Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010752

Physical Location & Seq

Genomic Coordinates Reverse (-)

26712858 .. 26718951

Gene Structure 6094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1289100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGAAATTCATCGAGAGACGACTCCGTCACCGACGGAGACACCTCCAGCGGCGACGCTCCTCCCTCCAATTCCAGCCTCTACTCCGAGGGCGAGAAGATCCTCGCCTACCACGGCCCTCGTATCTACGAAGCCAAGGTTCAAAAAGCGGAGCTGAGGAAAAATGAATGGAGATACTTTGTTCACTACCTGGGTTGGAATAAAAATTGGGACGAATGGGTAGGTGGAGATCGCTTGTTGAAACATACTGAAGATAATATATTGAAGCAGCAAGCTCTTGACAAGAAACAGGGCGTGGACAAGAATACAAAATCAGGACGCTCAGCTCAGACGAAGCCAAAAATTTCTACTGATGTAAAAGCAGAGAAAGAGGACCACAAGAACAATGTGACTAAAGGGAAGAAGCGGAAGAATGACTCAGGCACTGAGAAGGACACTGCTGCACTGGAAAAGCTTGTCAAGATTCAAATTCCGTCAACACTAAGGAAACAGCTTGTTGATGACTGGGAATTTGTTTCGCAGCAGGATAAGCTTGTAATACTTCCACGTTCTCCAACTGTGGATGACATTTTGCAGAAATACCTTGACTACAGAACAAAGAAGGATGGAAAGGTGACTGATCCAGTTGGTGAAATCCTAAAAGGAATACGATGTTACTTTGACAGAGCTTTGCCAGTGATGCTCTTATACAAAAAGGAACGCAAACAGTATGTTGAAACAGTTGTAGGTGATGTCTCCCCGTCAACAATATATGGCGCTGAACATTTACTGCGACTCTTTGTTAAGTTGCCGGAGCTATTGGCATATGTCAACATCGAGGAGGAAACACAAAGCCGCTTGCAACAGAAATTACTCGATTTTCTCAAGTTTATGCAGAAAAATCAGAGTACGTTCTTCCTTTCTGCTTATGATGTCCCAAAAAGCGTTGAAGGGAAAGGTAAGGGAAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

318

Amino Acids

36.26

Weight (kDa)

9.2

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL3_chromo-like	PF22732	28 - 94	1.6e-15	MSL3 chromodomain-like
Tudor-knot	PF11717	30 - 80	2.1e-12	RNA binding activity-knot of a chromodomain
MRG	PF05712	134 - 303	6.5e-49	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37280
fragaria_vesca	FvH4_1g16800 FvH4_1g16800 FvH4_1g16800 FvH4_1g16800
malus_domestica	MD02G1179200.v1.1 MD15G1289100.v1.1
prunus_persica	Prupe.6G228700_v2.0.a1 Prupe.6G228700_v2.0.a1
pyrus_communis	pycom02g14520 pycom15g25270
rosa_chinensis	RchiOBHm_Chr2g0106701
rosa_laevigata	RLG00000017532
rosa_roxburghii	Rroxscaffold_2G00136870
rosa_rugosa	Rorug02G0137900
rosa_samantha	Rh2AG188900 Rh2BG200100 Rh2BG200300 Rh2CG194000
rosa_wichuraiana	Rw2G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AciI	CCGC	4 cut(s)	51, 149, 406, 835
AclWI	GGATC	2 cut(s)	94, 614
AcsI	RAATTY	4 cut(s)	7, 342, 468, 509
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	889
AgsI	TTSAA	6 cut(s)	143, 241, 265, 467, 716, 929
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	8 cut(s)	154, 275, 326, 454, 493, 532, 668, 796
AluI	AGCT	8 cut(s)	154, 275, 326, 454, 493, 532, 668, 796
Alw26I	GTCTC	3 cut(s)	12, 33, 739
AlwI	GGATC	2 cut(s)	94, 614
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	3 cut(s)	268, 440, 520
ApoI	RAATTY	4 cut(s)	7, 342, 468, 509
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AspLEI	GCGC	1 cut(s)	758
AspS9I	GGNCC	2 cut(s)	116, 373
AsuHPI	GGTGA	4 cut(s)	22, 625, 641, 740
AvaII	GGWCC	1 cut(s)	373
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	280, 427, 532
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	3 cut(s)	12, 33, 739
BfmI	CTRYAG	1 cut(s)	589
BfoI	RGCGCY	1 cut(s)	759
BisI	GCNGC	5 cut(s)	52, 269, 441, 521, 835
BlpI	GCTNAGC	1 cut(s)	322
BlsI	GCNGC	5 cut(s)	53, 270, 442, 522, 836
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	116, 373
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	1 cut(s)	669
BmuI	ACTGGG	1 cut(s)	514
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	848
BsaJI	CCNNGG	4 cut(s)	87, 112, 135, 190
Bse1I	ACTGG	4 cut(s)	450, 509, 623, 674
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	4 cut(s)	87, 112, 135, 190
BseGI	GGATG	2 cut(s)	568, 610
BseMII	CTCAG	5 cut(s)	146, 336, 341, 417, 432
BseNI	ACTGG	4 cut(s)	450, 509, 623, 674
BseRI	GAGGAG	2 cut(s)	51, 833
BseXI	GCAGC	3 cut(s)	280, 427, 532
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	791
BslFI	GGGAC	2 cut(s)	224, 899
BsmAI	GTCTC	3 cut(s)	12, 33, 739
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	224, 899
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	99, 229, 619
Bsp1720I	GCTNAGC	1 cut(s)	322
BspACI	CCGC	4 cut(s)	51, 149, 406, 835
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	5 cut(s)	147, 335, 340, 418, 431
BspPI	GGATC	2 cut(s)	94, 614
BsrI	ACTGG	4 cut(s)	450, 509, 623, 674
BssECI	CCNNGG	4 cut(s)	87, 112, 135, 190
BssMI	GATC	3 cut(s)	99, 229, 619
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	3 cut(s)	559, 708, 721
BstC8I	GCNNGC	2 cut(s)	273, 839
BstDEI	CTNAG	6 cut(s)	155, 322, 327, 418, 426, 482
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	568, 610
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	758
BstKTI	GATC	3 cut(s)	102, 232, 622
BstMAI	GTCTC	3 cut(s)	12, 33, 739
BstMBI	GATC	3 cut(s)	99, 229, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	529, 679
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	589
BstV1I	GCAGC	3 cut(s)	280, 427, 532
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	568, 610
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	4 cut(s)	423, 435, 443, 681
Cac8I	GCNNGC	2 cut(s)	273, 839
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	1 cut(s)	758
Cfr13I	GGNCC	2 cut(s)	116, 373
CseI	GACGC	2 cut(s)	65, 327
Csp6I	GTAC	1 cut(s)	888
CviAII	CATG	1 cut(s)	951
CviQI	GTAC	1 cut(s)	888
DdeI	CTNAG	6 cut(s)	155, 322, 327, 418, 426, 482
DpnI	GATC	3 cut(s)	101, 231, 621
DpnII	GATC	3 cut(s)	99, 229, 619
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	954
FaqI	GGGAC	2 cut(s)	224, 899
FatI	CATG	1 cut(s)	950
FauNDI	CATATG	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	52, 269, 441, 521, 835
FokI	GGATG	2 cut(s)	575, 617
Fsp4HI	GCNGC	5 cut(s)	52, 269, 441, 521, 835
GlaI	GCGC	1 cut(s)	757
GluI	GCNGC	5 cut(s)	52, 269, 441, 521, 835
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	791
HgaI	GACGC	2 cut(s)	65, 327
HhaI	GCGC	1 cut(s)	758
Hin1II	CATG	1 cut(s)	954
Hin6I	GCGC	1 cut(s)	756
HinP1I	GCGC	1 cut(s)	756
HincII	GTYRAC	3 cut(s)	477, 744, 811
HindII	GTYRAC	3 cut(s)	477, 744, 811
HindIII	AAGCTT	2 cut(s)	452, 530
HinfI	GANTC	4 cut(s)	23, 416, 463, 774
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	4 cut(s)	22, 625, 641, 740
Hpy166II	GTNNAC	5 cut(s)	184, 298, 477, 744, 811
Hpy188I	TCNGA	3 cut(s)	88, 330, 885
Hpy188III	TCNNGA	4 cut(s)	15, 278, 315, 460
Hpy8I	GTNNAC	5 cut(s)	184, 298, 477, 744, 811
Hpy99I	CGWCG	2 cut(s)	38, 59
HpyAV	CCTTC	3 cut(s)	424, 595, 923
HpyCH4III	ACNGT	3 cut(s)	559, 708, 721
HpyCH4IV	ACGT	2 cut(s)	547, 890
HpyCH4V	TGCA	4 cut(s)	443, 574, 841, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	529, 679
HpyF3I	CTNAG	6 cut(s)	155, 322, 327, 418, 426, 482
HpySE526I	ACGT	2 cut(s)	547, 890
Hsp92II	CATG	1 cut(s)	954
HspAI	GCGC	1 cut(s)	756
Kzo9I	GATC	3 cut(s)	99, 229, 619
LmnI	GCTCC	3 cut(s)	64, 151, 793
Lsp1109I	GCAGC	3 cut(s)	280, 427, 532
LweI	GCATC	1 cut(s)	669
MaeII	ACGT	2 cut(s)	547, 890
MaeIII	GTNAC	4 cut(s)	28, 388, 613, 653
MalI	GATC	3 cut(s)	101, 231, 621
MboI	GATC	3 cut(s)	99, 229, 619
MboII	GAAGA	5 cut(s)	109, 263, 412, 421, 886
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	7 cut(s)	7, 70, 205, 342, 468, 509, 848
MlyI	GAGTC	3 cut(s)	17, 410, 768
MmeI	TCCRAC	2 cut(s)	176, 578
MseI	TTAA	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	529, 679
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	3 cut(s)	99, 229, 619
NlaIII	CATG	1 cut(s)	954
NmuCI	GTSAC	3 cut(s)	28, 388, 613
PfeI	GAWTC	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	5 cut(s)	53, 270, 442, 522, 836
PleI	GAGTC	3 cut(s)	17, 410, 768
PpsI	GAGTC	3 cut(s)	17, 410, 768
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	2 cut(s)	116, 373
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	1 cut(s)	889
RsaNI	GTAC	1 cut(s)	888
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	5 cut(s)	52, 269, 441, 521, 835
Sau3AI	GATC	3 cut(s)	99, 229, 619
Sau96I	GGNCC	2 cut(s)	116, 373
SchI	GAGTC	3 cut(s)	17, 410, 768
ScrFI	CCNGG	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	669
SfcI	CTRYAG	1 cut(s)	589
SinI	GGWCC	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	7 cut(s)	7, 70, 205, 342, 468, 509, 848
SsiI	CCGC	4 cut(s)	51, 149, 406, 835
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	559, 708, 721
TaiI	ACGT	2 cut(s)	550, 893
TaqI	TCGA	3 cut(s)	14, 816, 855
TasI	AATT	7 cut(s)	7, 70, 205, 342, 468, 509, 848
TauI	GCSGC	2 cut(s)	54, 837
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	4 cut(s)	430, 442, 450, 681
TseFI	GTSAC	3 cut(s)	28, 388, 613
TseI	GCWGC	3 cut(s)	268, 440, 520
Tsp45I	GTSAC	3 cut(s)	28, 388, 613
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	3 cut(s)	16, 51, 462
TspRI	CASTG	4 cut(s)	430, 442, 450, 681
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	4 cut(s)	7, 342, 468, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.