Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005012

Physical Location & Seq

Genomic Coordinates Reverse (-)

17353291 .. 17356037

Gene Structure 2747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36850.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGTGTCTTTAGGTTACTGCTTGAAGGAGAAGAAGACATGCGTGAGATGGGTAGAGATATACTTCGATGACTGTCTCTGTAACTTAAACGACGACGTTTCATTCGCACTTGGAATCGCTAGCCTCCTCTGTTGGGGAGTCGCAGAGATTCCTCAGGTCATCACTAACTTCCGTACAAAGTCAAGTAACGGTGTCTCTCTCTCCTTCCTCCTCGCTTGGGTCGCCGGTGATATCTTCAATCTCGTCGGTTGTCTTCTTGAACCAGCTACTTTGCCGACTCAGTTCTACACAGCCTTGCTTTACACAGTGAGCACTGTAGTATTGGTGATCCAGACTATTTACTACGATTACATCTACAAACTTTGTAGACATAGACGTACCAAGATTTGTCAAAAGGATGAGGAAGATGAAGAGAAGAGACCATTGAAACCACCAAAGACGATGGGATCTGCTATTTCCATCCCAGGAGGATCTTACAAAGATTCTTCTCGGAGAGAGTTCTATTACACGTCGGCGAGATCGTTGGCCGGAAGTGGCACACCTCCCTTAAGAACATCGTATTTTCGAGTGGCTAAGAGTGGCCCTTCGGCTCTGGCAATCGACAATGATGGTTCGTCATCGGACGAAGATGAGACAATGTCGACGTGTCCTGTCATAACGGCTAAAACCATTACAAAACCAAGGCCAATACCTAGACAGGCAGGTTTTGGAACGTTTTTGGCTGCATCGGCTAGTCTTCCGCTTCAGGCAAAGAGCTTAGCGGAAAAATATGCACATGCTTCAAGCAGACGGCTTCTAAACGAAAGAATAGTAGAGCATAGCGCGTTGGGACAATGGTTGGGATGGCTAATGGCCGCCATTTACATGGGCGGTCGCATTCCTCAGATTTGGCTCAACATCAAAAGAGGAAGCGTCGAGGGTTTGAATCCACTGATGTTCATCTTCGCGCTAGTAGCCAATGCAACATATGTTGGTAGTATTCTTGTCCGAACAACTGAATGGGACAACATCAAACCAAACCTTCCTTGGTTGCTTGATGCTATTGTCTGCGTCGTACTAGATCTATTTATAATACTGCAGTATATCTACTACAAGTATTGCAGGATAAAGAGCTTGGAAAGCAGAGAAGAAGACGCCTATGGAGACTATGTGGAAGCAAGCAAAACTTTTGTTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

392

Amino Acids

43.82

Weight (kDa)

8.37

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	33 - 89	7.4e-19	PQ loop repeat
PQ-loop	PF04193	276 - 306	2.4e-07	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36850 AT4G36850 AT4G36850 AT4G36850
fragaria_vesca	FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140
malus_domestica	MD15G1270100.v1.1
prunus_persica	Prupe.7G147900_v2.0.a1
pyrus_communis	pycom02g12320 pycom15g23430
rosa_chinensis	RchiOBHm_Chr2g0102821
rosa_laevigata	RLG00000017181
rosa_multiflora	Rmu_sc0006537.1_g000015
rosa_roxburghii	Rroxscaffold_2G00140300
rosa_rugosa	Rorug02G0109600 Rorug02G0109700 Rorug02G0109700 Rorug02G0109800
rosa_samantha	Rh2AG158100 Rh2BG164600 Rh2CG164300 Rh2DG163400 Rh4DG034700
rosa_wichuraiana	Rw2G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1070
Acc36I	ACCTGC	1 cut(s)	692
AccI	GTMKAC	2 cut(s)	367, 641
AccII	CGCG	2 cut(s)	824, 947
AciI	CCGC	4 cut(s)	740, 761, 855, 870
AclI	AACGTT	1 cut(s)	713
AclWI	GGATC	3 cut(s)	322, 454, 478
AcoI	YGGCCR	2 cut(s)	525, 852
AcuI	CTGAAG	1 cut(s)	728
AcyI	GRCGYC	1 cut(s)	1134
AfaI	GTAC	3 cut(s)	175, 379, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	133, 217
AflII	CTTAAG	1 cut(s)	547
AflIII	ACRYGT	2 cut(s)	507, 644
AgsI	TTSAA	6 cut(s)	25, 238, 260, 427, 783, 925
AjiI	CACGTC	2 cut(s)	510, 645
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	3 cut(s)	266, 756, 1113
AluI	AGCT	3 cut(s)	266, 756, 1113
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	5 cut(s)	80, 199, 412, 626, 1137
AlwI	GGATC	3 cut(s)	322, 454, 478
AoxI	GGCC	4 cut(s)	525, 580, 683, 852
ApeKI	GCWGC	1 cut(s)	722
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	2 cut(s)	824, 949
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	239, 337
AsuNHI	GCTAGC	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	153
BbsI	GAAGAC	4 cut(s)	41, 245, 728, 1137
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	5 cut(s)	42, 436, 467, 602, 837
BceAI	ACGGC	2 cut(s)	675, 806
BciT130I	CCWGG	1 cut(s)	465
BcoDI	GTCTC	5 cut(s)	80, 199, 412, 626, 1137
BfaI	CTAG	5 cut(s)	120, 693, 732, 950, 1058
BfmI	CTRYAG	2 cut(s)	315, 1076
BfrI	CTTAAG	1 cut(s)	547
BfuAI	ACCTGC	1 cut(s)	692
BglII	AGATCT	1 cut(s)	1060
BisI	GCNGC	2 cut(s)	723, 855
BlpI	GCTNAGC	1 cut(s)	757
BlsI	GCNGC	2 cut(s)	724, 856
Bme1390I	CCNGG	1 cut(s)	465
BmgBI	CACGTC	2 cut(s)	510, 645
BmgT120I	GGNCC	1 cut(s)	581
BmrFI	CCNGG	1 cut(s)	465
BmsI	GCATC	2 cut(s)	734, 1027
BmtI	GCTAGC	1 cut(s)	123
BpiI	GAAGAC	4 cut(s)	41, 245, 728, 1137
Bpu1102I	GCTNAGC	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	938
BsaHI	GRCGYC	1 cut(s)	1134
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	463, 680, 1025
BsaXI	ACNNNNNCTCC	2 cut(s)	1134, 1164
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 217
Bse118I	RCCGGY	1 cut(s)	224
Bse21I	CCTNAGG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	938
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	463, 680, 1025
BseGI	GGATG	3 cut(s)	403, 459, 848
BseJI	GATNNNNATC	1 cut(s)	938
BseLI	CCNNNNNNNGG	2 cut(s)	133, 217
BseMII	CTCAG	3 cut(s)	167, 293, 896
BseRI	GAGGAG	2 cut(s)	116, 200
BseXI	GCAGC	1 cut(s)	709
Bsh1236I	CGCG	2 cut(s)	824, 947
Bsh1285I	CGRYCG	1 cut(s)	874
BshFI	GGCC	4 cut(s)	527, 582, 685, 854
BsiEI	CGRYCG	1 cut(s)	874
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	225, 528
BslFI	GGGAC	2 cut(s)	843, 1016
BslI	CCNNNNNNNGG	2 cut(s)	133, 217
BsmAI	GTCTC	5 cut(s)	80, 199, 412, 626, 1137
BsmFI	GGGAC	2 cut(s)	843, 1016
BsmI	GAATGC	1 cut(s)	876
BsnI	GGCC	4 cut(s)	527, 582, 685, 854
Bso31I	GGTCTC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	5 cut(s)	327, 446, 470, 518, 1060
Bsp1720I	GCTNAGC	1 cut(s)	757
BspACI	CCGC	4 cut(s)	740, 761, 855, 870
BspANI	GGCC	4 cut(s)	527, 582, 685, 854
BspCNI	CTCAG	3 cut(s)	166, 292, 895
BspFNI	CGCG	2 cut(s)	824, 947
BspMAI	CTGCAG	1 cut(s)	1080
BspMI	ACCTGC	1 cut(s)	692
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	3 cut(s)	322, 454, 478
BspTI	CTTAAG	1 cut(s)	547
BspTNI	GGTCTC	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	3 cut(s)	463, 680, 1025
BssMI	GATC	5 cut(s)	327, 446, 470, 518, 1060
BssNI	GRCGYC	1 cut(s)	1134
BssT1I	CCWWGG	2 cut(s)	680, 1025
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	4 cut(s)	74, 191, 307, 316
Bst6I	CTCTTC	2 cut(s)	405, 410
BstACI	GRCGYC	1 cut(s)	1134
BstAFI	CTTAAG	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	121, 1159
BstDEI	CTNAG	5 cut(s)	153, 279, 573, 757, 882
BstF5I	GGATG	3 cut(s)	403, 459, 848
BstFNI	CGCG	2 cut(s)	824, 947
BstHHI	GCGC	2 cut(s)	824, 949
BstKTI	GATC	5 cut(s)	330, 449, 473, 521, 1063
BstMAI	GTCTC	5 cut(s)	80, 199, 412, 626, 1137
BstMBI	GATC	5 cut(s)	327, 446, 470, 518, 1060
BstMCI	CGRYCG	1 cut(s)	874
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 728, 953, 1119
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	2 cut(s)	42, 779
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	2 cut(s)	315, 1076
BstUI	CGCG	2 cut(s)	824, 947
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	4 cut(s)	41, 245, 728, 1137
BstX2I	RGATCY	3 cut(s)	446, 470, 1060
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	3 cut(s)	446, 470, 1060
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	4 cut(s)	527, 582, 685, 854
BtrI	CACGTC	2 cut(s)	510, 645
BtsCI	GGATG	3 cut(s)	403, 459, 848
BtsIMutI	CAGTG	3 cut(s)	312, 312, 929
BveI	ACCTGC	1 cut(s)	692
Cac8I	GCNNGC	2 cut(s)	121, 1159
CfoI	GCGC	2 cut(s)	824, 949
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	581
CseI	GACGC	3 cut(s)	901, 1039, 1142
Csp6I	GTAC	3 cut(s)	174, 378, 1055
CviAII	CATG	3 cut(s)	39, 776, 865
CviQI	GTAC	3 cut(s)	174, 378, 1055
DdeI	CTNAG	5 cut(s)	153, 279, 573, 757, 882
DpnI	GATC	5 cut(s)	329, 448, 472, 520, 1062
DpnII	GATC	5 cut(s)	327, 446, 470, 518, 1060
EaeI	YGGCCR	2 cut(s)	525, 852
Eam1104I	CTCTTC	2 cut(s)	405, 410
EarI	CTCTTC	2 cut(s)	405, 410
Eco130I	CCWWGG	2 cut(s)	680, 1025
Eco31I	GGTCTC	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	728
Eco81I	CCTNAGG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	680, 1025
ErhI	CCWWGG	2 cut(s)	680, 1025
FaeI	CATG	3 cut(s)	42, 779, 868
FalI	AAGNNNNNCTT	1 cut(s)	1150
FaqI	GGGAC	2 cut(s)	843, 1016
FatI	CATG	3 cut(s)	38, 775, 864
FauNDI	CATATG	1 cut(s)	967
FblI	GTMKAC	2 cut(s)	367, 641
Fnu4HI	GCNGC	2 cut(s)	723, 855
FokI	GGATG	3 cut(s)	410, 446, 855
Fsp4HI	GCNGC	2 cut(s)	723, 855
FspBI	CTAG	5 cut(s)	120, 693, 732, 950, 1058
GlaI	GCGC	2 cut(s)	823, 948
GluI	GCNGC	2 cut(s)	723, 855
HaeIII	GGCC	4 cut(s)	527, 582, 685, 854
HapII	CCGG	2 cut(s)	225, 528
HgaI	GACGC	3 cut(s)	901, 1039, 1142
HhaI	GCGC	2 cut(s)	824, 949
Hin1I	GRCGYC	1 cut(s)	1134
Hin1II	CATG	3 cut(s)	42, 779, 868
Hin6I	GCGC	2 cut(s)	822, 947
HinP1I	GCGC	2 cut(s)	822, 947
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	6 cut(s)	114, 138, 148, 277, 482, 925
HpaII	CCGG	2 cut(s)	225, 528
HphI	GGTGA	2 cut(s)	239, 337
Hpy166II	GTNNAC	2 cut(s)	368, 642
Hpy188I	TCNGA	4 cut(s)	492, 622, 885, 989
Hpy188III	TCNNGA	3 cut(s)	257, 331, 1176
Hpy8I	GTNNAC	2 cut(s)	368, 642
Hpy99I	CGWCG	7 cut(s)	95, 98, 248, 514, 646, 917, 1055
HpyAV	CCTTC	4 cut(s)	19, 214, 594, 1031
HpyCH4III	ACNGT	4 cut(s)	74, 191, 307, 316
HpyCH4IV	ACGT	5 cut(s)	96, 376, 509, 644, 713
HpyCH4V	TGCA	5 cut(s)	725, 773, 962, 1078, 1101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 728, 953, 1119
HpyF3I	CTNAG	5 cut(s)	153, 279, 573, 757, 882
HpySE526I	ACGT	5 cut(s)	96, 376, 509, 644, 713
Hsp92I	GRCGYC	1 cut(s)	1134
Hsp92II	CATG	3 cut(s)	42, 779, 868
HspAI	GCGC	2 cut(s)	822, 947
Kzo9I	GATC	5 cut(s)	327, 446, 470, 518, 1060
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	2 cut(s)	734, 1027
MaeI	CTAG	5 cut(s)	120, 693, 732, 950, 1058
MaeII	ACGT	5 cut(s)	96, 376, 509, 644, 713
MaeIII	GTNAC	3 cut(s)	14, 80, 185
MalI	GATC	5 cut(s)	329, 448, 472, 520, 1062
MboI	GATC	5 cut(s)	327, 446, 470, 518, 1060
MflI	RGATCY	3 cut(s)	446, 470, 1060
MhlI	GDGCHC	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	147, 271
MseI	TTAA	2 cut(s)	86, 548
MslI	CAYNNNNRTG	1 cut(s)	863
MspCI	CTTAAG	1 cut(s)	547
MspI	CCGG	2 cut(s)	225, 528
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	876
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	2 cut(s)	824, 947
MwoI	GCNNNNNNNGC	4 cut(s)	221, 728, 953, 1119
NdeI	CATATG	1 cut(s)	967
NdeII	GATC	5 cut(s)	327, 446, 470, 518, 1060
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	3 cut(s)	42, 779, 868
NspI	RCATGY	2 cut(s)	42, 779
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PctI	GAATGC	1 cut(s)	876
PfeI	GAWTC	4 cut(s)	114, 148, 482, 925
PflFI	GACNNNGTC	1 cut(s)	637
PkrI	GCNGC	2 cut(s)	724, 856
PleI	GAGTC	2 cut(s)	146, 271
PpsI	GAGTC	2 cut(s)	146, 271
PsiI	TTATAA	1 cut(s)	1070
Psp1406I	AACGTT	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	1080
PsuI	RGATCY	3 cut(s)	446, 470, 1060
PsyI	GACNNNGTC	1 cut(s)	637
RsaI	GTAC	3 cut(s)	175, 379, 1056
RsaNI	GTAC	3 cut(s)	174, 378, 1055
RseI	CAYNNNNRTG	1 cut(s)	863
SalI	GTCGAC	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	86, 548
SatI	GCNGC	2 cut(s)	723, 855
Sau3AI	GATC	5 cut(s)	327, 446, 470, 518, 1060
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	2 cut(s)	147, 271
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	2 cut(s)	734, 1027
SfcI	CTRYAG	2 cut(s)	315, 1076
SgrAI	CRCCGGYG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
SsiI	CCGC	4 cut(s)	740, 761, 855, 870
SspMI	CTAG	5 cut(s)	120, 693, 732, 950, 1058
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	2 cut(s)	680, 1025
TaaI	ACNGT	4 cut(s)	74, 191, 307, 316
TaiI	ACGT	5 cut(s)	99, 379, 512, 647, 716
TaqI	TCGA	5 cut(s)	66, 565, 600, 641, 915
TauI	GCSGC	1 cut(s)	857
TfiI	GAWTC	4 cut(s)	114, 148, 482, 925
Tru1I	TTAA	2 cut(s)	86, 548
Tru9I	TTAA	2 cut(s)	86, 548
TscAI	CASTG	3 cut(s)	312, 319, 936
TseI	GCWGC	1 cut(s)	722
TspDTI	ATGAA	3 cut(s)	90, 423, 928
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	3 cut(s)	312, 319, 936
Tth111I	GACNNNGTC	1 cut(s)	637
Vha464I	CTTAAG	1 cut(s)	547
XceI	RCATGY	2 cut(s)	42, 779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1023
XmiI	GTMKAC	2 cut(s)	367, 641
XspI	CTAG	5 cut(s)	120, 693, 732, 950, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.