Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010752

Physical Location & Seq

Genomic Coordinates Forward (+)

23243635 .. 23249794

Gene Structure 6160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G228700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGAACTCGTCCAGAGATGACTCGCCCACCGACGGCGACACCTCTAGCGGCGACGCTCCTCCCTCCAATTCCAGCCTCTACTCCGAGGGTGAGAAGATCCTTGCCTACCATGGCCCTCGCATCTACGAAGCCAAGGTTCAAAAGGCAGAGCTGAGGAAAAATGAATGGAGATACTTTGTTCACTACCTCGGTTGGAATAAAAATTGGGACGAATGGGTAGGTGGGGATCGCCTGTTGAAAAATACTGAAGATAATATCATGAAGCAGCAAGCTCTTGACAAGAAACAAGGTGTGGACAAGAATACAAAATCAGGACGCTCAGCTCAAACAAAGCCAAAAAGTTCTTCTGATGCAAAAGCAGAGAAAGAAGACCACAAGAACAATGTGACAAAGGGGAAGAAGCGGAAGAATGACTTAGGCGCTGAGAAGGACACTGTGTCCCTGGAAAAGCTTGTCAAGATTCAAATTCCTCCAACACTAAGGAAGCAACTTGTTGATGATTGGGAATTCATCTTTCAGCAGGATAAGCTTGTTAAACTTCCTCGTTCCCCAACTGTAGATGACATTTTGCAGAAGTACCTCGACTACAGGACAAAGAAGGATGGCAAGGTGACTGATCCAGTAGGTGAAGTCCTGAAAGGAATACGATGTTACTTTGACAAAGCATTGCCAGTGATGCTCTTATACAAAAAGGAACGCAAACAGTATCAAGAAACAGTTGTAGGTGATGTCTCTCCATCAACAATATATGGTGCCGAACATTTACTACGACTCTTTGTAAAGTTACCAGAGCTTTTGGCTTATGTCAACATTGAGGAGGAAACACAGACCCGCTTACAGCAGAAATTACTTGATTTTCTCAAGTTTCTGCAGAAAAATCACAGTACATTCTTCCTTTCTGCTTATGATGGCTCAAAAAGTGTTGAAGGGAAAGGCAAGGGGAAACATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

319

Amino Acids

36.43

Weight (kDa)

9.18

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37280
fragaria_vesca	FvH4_1g16800 FvH4_1g16800 FvH4_1g16800 FvH4_1g16800
malus_domestica	MD02G1179200.v1.1 MD15G1289100.v1.1
prunus_persica	Prupe.6G228700_v2.0.a1 Prupe.6G228700_v2.0.a1
pyrus_communis	pycom02g14520 pycom15g25270
rosa_chinensis	RchiOBHm_Chr2g0106701
rosa_laevigata	RLG00000017532
rosa_roxburghii	Rroxscaffold_2G00136870
rosa_rugosa	Rorug02G0137900
rosa_samantha	Rh2AG188900 Rh2BG200100 Rh2BG200300 Rh2CG194000
rosa_wichuraiana	Rw2G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	755
AciI	CCGC	3 cut(s)	51, 406, 835
AclWI	GGATC	3 cut(s)	94, 237, 614
AcsI	RAATTY	2 cut(s)	468, 509
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	581, 889
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	143, 241, 467, 929
AhdI	GACNNNNNGTC	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	444
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
AluBI	AGCT	6 cut(s)	154, 275, 326, 454, 532, 796
AluI	AGCT	6 cut(s)	154, 275, 326, 454, 532, 796
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	3 cut(s)	94, 237, 614
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	468, 509
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	4 cut(s)	104, 625, 641, 740
BanI	GGYRCC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	3 cut(s)	599, 748, 905
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	3 cut(s)	558, 589, 872
BfoI	RGCGCY	1 cut(s)	426
BisI	GCNGC	2 cut(s)	52, 269
BlpI	GCTNAGC	1 cut(s)	322
BlsI	GCNGC	2 cut(s)	53, 270
Bme1390I	CCNGG	1 cut(s)	446
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	132, 343, 669
BpiI	GAAGAC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	848
BsaJI	CCNNGG	5 cut(s)	87, 112, 135, 190, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	623, 674
Bse3DI	GCAATG	1 cut(s)	668
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	5 cut(s)	87, 112, 135, 190, 444
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	3 cut(s)	146, 336, 417
BseNI	ACTGG	2 cut(s)	623, 674
BseRI	GAGGAG	2 cut(s)	51, 833
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	755
BslFI	GGGAC	2 cut(s)	224, 427
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	739
BsmFI	GGGAC	2 cut(s)	224, 427
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	99, 229, 619
Bsp1720I	GCTNAGC	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	3 cut(s)	51, 406, 835
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	3 cut(s)	147, 335, 418
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	757
BspMAI	CTGCAG	1 cut(s)	876
BspPI	GGATC	3 cut(s)	94, 237, 614
BspT107I	GGYRCC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	623, 674
BssECI	CCNNGG	5 cut(s)	87, 112, 135, 190, 444
BssMI	GATC	3 cut(s)	99, 229, 619
BssT1I	CCWWGG	2 cut(s)	112, 135
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	5 cut(s)	439, 559, 708, 721, 887
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	5 cut(s)	155, 322, 418, 426, 482
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	610
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	3 cut(s)	102, 232, 622
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	3 cut(s)	99, 229, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	529, 679
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	3 cut(s)	558, 589, 872
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	435, 681
Cac8I	GCNNGC	1 cut(s)	273
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	2 cut(s)	65, 327
Csp6I	GTAC	2 cut(s)	580, 888
CviAII	CATG	3 cut(s)	113, 262, 950
CviQI	GTAC	2 cut(s)	580, 888
DdeI	CTNAG	5 cut(s)	155, 322, 418, 426, 482
DpnI	GATC	3 cut(s)	101, 231, 621
DpnII	GATC	3 cut(s)	99, 229, 619
DriI	GACNNNNNGTC	1 cut(s)	439
Eam1105I	GACNNNNNGTC	1 cut(s)	439
Eco130I	CCWWGG	2 cut(s)	112, 135
Eco57I	CTGAAG	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	112, 135
ErhI	CCWWGG	2 cut(s)	112, 135
FaeI	CATG	3 cut(s)	116, 265, 953
FaiI	YATR	8 cut(s)	114, 263, 688, 751, 753, 807, 909, 951
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	2 cut(s)	224, 427
FatI	CATG	3 cut(s)	112, 261, 949
FauI	CCCGC	1 cut(s)	842
Fnu4HI	GCNGC	2 cut(s)	52, 269
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	2 cut(s)	52, 269
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	2 cut(s)	52, 269
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	117
HgaI	GACGC	2 cut(s)	65, 327
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	3 cut(s)	116, 265, 953
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	2 cut(s)	452, 530
HinfI	GANTC	3 cut(s)	23, 463, 774
HphI	GGTGA	4 cut(s)	104, 625, 641, 740
Hpy166II	GTNNAC	3 cut(s)	184, 298, 811
Hpy188I	TCNGA	2 cut(s)	88, 352
Hpy188III	TCNNGA	7 cut(s)	15, 262, 278, 315, 460, 637, 713
Hpy8I	GTNNAC	3 cut(s)	184, 298, 811
Hpy99I	CGWCG	2 cut(s)	38, 59
HpyAV	CCTTC	3 cut(s)	424, 595, 923
HpyCH4III	ACNGT	5 cut(s)	439, 559, 708, 721, 887
HpyCH4V	TGCA	3 cut(s)	356, 574, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	529, 679
HpyF3I	CTNAG	5 cut(s)	155, 322, 418, 426, 482
Hsp92II	CATG	3 cut(s)	116, 265, 953
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	99, 229, 619
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	3 cut(s)	132, 343, 669
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	4 cut(s)	388, 613, 653, 786
MalI	GATC	3 cut(s)	101, 231, 621
MboI	GATC	3 cut(s)	99, 229, 619
MboII	GAAGA	7 cut(s)	109, 263, 339, 383, 412, 421, 886
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	5 cut(s)	70, 205, 468, 509, 848
MlyI	GAGTC	2 cut(s)	17, 768
MmeI	TCCRAC	2 cut(s)	176, 500
MseI	TTAA	1 cut(s)	537
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	529, 679
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	3 cut(s)	99, 229, 619
NlaIII	CATG	3 cut(s)	116, 265, 953
NlaIV	GGNNCC	1 cut(s)	757
NmuCI	GTSAC	2 cut(s)	388, 613
PagI	TCATGA	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	53, 270
PleI	GAGTC	2 cut(s)	17, 768
PpsI	GAGTC	2 cut(s)	17, 768
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	1 cut(s)	116
PsrI	GAACNNNNNNTAC	2 cut(s)	753, 785
PstI	CTGCAG	1 cut(s)	876
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	2 cut(s)	581, 889
RsaNI	GTAC	2 cut(s)	580, 888
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	2 cut(s)	52, 269
Sau3AI	GATC	3 cut(s)	99, 229, 619
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	2 cut(s)	17, 768
ScrFI	CCNGG	1 cut(s)	446
SfaNI	GCATC	3 cut(s)	132, 343, 669
SfcI	CTRYAG	3 cut(s)	558, 589, 872
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	5 cut(s)	70, 205, 468, 509, 848
SsiI	CCGC	3 cut(s)	51, 406, 835
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	2 cut(s)	112, 135
TaaI	ACNGT	5 cut(s)	439, 559, 708, 721, 887
TaqI	TCGA	1 cut(s)	585
TasI	AATT	5 cut(s)	70, 205, 468, 509, 848
TatI	WGTACW	1 cut(s)	887
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	2 cut(s)	442, 681
TseFI	GTSAC	2 cut(s)	388, 613
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	2 cut(s)	388, 613
TspDTI	ATGAA	3 cut(s)	180, 278, 502
TspRI	CASTG	2 cut(s)	442, 681
XapI	RAATTY	2 cut(s)	468, 509
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.