Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010752

Physical Location & Seq

Genomic Coordinates Reverse (-)

17546577 .. 17549559

Gene Structure 2983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGAAGCTCGTCGAAGGAAGAGACGGCGAGTGACGGAGATACGGCGAGCGGTGGCGCCTCACCGTCCAACGACGGCAGACTCTTCTCGGAGGGCGAGCGTGTTCTCGCTTACCATGGTCCTCGCGTCTACGGAGCCAAGGTTCAAAAGGTCGAGCTTCGGAAAAAGGAGTGGAAATACTTTGTGCACTATCTTGGTTGGAACAAAAATTGGGATGAATGGGTTAGTGCGGATAGATTGTTGAAACATACCGAGGAGAATCTTGTCAAACAGAAAGCTCTAGACAAAAAGCAAGGAGTTGAAAAAGGTACCAAGTCTGGCCGTTCCGCTCAGACAAAAACTAGAAGCTCTGCAGACACAAAGGCTGATAAAGATGACACCAAGACCAATGCTGCAAAAGGGAAGAAACGAAAGCACGAGTCAGGCAATGAGAAGGATAATGTAACGGCGGAGAAGCTAATGAAGATCCAAATTCCCGCATCACTTAAAAAGCAACTCACTGACGACTGGGAGTATATTGCGCAGAAGGACAAGGTTGTGAAACTTCCTCGTTCACCTAACGTCGATGAGATATTGTCCAAGTACCTTGAATTCAAAACCAAGAAGGATGGAATGGTAACTGATTCGGTCGCTGAAATATTGAAAGGCATAAGGAGTTATTTCGACAAGGCATTGCCAGTGATGCTCCTATATAAGAAAGAGAGGCGACAATACCAAGAATCAATCGTGGATGATACTTCACCTTCAACTGTTTATGGCGCCGAGCATTTGCTCCGTCTCTTTGTCAAGTTGCCAGATCTTTTTTCATATGTAAACATGGAAGAAGAAACATGGAGTCGCATGCAACAAACATTATCAGACTTCCTCAAGTTTATTCAGAAGAATCAGAGCACTTTCTTGCTACCATCAGCATATGATTCTGATAAGGTTTCAGATGGTAAAGGCAAAGGAAAAGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

320

Amino Acids

36.38

Weight (kDa)

9.21

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL3_chromo-like	PF22732	29 - 95	5.3e-16	MSL3 chromodomain-like
Tudor-knot	PF11717	30 - 81	6.3e-13	RNA binding activity-knot of a chromodomain
MRG	PF05712	135 - 306	1.9e-47	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37280
fragaria_vesca	FvH4_1g16800 FvH4_1g16800 FvH4_1g16800 FvH4_1g16800
malus_domestica	MD02G1179200.v1.1 MD15G1289100.v1.1
prunus_persica	Prupe.6G228700_v2.0.a1 Prupe.6G228700_v2.0.a1
pyrus_communis	pycom02g14520 pycom15g25270
rosa_chinensis	RchiOBHm_Chr2g0106701
rosa_laevigata	RLG00000017532
rosa_roxburghii	Rroxscaffold_2G00136870
rosa_rugosa	Rorug02G0137900
rosa_samantha	Rh2AG188900 Rh2BG200100 Rh2BG200300 Rh2CG194000
rosa_wichuraiana	Rw2G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	522
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	3 cut(s)	56, 308, 758
AccBSI	CCGCTC	2 cut(s)	51, 329
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	126
AciI	CCGC	5 cut(s)	51, 230, 327, 449, 477
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	471, 590
AcyI	GRCGYC	2 cut(s)	57, 759
AfaI	GTAC	2 cut(s)	310, 584
AgsI	TTSAA	7 cut(s)	146, 244, 302, 590, 595, 643, 747
AloI	GAACNNNNNNTCC	2 cut(s)	126, 158
AluBI	AGCT	5 cut(s)	9, 157, 278, 348, 457
AluI	AGCT	5 cut(s)	9, 157, 278, 348, 457
Alw21I	GWGCWC	2 cut(s)	189, 893
Alw26I	GTCTC	2 cut(s)	17, 782
Alw44I	GTGCAC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	460
AoxI	GGCC	1 cut(s)	319
ApaLI	GTGCAC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	2 cut(s)	471, 590
Asp718I	GGTACC	1 cut(s)	308
AspLEI	GCGC	3 cut(s)	59, 523, 761
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	54, 546, 732
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	189
BanI	GGYRCC	3 cut(s)	56, 308, 758
BauI	CACGAG	1 cut(s)	416
Bbv12I	GWGCWC	2 cut(s)	189, 893
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	3 cut(s)	602, 913, 929
BceAI	ACGGC	5 cut(s)	42, 60, 91, 306, 462
BcoDI	GTCTC	2 cut(s)	17, 782
BfaI	CTAG	2 cut(s)	281, 342
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	2 cut(s)	60, 762
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	4 cut(s)	58, 136, 310, 760
BmrI	ACTGGG	1 cut(s)	517
BmsI	GCATC	2 cut(s)	488, 672
BmuI	ACTGGG	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	851
BsaHI	GRCGYC	2 cut(s)	57, 759
BsaJI	CCNNGG	3 cut(s)	115, 138, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse1I	ACTGG	2 cut(s)	512, 677
Bse3DI	GCAATG	2 cut(s)	433, 671
BseDI	CCNNGG	3 cut(s)	115, 138, 252
BseGI	GGATG	3 cut(s)	220, 613, 736
BseMI	GCAATG	2 cut(s)	433, 671
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	512, 677
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	630
BshFI	GGCC	1 cut(s)	321
BshNI	GGYRCC	3 cut(s)	56, 308, 758
BsiEI	CGRYCG	1 cut(s)	630
BsiHKAI	GWGCWC	2 cut(s)	189, 893
BsmAI	GTCTC	2 cut(s)	17, 782
BsmBI	CGTCTC	2 cut(s)	17, 782
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	189, 893
Bsp143I	GATC	2 cut(s)	465, 796
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	5 cut(s)	51, 230, 327, 449, 477
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	4 cut(s)	58, 136, 310, 760
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	460
BspT107I	GGYRCC	3 cut(s)	56, 308, 758
BsrBI	CCGCTC	2 cut(s)	51, 329
BsrDI	GCAATG	2 cut(s)	433, 671
BsrI	ACTGG	2 cut(s)	512, 677
BssECI	CCNNGG	3 cut(s)	115, 138, 252
BssMI	GATC	2 cut(s)	465, 796
BssNI	GRCGYC	2 cut(s)	57, 759
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	2 cut(s)	115, 138
Bst2BI	CACGAG	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	66, 751
Bst6I	CTCTTC	2 cut(s)	15, 89
BstACI	GRCGYC	2 cut(s)	57, 759
BstC8I	GCNNGC	3 cut(s)	49, 98, 842
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	220, 613, 736
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	2 cut(s)	60, 762
BstHHI	GCGC	3 cut(s)	59, 523, 761
BstKTI	GATC	2 cut(s)	468, 799
BstMAI	GTCTC	2 cut(s)	17, 782
BstMBI	GATC	2 cut(s)	465, 796
BstMCI	CGRYCG	1 cut(s)	630
BstMWI	GCNNNNNNNGC	1 cut(s)	682
BstNSI	RCATGY	1 cut(s)	844
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	189
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	465, 796
BstYI	RGATCY	2 cut(s)	465, 796
BsuRI	GGCC	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	3 cut(s)	220, 613, 736
BtsIMutI	CAGTG	2 cut(s)	498, 684
Cac8I	GCNNGC	3 cut(s)	49, 98, 842
CfoI	GCGC	3 cut(s)	59, 523, 761
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	309, 583
CviAII	CATG	4 cut(s)	116, 817, 831, 841
CviJI	RGCY	8 cut(s)	9, 137, 157, 278, 321, 348, 365, 457
CviKI_1	RGCY	8 cut(s)	9, 137, 157, 278, 321, 348, 365, 457
CviQI	GTAC	2 cut(s)	309, 583
DdeI	CTNAG	1 cut(s)	330
DinI	GGCGCC	2 cut(s)	58, 760
DpnI	GATC	2 cut(s)	467, 798
DpnII	GATC	2 cut(s)	465, 796
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	15, 89
EarI	CTCTTC	2 cut(s)	15, 89
EciI	GGCGGA	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	115, 138
Eco47I	GGWCC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	590
EcoT14I	CCWWGG	2 cut(s)	115, 138
EgeI	GGCGCC	2 cut(s)	58, 760
EheI	GGCGCC	2 cut(s)	58, 760
ErhI	CCWWGG	2 cut(s)	115, 138
Esp3I	CGTCTC	2 cut(s)	17, 782
FaeI	CATG	4 cut(s)	119, 820, 834, 844
FatI	CATG	4 cut(s)	115, 816, 830, 840
FauI	CCCGC	1 cut(s)	484
FauNDI	CATATG	2 cut(s)	808, 913
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	3 cut(s)	227, 620, 743
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	2 cut(s)	281, 342
FspI	TGCGCA	1 cut(s)	522
GlaI	GCGC	3 cut(s)	58, 522, 760
GluI	GCNGC	1 cut(s)	393
HaeII	RGCGCY	2 cut(s)	60, 762
HaeIII	GGCC	1 cut(s)	321
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	3 cut(s)	59, 523, 761
Hin1I	GRCGYC	2 cut(s)	57, 759
Hin1II	CATG	4 cut(s)	119, 820, 834, 844
Hin6I	GCGC	3 cut(s)	57, 521, 759
HinP1I	GCGC	3 cut(s)	57, 521, 759
HinfI	GANTC	8 cut(s)	81, 259, 419, 623, 719, 835, 883, 917
HphI	GGTGA	3 cut(s)	54, 546, 732
Hpy166II	GTNNAC	4 cut(s)	130, 187, 554, 814
Hpy188I	TCNGA	8 cut(s)	91, 162, 333, 859, 879, 888, 922, 934
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	4 cut(s)	130, 187, 554, 814
Hpy99I	CGWCG	3 cut(s)	16, 77, 566
HpyAV	CCTTC	5 cut(s)	10, 427, 520, 598, 753
HpyCH4III	ACNGT	2 cut(s)	66, 751
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	4 cut(s)	187, 353, 395, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	682
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	2 cut(s)	57, 759
Hsp92II	CATG	4 cut(s)	119, 820, 834, 844
HspAI	GCGC	3 cut(s)	57, 521, 759
KasI	GGCGCC	2 cut(s)	56, 758
KpnI	GGTACC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	465, 796
LmnI	GCTCC	3 cut(s)	134, 690, 777
LpnPI	CCDG	5 cut(s)	303, 408, 493, 690, 807
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	488, 672
MaeI	CTAG	2 cut(s)	281, 342
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	32, 442, 616
MalI	GATC	2 cut(s)	467, 798
MbiI	CCGCTC	2 cut(s)	51, 329
MboI	GATC	2 cut(s)	465, 796
MboII	GAAGA	7 cut(s)	32, 76, 415, 475, 833, 836, 892
MflI	RGATCY	2 cut(s)	465, 796
MhlI	GDGCHC	2 cut(s)	189, 893
MluCI	AATT	3 cut(s)	208, 471, 590
Mly113I	GGCGCC	2 cut(s)	57, 759
MlyI	GAGTC	3 cut(s)	75, 428, 844
MmeI	TCCRAC	2 cut(s)	93, 179
MnlI	CCTC	7 cut(s)	70, 85, 132, 247, 558, 696, 875
MseI	TTAA	1 cut(s)	486
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	682
NarI	GGCGCC	2 cut(s)	57, 759
NcoI	CCATGG	1 cut(s)	115
NdeI	CATATG	2 cut(s)	808, 913
NdeII	GATC	2 cut(s)	465, 796
NlaIII	CATG	4 cut(s)	119, 820, 834, 844
NlaIV	GGNNCC	4 cut(s)	58, 136, 310, 760
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	1 cut(s)	32
NsbI	TGCGCA	1 cut(s)	522
NspI	RCATGY	1 cut(s)	844
PaeI	GCATGC	1 cut(s)	844
PfeI	GAWTC	5 cut(s)	259, 623, 719, 883, 917
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	3 cut(s)	75, 427, 843
PluTI	GGCGCC	2 cut(s)	60, 762
PpsI	GAGTC	3 cut(s)	75, 427, 843
PspN4I	GGNNCC	4 cut(s)	58, 136, 310, 760
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	465, 796
RsaI	GTAC	2 cut(s)	310, 584
RsaNI	GTAC	2 cut(s)	309, 583
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	465, 796
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	3 cut(s)	75, 428, 844
SduI	GDGCHC	2 cut(s)	189, 893
SfaNI	GCATC	2 cut(s)	488, 672
SfcI	CTRYAG	1 cut(s)	351
SfoI	GGCGCC	2 cut(s)	58, 760
SinI	GGWCC	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SphI	GCATGC	1 cut(s)	844
Sse9I	AATT	3 cut(s)	208, 471, 590
SsiI	CCGC	5 cut(s)	51, 230, 327, 449, 477
SspDI	GGCGCC	2 cut(s)	56, 758
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	2 cut(s)	281, 342
StyI	CCWWGG	2 cut(s)	115, 138
TaaI	ACNGT	2 cut(s)	66, 751
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	14, 153, 564, 663
TaqII	GACCGA	1 cut(s)	616
TasI	AATT	3 cut(s)	208, 471, 590
TfiI	GAWTC	5 cut(s)	259, 623, 719, 883, 917
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	2 cut(s)	505, 684
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	231, 476, 795
TspGWI	ACGGA	3 cut(s)	51, 147, 764
TspRI	CASTG	2 cut(s)	505, 684
VneI	GTGCAC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	2 cut(s)	471, 590
XbaI	TCTAGA	1 cut(s)	280
XceI	RCATGY	1 cut(s)	844
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	281, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.