Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010752

Physical Location & Seq

Genomic Coordinates Reverse (-)

19686220 .. 19691533

Gene Structure 5314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGAAATTCATCGAGAGACGACTCCGTCACCGACGGAGACACCTCCAGCGGCGACGCTCCTCCCTCCAATTCCAGCCTCTACTCCGAGGGCGAGAAGATCCTCGCCTACCACGGCCCTCGTATCTACGAAGCCAAGGTTCAAAAAGCAGAGCTGAGGAAAAATGAATGGAGATACTTTGTTCACTACCTGAAATCATTACTGTGGCTTGGACATCTTGCCAACAGTTGGGACGAATGGGTAGGTGGAGATCGCTTGTTGAAACATACTGAAGATAATATATTGAAGCAGCAAGCTCTTGACAAGAAACAGGGCGTGGACAAGAATACAAAATCAGGACGCTCAGCTCAGACGAAGCCAAAAATTTCTACTGATGTAAAAGCAGAGAAAGAGGACCACAAGAACAATGTGACGAAAGGGAAGAAGCGGAAGAATGACTCAGGCACTGAGAAGGACACTGCTGCACTGGAAAAGCTTGTCAAGATTCAAATTCCGTCAACACTAAGGAAACAGCTTGTTGATGACTGGGAATTTGTTTCGCAGCAGGACAAGCTTGTAATACTTCCACGTTCTCCAACTGTGGATGACATTTTGCAGAAATACCTTGACTACAGAACAAAGAAGGATGGAAAGGTGACTGATCCAGTTGGTGAAATCCTGAAAGGAATACGATGTTACTTTGACAGAGCTTTGCCAGTGATGCTCTTATACAAAAAGGAACGCAAACAGTATGTTGAAACAGTTGTAGGTGATGTCTCCCCGTCAACAATATATGGCGCTGAACATTTACTGCGACTCTTTGTTAAGTTGCCGGAGCTTTTGGCATATGTTAACATCGAGGAGGAAACACAAAGCCGCTTGCAGCAGAAATTACTCGATTTCCTCAAGTTTATGCAGAAAAATCAGAGTACGTTCTTCCTTTCTGCTTATGATGGCTCAAAAAGCGTTGAAGGGAAAGGTAAGGGAAAACATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

326

Amino Acids

37.08

Weight (kDa)

9.13

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37280
fragaria_vesca	FvH4_1g16800 FvH4_1g16800 FvH4_1g16800 FvH4_1g16800
malus_domestica	MD02G1179200.v1.1 MD15G1289100.v1.1
prunus_persica	Prupe.6G228700_v2.0.a1 Prupe.6G228700_v2.0.a1
pyrus_communis	pycom02g14520 pycom15g25270
rosa_chinensis	RchiOBHm_Chr2g0106701
rosa_laevigata	RLG00000017532
rosa_roxburghii	Rroxscaffold_2G00136870
rosa_rugosa	Rorug02G0137900
rosa_samantha	Rh2AG188900 Rh2BG200100 Rh2BG200300 Rh2CG194000
rosa_wichuraiana	Rw2G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	228
AciI	CCGC	3 cut(s)	51, 427, 856
AclWI	GGATC	2 cut(s)	94, 635
AcsI	RAATTY	4 cut(s)	7, 363, 489, 530
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	910
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	6 cut(s)	143, 262, 286, 488, 737, 950
AluBI	AGCT	8 cut(s)	154, 296, 347, 475, 514, 553, 689, 817
AluI	AGCT	8 cut(s)	154, 296, 347, 475, 514, 553, 689, 817
Alw26I	GTCTC	3 cut(s)	12, 33, 760
AlwI	GGATC	2 cut(s)	94, 635
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	4 cut(s)	289, 461, 541, 862
ApoI	RAATTY	4 cut(s)	7, 363, 489, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	2 cut(s)	116, 394
AsuHPI	GGTGA	4 cut(s)	22, 646, 662, 761
AvaII	GGWCC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	4 cut(s)	301, 448, 553, 874
BccI	CCATC	2 cut(s)	620, 926
BceAI	ACGGC	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	12, 33, 760
BfmI	CTRYAG	1 cut(s)	610
BfoI	RGCGCY	1 cut(s)	780
BisI	GCNGC	6 cut(s)	52, 290, 462, 542, 856, 863
BlpI	GCTNAGC	1 cut(s)	343
BlsI	GCNGC	6 cut(s)	53, 291, 463, 543, 857, 864
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	116, 394
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	690
BmuI	ACTGGG	1 cut(s)	535
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	869
BsaJI	CCNNGG	3 cut(s)	87, 112, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	4 cut(s)	471, 530, 644, 695
BseDI	CCNNGG	3 cut(s)	87, 112, 135
BseGI	GGATG	2 cut(s)	589, 631
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	5 cut(s)	146, 357, 362, 438, 453
BseNI	ACTGG	4 cut(s)	471, 530, 644, 695
BseRI	GAGGAG	2 cut(s)	51, 854
BseXI	GCAGC	4 cut(s)	301, 448, 553, 874
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	812
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	3 cut(s)	12, 33, 760
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	99, 250, 640
Bsp1720I	GCTNAGC	1 cut(s)	343
BspACI	CCGC	3 cut(s)	51, 427, 856
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	5 cut(s)	147, 356, 361, 439, 452
BspPI	GGATC	2 cut(s)	94, 635
BsrI	ACTGG	4 cut(s)	471, 530, 644, 695
BssECI	CCNNGG	3 cut(s)	87, 112, 135
BssMI	GATC	3 cut(s)	99, 250, 640
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	5 cut(s)	204, 227, 580, 729, 742
BstC8I	GCNNGC	2 cut(s)	294, 860
BstDEI	CTNAG	6 cut(s)	155, 343, 348, 439, 447, 503
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	589, 631
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	3 cut(s)	102, 253, 643
BstMAI	GTCTC	3 cut(s)	12, 33, 760
BstMBI	GATC	3 cut(s)	99, 250, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	550, 700, 942
BstSFI	CTRYAG	1 cut(s)	610
BstV1I	GCAGC	4 cut(s)	301, 448, 553, 874
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	589, 631
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	4 cut(s)	444, 456, 464, 702
Cac8I	GCNNGC	2 cut(s)	294, 860
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	1 cut(s)	779
Cfr13I	GGNCC	2 cut(s)	116, 394
CseI	GACGC	2 cut(s)	65, 348
Csp6I	GTAC	1 cut(s)	909
CviAII	CATG	1 cut(s)	971
CviQI	GTAC	1 cut(s)	909
DdeI	CTNAG	6 cut(s)	155, 343, 348, 439, 447, 503
DpnI	GATC	3 cut(s)	101, 252, 642
DpnII	GATC	3 cut(s)	99, 250, 640
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	974
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	1 cut(s)	970
FauNDI	CATATG	1 cut(s)	826
Fnu4HI	GCNGC	6 cut(s)	52, 290, 462, 542, 856, 863
FokI	GGATG	2 cut(s)	596, 638
Fsp4HI	GCNGC	6 cut(s)	52, 290, 462, 542, 856, 863
GlaI	GCGC	1 cut(s)	778
GluI	GCNGC	6 cut(s)	52, 290, 462, 542, 856, 863
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	780
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	812
HgaI	GACGC	2 cut(s)	65, 348
HhaI	GCGC	1 cut(s)	779
Hin1II	CATG	1 cut(s)	974
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HincII	GTYRAC	3 cut(s)	498, 765, 832
HindII	GTYRAC	3 cut(s)	498, 765, 832
HindIII	AAGCTT	2 cut(s)	473, 551
HinfI	GANTC	4 cut(s)	23, 437, 484, 795
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	1 cut(s)	812
HphI	GGTGA	4 cut(s)	22, 646, 662, 761
Hpy166II	GTNNAC	5 cut(s)	184, 319, 498, 765, 832
Hpy188I	TCNGA	3 cut(s)	88, 351, 906
Hpy188III	TCNNGA	5 cut(s)	15, 299, 336, 481, 658
Hpy8I	GTNNAC	5 cut(s)	184, 319, 498, 765, 832
Hpy99I	CGWCG	2 cut(s)	38, 59
HpyAV	CCTTC	3 cut(s)	445, 616, 944
HpyCH4III	ACNGT	5 cut(s)	204, 227, 580, 729, 742
HpyCH4IV	ACGT	2 cut(s)	568, 911
HpyCH4V	TGCA	4 cut(s)	464, 595, 862, 895
HpyF10VI	GCNNNNNNNGC	3 cut(s)	550, 700, 942
HpyF3I	CTNAG	6 cut(s)	155, 343, 348, 439, 447, 503
HpySE526I	ACGT	2 cut(s)	568, 911
Hsp92II	CATG	1 cut(s)	974
HspAI	GCGC	1 cut(s)	777
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	3 cut(s)	99, 250, 640
LmnI	GCTCC	2 cut(s)	64, 814
Lsp1109I	GCAGC	4 cut(s)	301, 448, 553, 874
LweI	GCATC	1 cut(s)	690
MaeII	ACGT	2 cut(s)	568, 911
MaeIII	GTNAC	4 cut(s)	28, 409, 634, 674
MalI	GATC	3 cut(s)	101, 252, 642
MboI	GATC	3 cut(s)	99, 250, 640
MboII	GAAGA	5 cut(s)	109, 284, 433, 442, 907
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	6 cut(s)	7, 70, 363, 489, 530, 869
MlyI	GAGTC	3 cut(s)	17, 431, 789
MmeI	TCCRAC	1 cut(s)	599
MseI	TTAA	2 cut(s)	804, 831
MslI	CAYNNNNRTG	1 cut(s)	202
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	1 cut(s)	812
MwoI	GCNNNNNNNGC	3 cut(s)	550, 700, 942
NdeI	CATATG	1 cut(s)	826
NdeII	GATC	3 cut(s)	99, 250, 640
NlaIII	CATG	1 cut(s)	974
NmuCI	GTSAC	3 cut(s)	28, 409, 634
PfeI	GAWTC	1 cut(s)	484
PflFI	GACNNNGTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	6 cut(s)	53, 291, 463, 543, 857, 864
PleI	GAGTC	3 cut(s)	17, 431, 789
PpsI	GAGTC	3 cut(s)	17, 431, 789
PspPI	GGNCC	2 cut(s)	116, 394
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	1 cut(s)	910
RsaNI	GTAC	1 cut(s)	909
RseI	CAYNNNNRTG	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	804, 831
SatI	GCNGC	6 cut(s)	52, 290, 462, 542, 856, 863
Sau3AI	GATC	3 cut(s)	99, 250, 640
Sau96I	GGNCC	2 cut(s)	116, 394
SchI	GAGTC	3 cut(s)	17, 431, 789
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	1 cut(s)	610
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	6 cut(s)	7, 70, 363, 489, 530, 869
SsiI	CCGC	3 cut(s)	51, 427, 856
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	5 cut(s)	204, 227, 580, 729, 742
TaiI	ACGT	2 cut(s)	571, 914
TaqI	TCGA	3 cut(s)	14, 837, 876
TasI	AATT	6 cut(s)	7, 70, 363, 489, 530, 869
TauI	GCSGC	2 cut(s)	54, 858
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	804, 831
Tru9I	TTAA	2 cut(s)	804, 831
TscAI	CASTG	4 cut(s)	451, 463, 471, 702
TseFI	GTSAC	3 cut(s)	28, 409, 634
TseI	GCWGC	4 cut(s)	289, 461, 541, 862
Tsp45I	GTSAC	3 cut(s)	28, 409, 634
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	3 cut(s)	16, 51, 483
TspRI	CASTG	4 cut(s)	451, 463, 471, 702
Tth111I	GACNNNGTC	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	4 cut(s)	7, 363, 489, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.