Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010752

Physical Location & Seq

Genomic Coordinates Reverse (-)

18375604 .. 18379580

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG200300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGGAACTCGTCGACGGACTACTCGGCCTCCGACGGCGACGCTCCGGTCTTCTCCGAAGGCGAGAAGGTCCTCGCCTTCCACAACACTCCCATCTACGAAGCCAAGGTTCAAAAGGCGGAGCTGAGGAAAAACGAATGGAAATACTTTGTTCACTATCTTGGTTGGAATAAAGTTTGGGACGAATGGGTAGGTGTGGATTGCCTGTTGAAACATAATGAAGAGAATATAAAGAAGCAACAGGCTCTTAACAAGAAACAGGACATAATTACAAAGTCTGGACATTTGACTCAAATGAAGCCAAAAAGCCCTACTGATGCAAAAATGGAGAAAGAGGAGCAGAAGAACAATGTGGCAGAAGGGAAGAAGCGAAAGAATGACTGTGGTGAGGACACTGTTGCCTTGGGAAAACTTGTCAAGATTCAAATTCCTTCAAAATTAAGGAAGCAAGTCATTGATGATCAGGAATTTGCTTCTCAGCTGGATAAGCATCACAAGGAGGCAGATGGGTGGAGGGGTAAATTTTTTCCACTTTATGACAGGCTTGGTTATATATTCAAAGTGGACTGTGCACTTGGAGAAGGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

196

Amino Acids

22.46

Weight (kDa)

8.27

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL3_chromo-like	PF22732	18 - 84	4.3e-15	MSL3 chromodomain-like
Tudor-knot	PF11717	19 - 68	7.2e-12	RNA binding activity-knot of a chromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37280
fragaria_vesca	FvH4_1g16800 FvH4_1g16800 FvH4_1g16800 FvH4_1g16800
malus_domestica	MD02G1179200.v1.1 MD15G1289100.v1.1
prunus_persica	Prupe.6G228700_v2.0.a1 Prupe.6G228700_v2.0.a1
pyrus_communis	pycom02g14520 pycom15g25270
rosa_chinensis	RchiOBHm_Chr2g0106701
rosa_laevigata	RLG00000017532
rosa_roxburghii	Rroxscaffold_2G00136870
rosa_rugosa	Rorug02G0137900
rosa_samantha	Rh2AG188900 Rh2BG200100 Rh2BG200300 Rh2CG194000
rosa_wichuraiana	Rw2G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	1 cut(s)	119
AcsI	RAATTY	3 cut(s)	426, 467, 521
AgsI	TTSAA	5 cut(s)	113, 211, 425, 435, 559
AluBI	AGCT	2 cut(s)	124, 481
AluI	AGCT	2 cut(s)	124, 481
Alw21I	GWGCWC	1 cut(s)	574
Alw44I	GTGCAC	1 cut(s)	570
AoxI	GGCC	1 cut(s)	27
ApaLI	GTGCAC	1 cut(s)	570
ApoI	RAATTY	3 cut(s)	426, 467, 521
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	574
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	574
BbvCI	CCTCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	101, 500
BceAI	ACGGC	1 cut(s)	52
BclI	TGATCA	1 cut(s)	460
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmsI	GCATC	2 cut(s)	307, 499
BpiI	GAAGAC	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	105, 402
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse8I	GATNNNNATC	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	105, 402
BseJI	GATNNNNATC	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	116, 491
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	574
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	1 cut(s)	460
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	117, 490
BssECI	CCNNGG	2 cut(s)	105, 402
BssMI	GATC	1 cut(s)	460
BssT1I	CCWWGG	2 cut(s)	105, 402
Bst4CI	ACNGT	3 cut(s)	383, 397, 569
Bst6I	CTCTTC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	125, 477
BstKTI	GATC	1 cut(s)	463
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	50
CviJI	RGCY	8 cut(s)	29, 104, 124, 245, 301, 309, 481, 544
CviKI_1	RGCY	8 cut(s)	29, 104, 124, 245, 301, 309, 481, 544
DdeI	CTNAG	2 cut(s)	125, 477
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	105, 402
Eco47I	GGWCC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	105, 402
ErhI	CCWWGG	2 cut(s)	105, 402
FaiI	YATR	6 cut(s)	216, 230, 266, 537, 552, 554
FaqI	GGGAC	1 cut(s)	194
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	289, 421
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	4 cut(s)	15, 154, 565, 572
Hpy188I	TCNGA	2 cut(s)	34, 58
Hpy188III	TCNNGA	4 cut(s)	279, 418, 464, 588
Hpy8I	GTNNAC	4 cut(s)	15, 154, 565, 572
Hpy99I	CGWCG	4 cut(s)	16, 19, 38, 44
HpyAV	CCTTC	6 cut(s)	53, 61, 88, 353, 441, 575
HpyCH4III	ACNGT	3 cut(s)	383, 397, 569
HpyCH4V	TGCA	2 cut(s)	320, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	2 cut(s)	125, 477
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	3 cut(s)	49, 121, 337
LpnPI	CCDG	8 cut(s)	60, 218, 227, 245, 264, 449, 467, 526
LweI	GCATC	2 cut(s)	307, 499
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	4 cut(s)	43, 233, 355, 376
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	5 cut(s)	267, 426, 437, 467, 521
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	57, 146
MnlI	CCTC	7 cut(s)	40, 83, 120, 328, 382, 493, 507
MseI	TTAA	2 cut(s)	249, 440
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	487
NdeII	GATC	1 cut(s)	460
NmeAIII	GCCGAG	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	70
PspPPI	RGGWCCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	481
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	249, 440
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	574
SetI	ASST	5 cut(s)	72, 111, 126, 196, 483
SfaNI	GCATC	2 cut(s)	307, 499
SgrDI	CGTCGACG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	5 cut(s)	267, 426, 437, 467, 521
SsiI	CCGC	1 cut(s)	119
StyI	CCWWGG	2 cut(s)	105, 402
TaaI	ACNGT	3 cut(s)	383, 397, 569
TaqI	TCGA	1 cut(s)	14
TasI	AATT	5 cut(s)	267, 426, 437, 467, 521
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	2 cut(s)	249, 440
Tru9I	TTAA	2 cut(s)	249, 440
TscAI	CASTG	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	234, 311
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	400
VneI	GTGCAC	1 cut(s)	570
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	3 cut(s)	426, 467, 521
XmiI	GTMKAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.