Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007859

Physical Location & Seq

Genomic Coordinates Reverse (-)

17670481 .. 17672353

Gene Structure 1873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGAACATGGACGATTTCTCACCGGAGAATGTTTTAGCACCACCACCACCACCTCCTCCAATGAAGAAGTCAACGGATCTGTTTATGCAAAGAAGCAATAGCTTTGTTTCTAAAGCTACGAGAGATTCATGGGATCGTATGTTCGACGAAGCTCATGGAGCTGATGTTTTGATTCATACTGATGATAATGGTTTGATTTACGCACATTCTAATGTCATCGGAATGGCTTCAGATGTAATCAGAGGAATGATGAAGCAACATAAGAGAAAATCTCATCGTAAATCGATTTCAATCCTCGGTGTTCCTCACCACGCTCTTCGAGTTTTCATTCGATTCTTATACTCTTCTTGCTATGAGAAACAAGATATGGAGGATTTTGCAATACATCTACTTGTGTTATCACATGTCTACGTTGTACCGCATTTGAAGCGAGTCTGCGAATCAGAATTCGAAAGTAGTTTGCTCAACAAAGAGAATGTGATTGATGTGTTTCAGCTAGCTCTTCTATGTGATGCTCCTCGTCTCGGTCTTCTCTGTCATAGAATGATTCTAAACAACTTTGAAGAAGTTTCTACTTCTGAAGGATGGCAAGCAATGAAAGAGAGCCATCCTAGACTTCAAAAAGAGCTTTTACGCTCTGTCGCTTACGAGCTTAATAGCTTGAAGCAAAGAAACAGGAAACAGAAGGAGATACAGACTTATACACAGCTCTATGAAGCAATGGAGGCTTTTGTTCATATATGTAGAGATGGATGCAGAGAAATAGGTCCAACAAAGACCGAAACCCCGCATATGTCATGCGGATTTCAAGCGTGTAATGGTTTAGAGCAGCTATTGAAACATTTGGCGGGATGCAAACTAAGATCAATCCCTGGTGGTTGTAGCCGTTGCAAGAGAATGTGGCAGCTTCTTGAGCTTCATTCGCGCATTTGCGTAGACTCGGAACAATGCAAAGTCCCTCTTTGCAGTAGTTTGAAAGAGAGGATGAAGACACAGAGCAGGAAAGATGAGAAAAGATGGAAACTTTTGGTGAGGAATGTTTTGAGCACCAAGAGAATTGGAGGATCTCCATTCTTTTTGCAAGCAATTGATGTTACTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0016020 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB zf-TAZ

Protein Analysis

368

Amino Acids

42.31

Weight (kDa)

8.85

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	47 - 153	3.1e-10	BTB/POZ domain
zf-TAZ	PF02135	240 - 323	5.7e-11	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37610 AT5G67480 AT5G67480 AT5G67480
fragaria_vesca	FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510
malus_domestica	MD02G1184400.v1.1
prunus_persica	Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1
pyrus_communis	pycom02g14950
rosa_chinensis	RchiOBHm_Chr2g0107741
rosa_laevigata	RLG00000017612
rosa_multiflora	Rmu_sc0009624.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135980
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197300 Rh2BG209600 Rh2CG201800 Rh2DG205200
rosa_wichuraiana	Rw2G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	411, 939
AccII	CGCG	1 cut(s)	928
AciI	CCGC	4 cut(s)	422, 791, 804, 851
AclWI	GGATC	3 cut(s)	87, 144, 1075
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	2 cut(s)	216, 603
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	8 cut(s)	294, 430, 566, 623, 667, 812, 841, 979
AjnI	CCWGG	1 cut(s)	874
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
Alw21I	GWGCWC	1 cut(s)	1052
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	3 cut(s)	87, 144, 1075
ApeKI	GCWGC	2 cut(s)	832, 907
ApoI	RAATTY	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	930
AspS9I	GGNCC	1 cut(s)	770
AsuHPI	GGTGA	3 cut(s)	15, 302, 1045
AsuII	TTCGAA	1 cut(s)	453
AsuNHI	GCTAGC	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	770
BbsI	GAAGAC	2 cut(s)	524, 998
Bbv12I	GWGCWC	1 cut(s)	1052
BbvI	GCAGC	2 cut(s)	844, 919
BccI	CCATC	4 cut(s)	582, 618, 746, 1014
BceAI	ACGGC	1 cut(s)	873
BciT130I	CCWGG	1 cut(s)	876
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	2 cut(s)	500, 615
BisI	GCNGC	2 cut(s)	833, 908
BlsI	GCNGC	2 cut(s)	834, 909
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	876
BmsI	GCATC	3 cut(s)	505, 746, 845
BmtI	GCTAGC	1 cut(s)	503
BpiI	GAAGAC	2 cut(s)	524, 998
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
Bpu14I	TTCGAA	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	935
Bsa29I	ATCGAT	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	298, 874
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse3DI	GCAATG	2 cut(s)	603, 729
Bse8I	GATNNNNATC	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	876
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	298, 874
BseGI	GGATG	5 cut(s)	593, 610, 761, 860, 993
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	2 cut(s)	603, 729
BseRI	GAGGAG	2 cut(s)	48, 510
BseXI	GCAGC	2 cut(s)	844, 919
Bsh1236I	CGCG	1 cut(s)	928
BshVI	ATCGAT	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	1052
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	944
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	530
BsmBI	CGTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	944
Bsp119I	TTCGAA	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	1052
Bsp143I	GATC	4 cut(s)	79, 136, 866, 1067
BspACI	CCGC	4 cut(s)	422, 791, 804, 851
BspDI	ATCGAT	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	928
BspOI	GCTAGC	1 cut(s)	503
BspPI	GGATC	3 cut(s)	87, 144, 1075
BspQI	GCTCTTC	2 cut(s)	324, 510
BspT104I	TTCGAA	1 cut(s)	453
BsrDI	GCAATG	2 cut(s)	603, 729
BssECI	CCNNGG	2 cut(s)	298, 874
BssMI	GATC	4 cut(s)	79, 136, 866, 1067
Bst2UI	CCWGG	1 cut(s)	876
Bst6I	CTCTTC	3 cut(s)	324, 352, 510
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	3 cut(s)	501, 594, 1086
BstDEI	CTNAG	1 cut(s)	863
BstF5I	GGATG	5 cut(s)	593, 610, 761, 860, 993
BstFNI	CGCG	1 cut(s)	928
BstHHI	GCGC	1 cut(s)	930
BstKTI	GATC	4 cut(s)	82, 139, 869, 1070
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	4 cut(s)	79, 136, 866, 1067
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 430, 728, 916, 925
BstNI	CCWGG	1 cut(s)	876
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	874
BstUI	CGCG	1 cut(s)	928
BstV1I	GCAGC	2 cut(s)	844, 919
BstV2I	GAAGAC	2 cut(s)	524, 998
BstX2I	RGATCY	2 cut(s)	79, 1067
BstYI	RGATCY	2 cut(s)	79, 1067
Bsu15I	ATCGAT	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	287
BtsCI	GGATG	5 cut(s)	593, 610, 761, 860, 993
Cac8I	GCNNGC	3 cut(s)	501, 594, 1086
CfoI	GCGC	1 cut(s)	930
Cfr13I	GGNCC	1 cut(s)	770
ClaI	ATCGAT	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	5 cut(s)	10, 132, 158, 407, 801
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	863
DpnI	GATC	4 cut(s)	81, 138, 868, 1069
DpnII	GATC	4 cut(s)	79, 136, 866, 1067
Eam1104I	CTCTTC	3 cut(s)	324, 352, 510
EarI	CTCTTC	3 cut(s)	324, 352, 510
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	2 cut(s)	216, 603
EcoRI	GAATTC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	874
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	5 cut(s)	13, 135, 161, 410, 804
FalI	AAGNNNNNCTT	2 cut(s)	948, 980
FaqI	GGGAC	1 cut(s)	944
FatI	CATG	5 cut(s)	9, 131, 157, 406, 800
FauI	CCCGC	2 cut(s)	798, 844
FauNDI	CATATG	1 cut(s)	795
FblI	GTMKAC	2 cut(s)	411, 939
Fnu4HI	GCNGC	2 cut(s)	833, 908
FokI	GGATG	5 cut(s)	597, 600, 768, 867, 1000
Fsp4HI	GCNGC	2 cut(s)	833, 908
FspBI	CTAG	2 cut(s)	500, 615
GlaI	GCGC	1 cut(s)	929
GluI	GCNGC	2 cut(s)	833, 908
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	930
Hin1II	CATG	5 cut(s)	13, 135, 161, 410, 804
Hin6I	GCGC	1 cut(s)	928
HinP1I	GCGC	1 cut(s)	928
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	7 cut(s)	128, 175, 336, 435, 443, 550, 941
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	3 cut(s)	15, 302, 1045
Hpy166II	GTNNAC	3 cut(s)	75, 412, 940
Hpy188I	TCNGA	6 cut(s)	224, 235, 245, 448, 583, 946
Hpy188III	TCNNGA	1 cut(s)	914
Hpy8I	GTNNAC	3 cut(s)	75, 412, 940
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	578, 682
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	8 cut(s)	91, 383, 759, 858, 894, 954, 969, 1084
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 430, 728, 916, 925
HpyF3I	CTNAG	1 cut(s)	863
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	5 cut(s)	13, 135, 161, 410, 804
HspAI	GCGC	1 cut(s)	928
Kzo9I	GATC	4 cut(s)	79, 136, 866, 1067
LguI	GCTCTTC	2 cut(s)	324, 510
LmnI	GCTCC	2 cut(s)	161, 523
LpnPI	CCDG	5 cut(s)	39, 664, 861, 888, 988
Lsp1109I	GCAGC	2 cut(s)	844, 919
LweI	GCATC	3 cut(s)	505, 746, 845
MaeI	CTAG	2 cut(s)	500, 615
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	1096
MalI	GATC	4 cut(s)	81, 138, 868, 1069
MboI	GATC	4 cut(s)	79, 136, 866, 1067
MboII	GAAGA	7 cut(s)	79, 311, 339, 497, 524, 578, 1003
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	2 cut(s)	79, 1067
MhlI	GDGCHC	1 cut(s)	1052
MluCI	AATT	3 cut(s)	449, 1059, 1089
MlyI	GAGTC	2 cut(s)	444, 935
MmeI	TCCRAC	1 cut(s)	797
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	3 cut(s)	183, 213, 224
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	876
MunI	CAATTG	1 cut(s)	1089
MvaI	CCWGG	1 cut(s)	876
MvnI	CGCG	1 cut(s)	928
MwoI	GCNNNNNNNGC	5 cut(s)	161, 430, 728, 916, 925
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	4 cut(s)	79, 136, 866, 1067
NheI	GCTAGC	1 cut(s)	499
NlaIII	CATG	5 cut(s)	13, 135, 161, 410, 804
NspI	RCATGY	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	453
PciI	ACATGT	1 cut(s)	406
PciSI	GCTCTTC	2 cut(s)	324, 510
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	5 cut(s)	128, 175, 336, 443, 550
PkrI	GCNGC	2 cut(s)	834, 909
PleI	GAGTC	2 cut(s)	443, 935
PpsI	GAGTC	2 cut(s)	443, 935
PscI	ACATGT	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspPI	GGNCC	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	79, 1067
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	3 cut(s)	183, 213, 224
SapI	GCTCTTC	2 cut(s)	324, 510
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	2 cut(s)	833, 908
Sau3AI	GATC	4 cut(s)	79, 136, 866, 1067
Sau96I	GGNCC	1 cut(s)	770
SchI	GAGTC	2 cut(s)	444, 935
ScrFI	CCNGG	1 cut(s)	876
SduI	GDGCHC	1 cut(s)	1052
SfaNI	GCATC	3 cut(s)	505, 746, 845
SfuI	TTCGAA	1 cut(s)	453
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	3 cut(s)	183, 213, 224
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
Sse9I	AATT	3 cut(s)	449, 1059, 1089
SsiI	CCGC	4 cut(s)	422, 791, 804, 851
SspMI	CTAG	2 cut(s)	500, 615
StyD4I	CCNGG	1 cut(s)	874
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	5 cut(s)	147, 287, 322, 334, 453
TaqII	GACCGA	2 cut(s)	518, 797
TasI	AATT	3 cut(s)	449, 1059, 1089
TfiI	GAWTC	5 cut(s)	128, 175, 336, 443, 550
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TseI	GCWGC	2 cut(s)	832, 907
TspGWI	ACGGA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	2 cut(s)	411, 939
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	2 cut(s)	500, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.