwI GGATC 2 cut(s) 796, 925
AlwNI CAGNNNCTG 1 cut(s) 1340
Ama87I CYCGRG 1 cut(s) 433
AoxI GGCC 2 cut(s) 1441, 1573
ApeKI GCWGC 3 cut(s) 448, 729, 1011
ApoI RAATTY 3 cut(s) 208, 322, 1070
ArsI GACNNNNNNTTYG 2 cut(s) 307, 339
AsiGI ACCGGT 1 cut(s) 20
Asp700I GAANNNNTTC 2 cut(s) 748, 1215
AspLEI GCGC 1 cut(s) 774
AspS9I GGNCC 2 cut(s) 459, 1660
AsuHPI GGTGA 5 cut(s) 33, 155, 634, 848, 1427
AvaI CYCGRG 1 cut(s) 433
AvaII GGWCC 2 cut(s) 459, 1660
BaeI ACNNNNGTAYC 2 cut(s) 473, 506
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 435, 716, 998
BccI CCATC 6 cut(s) 1109, 1247, 1448, 1452, 1630, 1652
BceAI ACGGC 1 cut(s) 1456
BciVI GTATCC 1 cut(s) 1430
BcoDI GTCTC 2 cut(s) 478, 1163
BfaI CTAG 2 cut(s) 1025, 1220
BfmI CTRYAG 3 cut(s) 1260, 1606, 1623
BfrI CTTAAG 1 cut(s) 485
BfuAI ACCTGC 2 cut(s) 638, 1325
BfuI GTATCC 1 cut(s) 1430
BisI GCNGC 3 cut(s) 449, 730, 1012
BlsI GCNGC 3 cut(s) 450, 731, 1013
BmcAI AGTACT 1 cut(s) 491
Bme18I GGWCC 2 cut(s) 459, 1660
BmeT110I CYCGRG 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 459, 1660
BmiI GGNNCC 2 cut(s) 802, 1662
BmsI GCATC 4 cut(s) 271, 405, 1474, 1644
BpiI GAAGAC 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpuEI CTTGAG 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 478
BsaJI CCNNGG 5 cut(s) 455, 688, 936, 1230, 1576
BsaWI WCCGGW 2 cut(s) 20, 104
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 527, 1090, 1450
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 3 cut(s) 541, 711, 883
BseDI CCNNGG 5 cut(s) 455, 688, 936, 1230, 1576
BseGI GGATG 5 cut(s) 334, 385, 420, 1120, 1459
BseLI CCNNNNNNNGG 4 cut(s) 83, 527, 1090, 1450
BseMII CTCAG 2 cut(s) 46, 456
BseNI ACTGG 3 cut(s) 541, 711, 883
BseRI GAGGAG 3 cut(s) 265, 398, 482
BseXI GCAGC 3 cut(s) 435, 716, 998
BsgI GTGCAG 2 cut(s) 314, 1584
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 1443, 1575
BshTI ACCGGT 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 4 cut(s) 21, 84, 105, 157
BslFI GGGAC 1 cut(s) 871
BslI CCNNNNNNNGG 4 cut(s) 83, 527, 1090, 1450
BsmAI GTCTC 2 cut(s) 478, 1163
BsmFI GGGAC 1 cut(s) 871
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 2 cut(s) 1443, 1575
Bso31I GGTCTC 1 cut(s) 478
BsoBI CYCGRG 1 cut(s) 433
Bsp143I GATC 4 cut(s) 61, 788, 917, 1384
Bsp19I CCATGG 1 cut(s) 1230
BspACI CCGC 3 cut(s) 284, 549, 761
BspANI GGCC 2 cut(s) 1443, 1575
BspCNI CTCAG 2 cut(s) 45, 457
BspLI GGNNCC 2 cut(s) 802, 1662
BspMI ACCTGC 2 cut(s) 638, 1325
BspPI GGATC 2 cut(s) 796, 925
BspTI CTTAAG 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 478
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 3 cut(s) 541, 711, 883
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 5 cut(s) 455, 688, 936, 1230, 1576
BssMI GATC 4 cut(s) 61, 788, 917, 1384
BssNAI GTATAC 1 cut(s) 632
BssT1I CCWWGG 4 cut(s) 688, 936, 1230, 1576
Bst1107I GTATAC 1 cut(s) 632
Bst4CI ACNGT 4 cut(s) 494, 805, 1488, 1627
BstAFI CTTAAG 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 994, 1613
BstDEI CTNAG 3 cut(s) 11, 32, 465
BstDSI CCRYGG 1 cut(s) 1230
BstF5I GGATG 5 cut(s) 334, 385, 420, 1120, 1459
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 4 cut(s) 64, 791, 920, 1387
BstMAI GTCTC 2 cut(s) 478, 1163
BstMBI GATC 4 cut(s) 61, 788, 917, 1384
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 3 cut(s) 448, 780, 989
BstNSI RCATGY 2 cut(s) 853, 996
BstSFI CTRYAG 3 cut(s) 1260, 1606, 1623
BstV1I GCAGC 3 cut(s) 435, 716, 998
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 917
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 1 cut(s) 917
BstZ17I GTATAC 1 cut(s) 632
BsuI GTATCC 1 cut(s) 1430
BsuRI GGCC 2 cut(s) 1443, 1575
BtgI CCRYGG 1 cut(s) 1230
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 5 cut(s) 334, 385, 420, 1120, 1459
BtsI GCAGTG 1 cut(s) 1186
BtsIMutI CAGTG 5 cut(s) 462, 704, 978, 1186, 1632
BveI ACCTGC 2 cut(s) 638, 1325
Cac8I GCNNGC 2 cut(s) 994, 1613
CaiI CAGNNNCTG 1 cut(s) 1340
CfoI GCGC 1 cut(s) 774
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 459, 1660
CseI GACGC 1 cut(s) 1272
Csp6I GTAC 5 cut(s) 222, 490, 779, 806, 1381
CspAI ACCGGT 1 cut(s) 20
CspCI CAANNNNNGTGG 8 cut(s) 121, 156, 607, 642, 693, 728, 745, 780
CviAII CATG 7 cut(s) 122, 797, 850, 993, 1085, 1231, 1571
CviQI GTAC 5 cut(s) 222, 490, 779, 806, 1381
DdeI CTNAG 3 cut(s) 11, 32, 465
DpnI GATC 4 cut(s) 63, 790, 919, 1386
DpnII GATC 4 cut(s) 61, 788, 917, 1384
EaeI YGGCCR 1 cut(s) 1441
EciI GGCGGA 2 cut(s) 299, 564
Eco130I CCWWGG 4 cut(s) 688, 936, 1230, 1576
Eco31I GGTCTC 1 cut(s) 478
Eco47I GGWCC 2 cut(s) 459, 1660
Eco57I CTGAAG 1 cut(s) 1338
Eco88I CYCGRG 1 cut(s) 433
EcoRI GAATTC 2 cut(s) 322, 1070
EcoT14I CCWWGG 4 cut(s) 688, 936, 1230, 1576
ErhI CCWWGG 4 cut(s) 688, 936, 1230, 1576
FaeI CATG 7 cut(s) 125, 800, 853, 996, 1088, 1234, 1574
FaqI GGGAC 1 cut(s) 871
FatI CATG 7 cut(s) 121, 796, 849, 992, 1084, 1230, 1570
FauI CCCGC 1 cut(s) 754
FblI GTMKAC 2 cut(s) 631, 1527
Fnu4HI GCNGC 3 cut(s) 449, 730, 1012
FokI GGATG 5 cut(s) 341, 392, 427, 1127, 1466
Fsp4HI GCNGC 3 cut(s) 449, 730, 1012
FspBI CTAG 2 cut(s) 1025, 1220
GlaI GCGC 1 cut(s) 773
GluI GCNGC 3 cut(s) 449, 730, 1012
HaeIII GGCC 2 cut(s) 1443, 1575
HapII CCGG 4 cut(s) 21, 84, 105, 157
HgaI GACGC 1 cut(s) 1272
HhaI GCGC 1 cut(s) 774
Hin1II CATG 7 cut(s) 125, 800, 853, 996, 1088, 1234, 1574
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HindIII AAGCTT 4 cut(s) 48, 440, 505, 1205
HinfI GANTC 6 cut(s) 497, 1054, 1105, 1311, 1418, 1709
HpaII CCGG 4 cut(s) 21, 84, 105, 157
HphI GGTGA 5 cut(s) 33, 155, 634, 848, 1427
Hpy166II GTNNAC 5 cut(s) 632, 1225, 1345, 1528, 1536
Hpy188I TCNGA 5 cut(s) 35, 328, 459, 1104, 1252
Hpy188III TCNNGA 6 cut(s) 501, 815, 845, 1091, 1542, 1648
Hpy8I GTNNAC 5 cut(s) 632, 1225, 1345, 1528, 1536
Hpy99I CGWCG 2 cut(s) 69, 319
HpyAV CCTTC 3 cut(s) 283, 908, 1229
HpyCH4III ACNGT 4 cut(s) 494, 805, 1488, 1627
HpyCH4IV ACGT 2 cut(s) 176, 317
HpyCH4V TGCA 8 cut(s) 295, 418, 451, 654, 719, 992, 1465, 1565
HpyF10VI GCNNNNNNNGC 3 cut(s) 448, 780, 989
HpyF3I CTNAG 3 cut(s) 11, 32, 465
HpySE526I ACGT 2 cut(s) 176, 317
Hsp92II CATG 7 cut(s) 125, 800, 853, 996, 1088, 1234, 1574
HspAI GCGC 1 cut(s) 772
Kzo9I GATC 4 cut(s) 61, 788, 917, 1384
LmnI GCTCC 2 cut(s) 107, 1256
Lsp1109I GCAGC 3 cut(s) 435, 716, 998
LweI GCATC 4 cut(s) 271, 405, 1474, 1644
MaeI CTAG 2 cut(s) 1025, 1220
MaeII ACGT 2 cut(s) 176, 317
MaeIII GTNAC 1 cut(s) 931
MalI GATC 4 cut(s) 63, 790, 919, 1386
MboI GATC 4 cut(s) 61, 788, 917, 1384
MboII GAAGA 4 cut(s) 20, 376, 1387, 1663
MflI RGATCY 1 cut(s) 917
MluCI AATT 9 cut(s) 79, 150, 208, 322, 927, 1070, 1143, 1459, 1512
MmeI TCCRAC 1 cut(s) 1414
MroXI GAANNNNTTC 2 cut(s) 748, 1215
MseI TTAA 2 cut(s) 486, 1470
MslI CAYNNNNRTG 2 cut(s) 1113, 1470
MspA1I CMGCKG 1 cut(s) 1719
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 4 cut(s) 21, 84, 105, 157
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 3 cut(s) 448, 780, 989
NcoI CCATGG 1 cut(s) 1230
NdeII GATC 4 cut(s) 61, 788, 917, 1384
NlaIII CATG 7 cut(s) 125, 800, 853, 996, 1088, 1234, 1574
NlaIV GGNNCC 2 cut(s) 802, 1662
NmuCI GTSAC 1 cut(s) 931
NspI RCATGY 2 cut(s) 853, 996
PaeI GCATGC 1 cut(s) 996
PaeR7I CTCGAG 1 cut(s) 433
PaqCI CACCTGC 1 cut(s) 1325
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PctI GAATGC 1 cut(s) 307
PdmI GAANNNNTTC 2 cut(s) 748, 1215
PfeI GAWTC 6 cut(s) 497, 1054, 1105, 1311, 1418, 1709
PflMI CCANNNNNTGG 1 cut(s) 1090
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 3 cut(s) 450, 731, 1013
PspN4I GGNNCC 2 cut(s) 802, 1662
PspPI GGNCC 2 cut(s) 459, 1660
PspXI VCTCGAGB 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 1340
PsuI RGATCY 1 cut(s) 917
PvuII CAGCTG 1 cut(s) 1719
RsaI GTAC 5 cut(s) 223, 491, 780, 807, 1382
RsaNI GTAC 5 cut(s) 222, 490, 779, 806, 1381
RseI CAYNNNNRTG 2 cut(s) 1113, 1470
SaqAI TTAA 2 cut(s) 486, 1470
SatI GCNGC 3 cut(s) 449, 730, 1012
Sau3AI GATC 4 cut(s) 61, 788, 917, 1384
Sau96I GGNCC 2 cut(s) 459, 1660
ScaI AGTACT 1 cut(s) 491
SfaNI GCATC 4 cut(s) 271, 405, 1474, 1644
SfcI CTRYAG 3 cut(s) 1260, 1606, 1623
Sfr274I CTCGAG 1 cut(s) 433
SinI GGWCC 2 cut(s) 459, 1660
SlaI CTCGAG 1 cut(s) 433
SmiMI CAYNNNNRTG 2 cut(s) 1113, 1470
SmlI CTYRAG 3 cut(s) 433, 485, 522
SmoI CTYRAG 3 cut(s) 433, 485, 522
SphI GCATGC 1 cut(s) 996
Sse9I AATT 9 cut(s) 79, 150, 208, 322, 927, 1070, 1143, 1459, 1512
SsiI CCGC 3 cut(s) 284, 549, 761
SspMI CTAG 2 cut(s) 1025, 1220
StyI CCWWGG 4 cut(s) 688, 936, 1230, 1576
TaaI ACNGT 4 cut(s) 494, 805, 1488, 1627
TaiI ACGT 2 cut(s) 179, 320
TaqI TCGA 4 cut(s) 64, 265, 314, 434
TasI AATT 9 cut(s) 79, 150, 208, 322, 927, 1070, 1143, 1459, 1512
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 6 cut(s) 497, 1054, 1105, 1311, 1418, 1709
Tru1I TTAA 2 cut(s) 486, 1470
Tru9I TTAA 2 cut(s) 486, 1470
TscAI CASTG 5 cut(s) 469, 711, 978, 1186, 1632
TseFI GTSAC 1 cut(s) 931
TseI GCWGC 3 cut(s) 448, 729, 1011
Tsp45I GTSAC 1 cut(s) 931
TspDTI ATGAA 8 cut(s) 162, 611, 785, 892, 1200, 1343, 1410, 1601
TspGWI ACGGA 3 cut(s) 239, 422, 880
TspRI CASTG 5 cut(s) 469, 711, 978, 1186, 1632
Van91I CCANNNNNTGG 1 cut(s) 1090
Vha464I CTTAAG 1 cut(s) 485
VpaK11BI GGWCC 2 cut(s) 459, 1660
XapI RAATTY 3 cut(s) 208, 322, 1070
XceI RCATGY 2 cut(s) 853, 996
XcmI CCANNNNNNNNNTGG 1 cut(s) 1451
XhoI CTCGAG 1 cut(s) 433
XmiI GTMKAC 2 cut(s) 631, 1527
XmnI GAANNNNTTC 2 cut(s) 748, 1215
XspI CTAG 2 cut(s) 1025, 1220
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.