Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005012

Physical Location & Seq

Genomic Coordinates Reverse (-)

23404099 .. 23409680

Gene Structure 5582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1270100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCCTCTCTCTTATTGTGTGGCGGAGAACAAACCATGCTCGCGTTGGATTCAGAAGTATTTCAAGGACTGCCTTTGCAATCTCAACGATGACATCTCGTTTGTTTTTGGTCTGATAAGCTTGGTGTGTTGGGGGGTGGCTGAAGTTCCTCAAATCATCACAAACTTTCACACCAAGTCCAGCCACGGAGTCTCCCTCGCCTTCCTTTGCACTTGGGTCGCCGGGGATGTGTTTAATTTATTGGGTTGTTTTCTGGAACCAGCAACGTTGCCGACCCAGTTGTACACAGCTCTGCTCTACACAGCAAGTACTGTAGTATTAGTATTGCAAAGTGTGTACTATGACTACATCTATACATGGTGGAAATGCCGAAATATCACAGCAAGACAGAAGGATGAAGAAGAGAATAAAAAACCATTGAATCCAAAGTTGGCTGATTCAGGCATTCCAATACCAAGTGTTTCACCCAAAGCCACTCCTAAAAGGGAGTTCTACTATACGTCAGCGAGATCTTTGGCTGGCAGTGGCACTCCGCCGTTTCGAACGTATATGAGGGCAGCTAGAAGTGGCCCTTCTGCAATGACAATAGACAGTGACTCATCTTCTGAGGATGAGTCAGCTCCAGTTACATCCAACAAGAACTCTGTTACCCAGCCTAGGCCAATCCCAAGATTGGCAGGGTACGGAACATTTCTAGCAACATCGCTTAACTTGCCTTCACAAACAAAGGGTTTGGCACAAGTATACCTGGGAGTAACTGGGAGGAAACTCTTGCAGGAACACTCAGTTGAGCATAGTACCTTTGGTCAAGGGCTGGGCTGGCTAATGGCTGCTATATACATGGGCGGTCGACTCCCTCAGATTTGGTTAAATATTAAAAGAGGAAGTGTGGAGGGATTGAATCCTCTAATGTTCGTCTTTGCACTGATCGCAAATGTCACTTATGTGGGAAGCATACTTGTAAGAAGTACCAAGTGGGACAGCATTCAGGCCAACATGCCATGGTTGCTCGATGCTGCAGTTTGTGTGGCACTTGACTTATTTATAATTTTGCAGTACATATACTATAAACACTGGAGGAAAGGGACTACAAGAGGTGAAGAAGACTACACGTACTATAAGGAAGCAAATCATGCTGCAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

383

Amino Acids

42.59

Weight (kDa)

8.71

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	32 - 88	2.5e-18	PQ loop repeat
PQ-loop	PF04193	269 - 326	3.5e-16	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36850 AT4G36850 AT4G36850 AT4G36850
fragaria_vesca	FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140 FvH4_1g14140
malus_domestica	MD15G1270100.v1.1
prunus_persica	Prupe.7G147900_v2.0.a1
pyrus_communis	pycom02g12320 pycom15g23430
rosa_chinensis	RchiOBHm_Chr2g0102821
rosa_laevigata	RLG00000017181
rosa_multiflora	Rmu_sc0006537.1_g000015
rosa_roxburghii	Rroxscaffold_2G00140300
rosa_rugosa	Rorug02G0109600 Rorug02G0109700 Rorug02G0109700 Rorug02G0109800
rosa_samantha	Rh2AG158100 Rh2BG164600 Rh2CG164300 Rh2DG163400 Rh4DG034700
rosa_wichuraiana	Rw2G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1046
AccI	GTMKAC	2 cut(s)	744, 850
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	23, 533, 846
AclI	AACGTT	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	8 cut(s)	284, 310, 338, 683, 799, 970, 1058, 1115
AfiI	CCNNNNNNNGG	2 cut(s)	657, 673
AflIII	ACRYGT	1 cut(s)	1110
AgsI	TTSAA	3 cut(s)	64, 421, 901
AjnI	CCWGG	1 cut(s)	747
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AleI	CACNNNNGTG	1 cut(s)	944
AluBI	AGCT	5 cut(s)	120, 290, 560, 620, 1142
AluI	AGCT	5 cut(s)	120, 290, 560, 620, 1142
Alw26I	GTCTC	1 cut(s)	196
AoxI	GGCC	3 cut(s)	568, 659, 990
ApeKI	GCWGC	5 cut(s)	557, 830, 1016, 1136, 1139
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
Asp700I	GAANNNNTTC	1 cut(s)	59
AspA2I	CCTAGG	1 cut(s)	656
AspS9I	GGNCC	1 cut(s)	569
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	456, 1109
AsuII	TTCGAA	1 cut(s)	541
AvrII	CCTAGG	1 cut(s)	656
BbsI	GAAGAC	1 cut(s)	1110
BbvI	GCAGC	4 cut(s)	569, 817, 1003, 1123
BceAI	ACGGC	1 cut(s)	520
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	1 cut(s)	749
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	3 cut(s)	561, 657, 695
BfmI	CTRYAG	3 cut(s)	312, 1017, 1137
BglII	AGATCT	1 cut(s)	509
BisI	GCNGC	5 cut(s)	558, 831, 1017, 1137, 1140
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	5 cut(s)	559, 832, 1018, 1138, 1141
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	223, 749
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	223, 749
BmrI	ACTGGG	2 cut(s)	271, 768
BmsI	GCATC	1 cut(s)	1003
BmuI	ACTGGG	2 cut(s)	271, 768
BpiI	GAAGAC	1 cut(s)	1110
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
BpmI	CTGGAG	2 cut(s)	606, 1096
Bpu14I	TTCGAA	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	1113
BsaJI	CCNNGG	5 cut(s)	184, 222, 656, 748, 1001
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	657, 673
Bse1I	ACTGG	4 cut(s)	277, 623, 763, 1079
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	749
BseDI	CCNNGG	5 cut(s)	184, 222, 656, 748, 1001
BseGI	GGATG	4 cut(s)	232, 400, 616, 629
BseLI	CCNNNNNNNGG	2 cut(s)	657, 673
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	3 cut(s)	597, 798, 872
BseNI	ACTGG	4 cut(s)	277, 623, 763, 1079
BseXI	GCAGC	4 cut(s)	569, 817, 1003, 1123
BseYI	CCCAGC	2 cut(s)	651, 814
Bsh1236I	CGCG	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	850
BshFI	GGCC	3 cut(s)	570, 661, 992
BsiEI	CGRYCG	1 cut(s)	850
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	2 cut(s)	992, 1099
BslI	CCNNNNNNNGG	2 cut(s)	657, 673
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	992, 1099
BsmI	GAATGC	2 cut(s)	444, 984
BsnI	GGCC	3 cut(s)	570, 661, 992
Bsp119I	TTCGAA	1 cut(s)	541
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	509, 927
Bsp19I	CCATGG	1 cut(s)	1001
BspACI	CCGC	3 cut(s)	23, 533, 846
BspANI	GGCC	3 cut(s)	570, 661, 992
BspCNI	CTCAG	3 cut(s)	598, 797, 871
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	258
BspMAI	CTGCAG	2 cut(s)	1021, 1141
BspT104I	TTCGAA	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	4 cut(s)	277, 623, 763, 1079
BssECI	CCNNGG	5 cut(s)	184, 222, 656, 748, 1001
BssMI	GATC	2 cut(s)	509, 927
BssNAI	GTATAC	1 cut(s)	745
BssT1I	CCWWGG	2 cut(s)	656, 1001
Bst1107I	GTATAC	1 cut(s)	745
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	2 cut(s)	313, 593
Bst6I	CTCTTC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	1133
BstAUI	TGTACA	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	1113
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	3 cut(s)	41, 520, 821
BstDEI	CTNAG	3 cut(s)	606, 784, 858
BstDSI	CCRYGG	2 cut(s)	184, 1001
BstF5I	GGATG	4 cut(s)	232, 400, 616, 629
BstFNI	CGCG	1 cut(s)	43
BstKTI	GATC	2 cut(s)	512, 930
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	509, 927
BstMCI	CGRYCG	1 cut(s)	850
BstMWI	GCNNNNNNNGC	5 cut(s)	712, 820, 929, 1006, 1133
BstNI	CCWGG	1 cut(s)	749
BstNSI	RCATGY	1 cut(s)	1000
BstSCI	CCNGG	2 cut(s)	221, 747
BstSFI	CTRYAG	3 cut(s)	312, 1017, 1137
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	4 cut(s)	569, 817, 1003, 1123
BstV2I	GAAGAC	1 cut(s)	1110
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BstZ17I	GTATAC	1 cut(s)	745
BsuRI	GGCC	3 cut(s)	570, 661, 992
BtgI	CCRYGG	2 cut(s)	184, 1001
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	4 cut(s)	232, 400, 616, 629
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	4 cut(s)	529, 598, 923, 1072
Cac8I	GCNNGC	3 cut(s)	41, 520, 821
Cfr13I	GGNCC	1 cut(s)	569
Csp6I	GTAC	8 cut(s)	283, 309, 337, 682, 798, 969, 1057, 1114
CviAII	CATG	6 cut(s)	36, 357, 841, 997, 1002, 1133
CviQI	GTAC	8 cut(s)	283, 309, 337, 682, 798, 969, 1057, 1114
DdeI	CTNAG	3 cut(s)	606, 784, 858
DpnI	GATC	2 cut(s)	511, 929
DpnII	GATC	2 cut(s)	509, 927
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EciI	GGCGGA	2 cut(s)	38, 522
Eco130I	CCWWGG	2 cut(s)	656, 1001
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	747
EcoT14I	CCWWGG	2 cut(s)	656, 1001
ErhI	CCWWGG	2 cut(s)	656, 1001
FaeI	CATG	6 cut(s)	39, 360, 844, 1000, 1005, 1136
FalI	AAGNNNNNCTT	2 cut(s)	556, 588
FaqI	GGGAC	2 cut(s)	992, 1099
FatI	CATG	6 cut(s)	35, 356, 840, 996, 1001, 1132
FblI	GTMKAC	2 cut(s)	744, 850
Fnu4HI	GCNGC	5 cut(s)	558, 831, 1017, 1137, 1140
FokI	GGATG	4 cut(s)	239, 407, 616, 623
Fsp4HI	GCNGC	5 cut(s)	558, 831, 1017, 1137, 1140
FspBI	CTAG	3 cut(s)	561, 657, 695
GluI	GCNGC	5 cut(s)	558, 831, 1017, 1137, 1140
GsaI	CCCAGC	2 cut(s)	655, 818
GsuI	CTGGAG	2 cut(s)	606, 1096
HaeIII	GGCC	3 cut(s)	570, 661, 992
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	6 cut(s)	39, 360, 844, 1000, 1005, 1136
HincII	GTYRAC	1 cut(s)	851
HindII	GTYRAC	1 cut(s)	851
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	8 cut(s)	49, 189, 421, 437, 596, 614, 852, 901
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	456, 1109
Hpy166II	GTNNAC	4 cut(s)	285, 337, 745, 851
Hpy188I	TCNGA	4 cut(s)	54, 114, 607, 861
Hpy188III	TCNNGA	2 cut(s)	254, 1146
Hpy8I	GTNNAC	4 cut(s)	285, 337, 745, 851
HpyAV	CCTTC	4 cut(s)	211, 385, 582, 726
HpyCH4III	ACNGT	2 cut(s)	313, 593
HpyCH4IV	ACGT	4 cut(s)	266, 500, 545, 1112
HpyCH4V	TGCA	9 cut(s)	78, 210, 328, 578, 775, 923, 1019, 1054, 1139
HpyF10VI	GCNNNNNNNGC	5 cut(s)	712, 820, 929, 1006, 1133
HpyF3I	CTNAG	3 cut(s)	606, 784, 858
HpySE526I	ACGT	4 cut(s)	266, 500, 545, 1112
Hsp92II	CATG	6 cut(s)	39, 360, 844, 1000, 1005, 1136
Kzo9I	GATC	2 cut(s)	509, 927
LmnI	GCTCC	1 cut(s)	625
Lsp1109I	GCAGC	4 cut(s)	569, 817, 1003, 1123
LweI	GCATC	1 cut(s)	1003
MaeI	CTAG	3 cut(s)	561, 657, 695
MaeII	ACGT	4 cut(s)	266, 500, 545, 1112
MaeIII	GTNAC	5 cut(s)	593, 625, 646, 754, 937
MalI	GATC	2 cut(s)	511, 929
MboI	GATC	2 cut(s)	509, 927
MboII	GAAGA	5 cut(s)	410, 413, 594, 1112, 1115
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	2 cut(s)	235, 1047
MlyI	GAGTC	4 cut(s)	198, 590, 623, 846
MmeI	TCCRAC	2 cut(s)	26, 657
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	4 cut(s)	234, 708, 869, 876
MslI	CAYNNNNRTG	1 cut(s)	944
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	223, 749
Mva1269I	GAATGC	2 cut(s)	444, 984
MvaI	CCWGG	1 cut(s)	749
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	5 cut(s)	712, 820, 929, 1006, 1133
NciI	CCSGG	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	1001
NdeII	GATC	2 cut(s)	509, 927
NlaIII	CATG	6 cut(s)	39, 360, 844, 1000, 1005, 1136
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	593, 937
NspI	RCATGY	1 cut(s)	1000
NspV	TTCGAA	1 cut(s)	541
OliI	CACNNNNGTG	1 cut(s)	944
PctI	GAATGC	2 cut(s)	444, 984
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	4 cut(s)	49, 421, 437, 901
PkrI	GCNGC	5 cut(s)	559, 832, 1018, 1138, 1141
PleI	GAGTC	4 cut(s)	197, 590, 622, 846
PpsI	GAGTC	4 cut(s)	197, 590, 622, 846
Ppu21I	YACGTR	1 cut(s)	1113
PsiI	TTATAA	1 cut(s)	1046
Psp1406I	AACGTT	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	747
PspFI	CCCAGC	2 cut(s)	651, 814
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	569
PstI	CTGCAG	2 cut(s)	1021, 1141
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	8 cut(s)	284, 310, 338, 683, 799, 970, 1058, 1115
RsaNI	GTAC	8 cut(s)	283, 309, 337, 682, 798, 969, 1057, 1114
RseI	CAYNNNNRTG	1 cut(s)	944
SalI	GTCGAC	1 cut(s)	849
SaqAI	TTAA	4 cut(s)	234, 708, 869, 876
SatI	GCNGC	5 cut(s)	558, 831, 1017, 1137, 1140
Sau3AI	GATC	2 cut(s)	509, 927
Sau96I	GGNCC	1 cut(s)	569
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	4 cut(s)	198, 590, 623, 846
ScrFI	CCNGG	2 cut(s)	223, 749
SfaNI	GCATC	1 cut(s)	1003
SfcI	CTRYAG	3 cut(s)	312, 1017, 1137
SfuI	TTCGAA	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	944
Sse9I	AATT	2 cut(s)	235, 1047
SsiI	CCGC	3 cut(s)	23, 533, 846
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	3 cut(s)	561, 657, 695
StyD4I	CCNGG	2 cut(s)	221, 747
StyI	CCWWGG	2 cut(s)	656, 1001
TaaI	ACNGT	2 cut(s)	313, 593
TaiI	ACGT	4 cut(s)	269, 503, 548, 1115
TaqI	TCGA	3 cut(s)	541, 850, 1011
TasI	AATT	2 cut(s)	235, 1047
TatI	WGTACW	4 cut(s)	282, 308, 336, 1056
TfiI	GAWTC	4 cut(s)	49, 421, 437, 901
Tru1I	TTAA	4 cut(s)	234, 708, 869, 876
Tru9I	TTAA	4 cut(s)	234, 708, 869, 876
TscAI	CASTG	4 cut(s)	529, 598, 930, 1079
TseFI	GTSAC	2 cut(s)	593, 937
TseI	GCWGC	5 cut(s)	557, 830, 1016, 1136, 1139
Tsp45I	GTSAC	2 cut(s)	593, 937
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	2 cut(s)	201, 699
TspRI	CASTG	4 cut(s)	529, 598, 930, 1079
XceI	RCATGY	1 cut(s)	1000
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XmaJI	CCTAGG	1 cut(s)	656
XmiI	GTMKAC	2 cut(s)	744, 850
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	3 cut(s)	561, 657, 695
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.