Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010752

Physical Location & Seq

Genomic Coordinates Reverse (-)

15881722 .. 15887888

Gene Structure 6167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1179200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGAAATTCATCGAGAGACGACTCCGTCACCGACGGCGACACCTCCAACGGCGACGCTCCTCCCTCCAATTCCAGCCTCTACTCCGAGGGCGAGAAGATCCTCGCCTACCATGGCCCTCGCATCTACGAAGCCAAGGTTCAAAAGGCAGAGCTGAGGAAAAATGAATGGAGATACTTTGTTCACTACCTTGGTTGGAATAAAAATTGGGACGAATGGGTAGGTGGAGATCGCTTGTTGAAACATACTGAAGATAATATATTGAAGCAGCAAGCTCTTGACAAGAAACAGGGCGTGGACAAGAATACAAAATCAGGACGCTCAGCTCAAACAAAGCCAAAAAGTTCTACTGATGTAAAAGCAGAGAAAGAGGACCACAAGAACAACGTGGCTAAAGGGAAGAAGCGGAAGAATGATTCAGGCACTGAGAAGGACACTGCTGCACTGGAAAAGCTTGTCAAGATTCAAATTCCGTCAACACTAAGGAAGCAACTTGTTGATGACTGGGAATTTGTTTCTCAGCAGGATAAGCTTGTAAAACTTCCACGTTCTCCAACTGTAGACGACATTTTGCAGAAATACCTCGACTACAGGACAAAGAAGGATGGAAAGGTGACTGATCCAGTTGGTGAAATCCTGAAAGGAATACGATGTTACTTTGACAAGGCATTGCCAGTGATGCTCTTATACAAAAAGGAACGCAAACAGTATCTTGAAGCAGTTGTAGGTGATGTCTCTCCGGCAACAATATATGGCGCTGAACATTTACTACGACTCTTTGTTAAGTTGCCGGAGCTGTTGGCATATGTCAACATCGAGGAGGAAACACAAAGCCACTTGCAGCAGAAATTACTTGATTTTCTCAGGTTTATGCAGAAAAATCAGAGTACGTTCTTCCTTTCCGCTTATGATGGCTCAAAAAGCGTTGAAGGGAAAGGTAAGGGAAAACATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

319

Amino Acids

36.3

Weight (kDa)

9.12

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL3_chromo-like	PF22732	28 - 94	1.6e-15	MSL3 chromodomain-like
Tudor-knot	PF11717	30 - 80	2.1e-12	RNA binding activity-knot of a chromodomain
MRG	PF05712	134 - 303	1.4e-48	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37280
fragaria_vesca	FvH4_1g16800 FvH4_1g16800 FvH4_1g16800 FvH4_1g16800
malus_domestica	MD02G1179200.v1.1 MD15G1289100.v1.1
prunus_persica	Prupe.6G228700_v2.0.a1 Prupe.6G228700_v2.0.a1
pyrus_communis	pycom02g14520 pycom15g25270
rosa_chinensis	RchiOBHm_Chr2g0106701
rosa_laevigata	RLG00000017532
rosa_roxburghii	Rroxscaffold_2G00136870
rosa_rugosa	Rorug02G0137900
rosa_samantha	Rh2AG188900 Rh2BG200100 Rh2BG200300 Rh2CG194000
rosa_wichuraiana	Rw2G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	2 cut(s)	406, 903
AclWI	GGATC	2 cut(s)	94, 614
AcsI	RAATTY	3 cut(s)	7, 468, 509
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	889
AgsI	TTSAA	6 cut(s)	143, 241, 265, 467, 716, 929
AluBI	AGCT	6 cut(s)	154, 275, 326, 454, 532, 796
AluI	AGCT	6 cut(s)	154, 275, 326, 454, 532, 796
Alw26I	GTCTC	2 cut(s)	12, 739
AlwI	GGATC	2 cut(s)	94, 614
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	3 cut(s)	268, 440, 841
ApoI	RAATTY	3 cut(s)	7, 468, 509
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AspLEI	GCGC	1 cut(s)	758
AspS9I	GGNCC	2 cut(s)	116, 373
AsuHPI	GGTGA	4 cut(s)	22, 625, 641, 740
AvaII	GGWCC	1 cut(s)	373
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	280, 427, 853
BccI	CCATC	2 cut(s)	599, 905
BceAI	ACGGC	2 cut(s)	52, 67
BcoDI	GTCTC	2 cut(s)	12, 739
BfmI	CTRYAG	2 cut(s)	558, 589
BfoI	RGCGCY	1 cut(s)	759
BisI	GCNGC	3 cut(s)	269, 441, 842
BlpI	GCTNAGC	1 cut(s)	322
BlsI	GCNGC	3 cut(s)	270, 442, 843
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	116, 373
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	2 cut(s)	132, 669
BmuI	ACTGGG	1 cut(s)	514
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	322
BsaJI	CCNNGG	4 cut(s)	87, 112, 135, 190
Bse1I	ACTGG	4 cut(s)	450, 509, 623, 674
Bse3DI	GCAATG	1 cut(s)	668
BseDI	CCNNGG	4 cut(s)	87, 112, 135, 190
BseGI	GGATG	1 cut(s)	610
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	5 cut(s)	146, 336, 417, 533, 877
BseNI	ACTGG	4 cut(s)	450, 509, 623, 674
BseRI	GAGGAG	2 cut(s)	51, 833
BseXI	GCAGC	3 cut(s)	280, 427, 853
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	740, 791
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	12, 739
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	99, 229, 619
Bsp1720I	GCTNAGC	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	2 cut(s)	406, 903
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	5 cut(s)	147, 335, 418, 532, 876
BspPI	GGATC	2 cut(s)	94, 614
BsrDI	GCAATG	1 cut(s)	668
BsrI	ACTGG	4 cut(s)	450, 509, 623, 674
BssECI	CCNNGG	4 cut(s)	87, 112, 135, 190
BssMI	GATC	3 cut(s)	99, 229, 619
BssT1I	CCWWGG	3 cut(s)	112, 135, 190
Bst4CI	ACNGT	2 cut(s)	559, 708
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	6 cut(s)	155, 322, 426, 482, 519, 863
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	610
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	758
BstKTI	GATC	3 cut(s)	102, 232, 622
BstMAI	GTCTC	2 cut(s)	12, 739
BstMBI	GATC	3 cut(s)	99, 229, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	529, 679, 921
BstSFI	CTRYAG	2 cut(s)	558, 589
BstV1I	GCAGC	3 cut(s)	280, 427, 853
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	610
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	4 cut(s)	423, 435, 443, 681
Cac8I	GCNNGC	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	1 cut(s)	758
Cfr13I	GGNCC	2 cut(s)	116, 373
CseI	GACGC	2 cut(s)	65, 327
Csp6I	GTAC	1 cut(s)	888
CviAII	CATG	2 cut(s)	113, 950
CviQI	GTAC	1 cut(s)	888
DdeI	CTNAG	6 cut(s)	155, 322, 426, 482, 519, 863
DpnI	GATC	3 cut(s)	101, 231, 621
DpnII	GATC	3 cut(s)	99, 229, 619
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
Eco130I	CCWWGG	3 cut(s)	112, 135, 190
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	270
EcoT14I	CCWWGG	3 cut(s)	112, 135, 190
ErhI	CCWWGG	3 cut(s)	112, 135, 190
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	116, 953
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	112, 949
FauNDI	CATATG	1 cut(s)	805
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	269, 441, 842
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	3 cut(s)	269, 441, 842
GlaI	GCGC	1 cut(s)	757
GluI	GCNGC	3 cut(s)	269, 441, 842
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	2 cut(s)	740, 791
HgaI	GACGC	2 cut(s)	65, 327
HhaI	GCGC	1 cut(s)	758
Hin1II	CATG	2 cut(s)	116, 953
Hin6I	GCGC	1 cut(s)	756
HinP1I	GCGC	1 cut(s)	756
HincII	GTYRAC	2 cut(s)	477, 811
HindII	GTYRAC	2 cut(s)	477, 811
HindIII	AAGCTT	2 cut(s)	452, 530
HinfI	GANTC	4 cut(s)	23, 416, 463, 774
HpaII	CCGG	2 cut(s)	740, 791
HphI	GGTGA	4 cut(s)	22, 625, 641, 740
Hpy166II	GTNNAC	5 cut(s)	184, 298, 477, 562, 811
Hpy188I	TCNGA	2 cut(s)	88, 885
Hpy188III	TCNNGA	6 cut(s)	15, 278, 315, 460, 637, 713
Hpy8I	GTNNAC	5 cut(s)	184, 298, 477, 562, 811
Hpy99I	CGWCG	2 cut(s)	38, 59
HpyAV	CCTTC	3 cut(s)	424, 595, 923
HpyCH4III	ACNGT	2 cut(s)	559, 708
HpyCH4IV	ACGT	3 cut(s)	387, 547, 890
HpyCH4V	TGCA	4 cut(s)	443, 574, 841, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	529, 679, 921
HpyF3I	CTNAG	6 cut(s)	155, 322, 426, 482, 519, 863
HpySE526I	ACGT	3 cut(s)	387, 547, 890
Hsp92II	CATG	2 cut(s)	116, 953
HspAI	GCGC	1 cut(s)	756
Kzo9I	GATC	3 cut(s)	99, 229, 619
LmnI	GCTCC	2 cut(s)	64, 793
Lsp1109I	GCAGC	3 cut(s)	280, 427, 853
LweI	GCATC	2 cut(s)	132, 669
MaeII	ACGT	3 cut(s)	387, 547, 890
MaeIII	GTNAC	3 cut(s)	28, 613, 653
MalI	GATC	3 cut(s)	101, 231, 621
MboI	GATC	3 cut(s)	99, 229, 619
MboII	GAAGA	5 cut(s)	109, 263, 412, 421, 886
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	6 cut(s)	7, 70, 205, 468, 509, 848
MlyI	GAGTC	2 cut(s)	17, 768
MmeI	TCCRAC	3 cut(s)	72, 176, 578
MseI	TTAA	1 cut(s)	783
MspI	CCGG	2 cut(s)	740, 791
MwoI	GCNNNNNNNGC	3 cut(s)	529, 679, 921
NcoI	CCATGG	1 cut(s)	112
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	3 cut(s)	99, 229, 619
NlaIII	CATG	2 cut(s)	116, 953
NmuCI	GTSAC	2 cut(s)	28, 613
PfeI	GAWTC	2 cut(s)	416, 463
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	270, 442, 843
PleI	GAGTC	2 cut(s)	17, 768
PpsI	GAGTC	2 cut(s)	17, 768
PspPI	GGNCC	2 cut(s)	116, 373
PsrI	GAACNNNNNNTAC	2 cut(s)	753, 785
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	1 cut(s)	889
RsaNI	GTAC	1 cut(s)	888
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	3 cut(s)	269, 441, 842
Sau3AI	GATC	3 cut(s)	99, 229, 619
Sau96I	GGNCC	2 cut(s)	116, 373
SchI	GAGTC	2 cut(s)	17, 768
SfaNI	GCATC	2 cut(s)	132, 669
SfcI	CTRYAG	2 cut(s)	558, 589
SinI	GGWCC	1 cut(s)	373
Sse9I	AATT	6 cut(s)	7, 70, 205, 468, 509, 848
SsiI	CCGC	2 cut(s)	406, 903
StyI	CCWWGG	3 cut(s)	112, 135, 190
TaaI	ACNGT	2 cut(s)	559, 708
TaiI	ACGT	3 cut(s)	390, 550, 893
TaqI	TCGA	3 cut(s)	14, 585, 816
TasI	AATT	6 cut(s)	7, 70, 205, 468, 509, 848
TfiI	GAWTC	2 cut(s)	416, 463
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	4 cut(s)	430, 442, 450, 681
TseFI	GTSAC	2 cut(s)	28, 613
TseI	GCWGC	3 cut(s)	268, 440, 841
Tsp45I	GTSAC	2 cut(s)	28, 613
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	2 cut(s)	16, 462
TspRI	CASTG	4 cut(s)	430, 442, 450, 681
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	3 cut(s)	7, 468, 509
XmiI	GTMKAC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.