Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007859

Physical Location & Seq

Genomic Coordinates Reverse (-)

10157905 .. 10162038

Gene Structure 4134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17510.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATTCCACCGTGGCCTGGTCCAGTCAAAAACAGTTTTCATAAAGGGTTCTCATCAAATGCATCACCAGTGCGGGGGTGCAACGGCGTCTGCAAGGCAAGAACAAATTTATGGGGGCGGCTGTTTGACAAAGGTTATAAAGCAGATGTTGCTATTCATACGGATGATGGTGGCATCGTCTATGCACATGCTAACCTTCTTGGAACGGCTTCTCCTGTATTGAAAGGCCTGTTGAAGCAACGAAAAGTGTCTTGTCGACTAAAAACAATCTCTATCCAAGGATTTCCATATGACGCAGTTAGAGTGTTCATTCGTTTCTTGTACTCTTCCTGCTATGAAGAAAAAGAAATGGAGGAGTTTGTTGTAGCCTTGTTGGTGCTTTCACATCTCTATGCGGTTTCTCCCTTGAAGCAAGAGTGTCAACAGAAGCTGGAAGATGGTTTGCTTACCACAGAGAATGTAGTTGATATTTTTCAACTTGCATTACTGTGTGACGCGCCTCGGCTTAGCCTCATTTGTCATCGTATGATCCTGAAGAACTTTAAAGCTGTTTCTGTCACTGAAGGATGGAAAGTTATGAAGCAGAGTCACCCAACACTAGAAAGGGACCTATTGGATTCTGCCATTGAAGAAGATAACAGTAGAAAGGAGAGAATCAGAAAGATAAATGAGAGAAAAATATATCTGCTACTATATGATGCGATGGAGGCTCTTGTGCACATATACAGAGATGGTTGTCAAACAATTGGACCATGTCATAAGGACCTTAAAGAGAACAAGGATCCTTGTAAATATATAGCCTGTAAGGGACTGGAATTGCTTGTCCGTCATTTTGCTGGTTGTAAATTGAGAGTCCCTGGTGGTTGTATCCATTGCAAGAGAATGTGGCAGCTGTTGGAGTTACACTCCCGCCTTTGTGCTGATTCCCATGTCTGTAAGGTTCCTTTGTGCAGGAACTTTAAAGAGAGAATTAGGAAACAGAGTAAGAAAGACGAGAATAGATGGAAGATGTTAGTGAAGAAGATTTTGAGAACAAAGAAAATCGCAGGAGCCCCGTTCTTGACGTCGGCAGATGTGAGCTCTTTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0016020 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB zf-TAZ

Protein Analysis

364

Amino Acids

41.43

Weight (kDa)

9.38

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	41 - 145	2.3e-10	BTB/POZ domain
zf-TAZ	PF02135	233 - 317	7.3e-10	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37610 AT5G67480 AT5G67480 AT5G67480
fragaria_vesca	FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510
malus_domestica	MD02G1184400.v1.1
prunus_persica	Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1
pyrus_communis	pycom02g14950
rosa_chinensis	RchiOBHm_Chr2g0107741
rosa_laevigata	RLG00000017612
rosa_multiflora	Rmu_sc0009624.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135980
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197300 Rh2BG209600 Rh2CG201800 Rh2DG205200
rosa_wichuraiana	Rw2G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AatII	GACGTC	1 cut(s)	1067
AccI	GTMKAC	1 cut(s)	256
AccII	CGCG	1 cut(s)	497
AciI	CCGC	4 cut(s)	73, 118, 395, 910
AclWI	GGATC	3 cut(s)	523, 776, 789
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	2 cut(s)	554, 582
AcyI	GRCGYC	2 cut(s)	87, 1064
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	17, 74
AgsI	TTSAA	5 cut(s)	223, 235, 409, 476, 629
AjnI	CCWGG	2 cut(s)	16, 856
AloI	GAACNNNNNNTCC	2 cut(s)	196, 228
AluBI	AGCT	4 cut(s)	430, 548, 892, 1080
AluI	AGCT	4 cut(s)	430, 548, 892, 1080
Alw21I	GWGCWC	2 cut(s)	720, 1082
Alw44I	GTGCAC	1 cut(s)	716
AlwI	GGATC	3 cut(s)	523, 776, 789
AlwNI	CAGNNNCTG	1 cut(s)	430
AoxI	GGCC	2 cut(s)	14, 226
ApaLI	GTGCAC	1 cut(s)	716
ApeKI	GCWGC	1 cut(s)	889
ApoI	RAATTY	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	4 cut(s)	20, 607, 749, 763
AsuHPI	GGTGA	2 cut(s)	57, 581
AvaII	GGWCC	4 cut(s)	20, 607, 749, 763
BaeGI	GKGCMC	1 cut(s)	720
BamHI	GGATCC	1 cut(s)	781
BanII	GRGCYC	2 cut(s)	1054, 1082
Bbv12I	GWGCWC	2 cut(s)	720, 1082
BbvI	GCAGC	1 cut(s)	901
BccI	CCATC	6 cut(s)	161, 431, 561, 697, 725, 996
BceAI	ACGGC	2 cut(s)	100, 222
BciT130I	CCWGG	2 cut(s)	18, 858
BciVI	GTATCC	1 cut(s)	878
BfaI	CTAG	1 cut(s)	599
BfuI	GTATCC	1 cut(s)	878
BisI	GCNGC	2 cut(s)	119, 890
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	2 cut(s)	120, 891
Bme1390I	CCNGG	2 cut(s)	18, 858
Bme18I	GGWCC	4 cut(s)	20, 607, 749, 763
BmgT120I	GGNCC	4 cut(s)	20, 607, 749, 763
BmiI	GGNNCC	4 cut(s)	608, 783, 942, 1051
BmrFI	CCNGG	2 cut(s)	18, 858
BmsI	GCATC	3 cut(s)	71, 183, 688
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
Bpu1102I	GCTNAGC	1 cut(s)	506
BsaHI	GRCGYC	2 cut(s)	87, 1064
BsaJI	CCNNGG	4 cut(s)	11, 277, 500, 856
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 74
Bse1I	ACTGG	3 cut(s)	23, 68, 816
Bse3DI	GCAATG	1 cut(s)	871
BseBI	CCWGG	2 cut(s)	18, 858
BseDI	CCNNGG	4 cut(s)	11, 277, 500, 856
BseGI	GGATG	2 cut(s)	169, 572
BseLI	CCNNNNNNNGG	2 cut(s)	17, 74
BseMI	GCAATG	1 cut(s)	871
BseNI	ACTGG	3 cut(s)	23, 68, 816
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	1 cut(s)	901
BsgI	GTGCAG	1 cut(s)	970
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	16, 228
BsiHKAI	GWGCWC	2 cut(s)	720, 1082
BslFI	GGGAC	3 cut(s)	620, 822, 839
BslI	CCNNNNNNNGG	2 cut(s)	17, 74
BsmFI	GGGAC	3 cut(s)	620, 822, 839
BsnI	GGCC	2 cut(s)	16, 228
Bsp1286I	GDGCHC	3 cut(s)	720, 1054, 1082
Bsp143I	GATC	2 cut(s)	528, 781
Bsp1720I	GCTNAGC	1 cut(s)	506
BspACI	CCGC	4 cut(s)	73, 118, 395, 910
BspANI	GGCC	2 cut(s)	16, 228
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	4 cut(s)	608, 783, 942, 1051
BspPI	GGATC	3 cut(s)	523, 776, 789
BsrDI	GCAATG	1 cut(s)	871
BsrI	ACTGG	3 cut(s)	23, 68, 816
BssECI	CCNNGG	4 cut(s)	11, 277, 500, 856
BssMI	GATC	2 cut(s)	528, 781
BssNI	GRCGYC	2 cut(s)	87, 1064
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	18, 858
Bst4CI	ACNGT	4 cut(s)	12, 35, 489, 641
Bst6I	CTCTTC	1 cut(s)	331
BstACI	GRCGYC	2 cut(s)	87, 1064
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	506
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	169, 572
BstFNI	CGCG	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	2 cut(s)	531, 784
BstMBI	GATC	2 cut(s)	528, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 707
BstNI	CCWGG	2 cut(s)	18, 858
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	16, 856
BstSLI	GKGCMC	1 cut(s)	720
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	1 cut(s)	901
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	2 cut(s)	16, 228
BtgI	CCRYGG	1 cut(s)	11
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	2 cut(s)	169, 572
BtsIMutI	CAGTG	2 cut(s)	75, 558
CaiI	CAGNNNCTG	1 cut(s)	430
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	4 cut(s)	20, 607, 749, 763
CseI	GACGC	3 cut(s)	76, 302, 503
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	188, 753, 929
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	2 cut(s)	530, 783
DpnII	GATC	2 cut(s)	528, 781
DraI	TTTAAA	2 cut(s)	544, 961
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	1080
Eco130I	CCWWGG	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	1054, 1082
Eco47I	GGWCC	4 cut(s)	20, 607, 749, 763
Eco53kI	GAGCTC	1 cut(s)	1080
Eco57I	CTGAAG	2 cut(s)	554, 582
EcoICRI	GAGCTC	1 cut(s)	1080
EcoO109I	RGGNCCY	2 cut(s)	607, 763
EcoRII	CCWGG	2 cut(s)	16, 856
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	64
EcoT38I	GRGCYC	2 cut(s)	1054, 1082
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	3 cut(s)	191, 756, 932
FaqI	GGGAC	3 cut(s)	620, 822, 839
FatI	CATG	3 cut(s)	187, 752, 928
FauI	CCCGC	2 cut(s)	66, 917
FauNDI	CATATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	119, 890
FokI	GGATG	2 cut(s)	176, 579
FriOI	GRGCYC	2 cut(s)	1054, 1082
Fsp4HI	GCNGC	2 cut(s)	119, 890
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	2 cut(s)	119, 890
HaeIII	GGCC	2 cut(s)	16, 228
HgaI	GACGC	3 cut(s)	76, 302, 503
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	2 cut(s)	87, 1064
Hin1II	CATG	3 cut(s)	191, 756, 932
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	2 cut(s)	257, 422
HindII	GTYRAC	2 cut(s)	257, 422
HinfI	GANTC	6 cut(s)	4, 586, 617, 654, 852, 923
HphI	GGTGA	2 cut(s)	57, 581
Hpy166II	GTNNAC	3 cut(s)	257, 422, 718
Hpy188I	TCNGA	1 cut(s)	659
Hpy188III	TCNNGA	2 cut(s)	532, 1060
Hpy8I	GTNNAC	3 cut(s)	257, 422, 718
Hpy99I	CGWCG	1 cut(s)	1069
HpyAV	CCTTC	2 cut(s)	206, 557
HpyCH4III	ACNGT	4 cut(s)	12, 35, 489, 641
HpyCH4IV	ACGT	1 cut(s)	1064
HpyCH4V	TGCA	8 cut(s)	62, 81, 93, 185, 482, 718, 876, 951
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 707
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	1064
Hsp92I	GRCGYC	2 cut(s)	87, 1064
Hsp92II	CATG	3 cut(s)	191, 756, 932
HspAI	GCGC	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	528, 781
LmnI	GCTCC	1 cut(s)	1049
Lsp1109I	GCAGC	1 cut(s)	901
LweI	GCATC	3 cut(s)	71, 183, 688
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	1 cut(s)	1064
MaeIII	GTNAC	4 cut(s)	491, 556, 587, 900
MalI	GATC	2 cut(s)	530, 783
MboI	GATC	2 cut(s)	528, 781
MboII	GAAGA	9 cut(s)	318, 350, 446, 547, 641, 644, 1018, 1030, 1033
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	3 cut(s)	720, 1054, 1082
MluCI	AATT	5 cut(s)	106, 744, 815, 845, 969
MlyI	GAGTC	2 cut(s)	595, 861
MmeI	TCCRAC	1 cut(s)	876
MnlI	CCTC	4 cut(s)	346, 510, 521, 700
Mph1103I	ATGCAT	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	208
MseI	TTAA	3 cut(s)	543, 768, 960
MslI	CAYNNNNRTG	3 cut(s)	162, 390, 487
MspA1I	CMGCKG	1 cut(s)	892
MspR9I	CCNGG	2 cut(s)	18, 858
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	2 cut(s)	18, 858
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	149, 707
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	528, 781
NlaIII	CATG	3 cut(s)	191, 756, 932
NlaIV	GGNNCC	4 cut(s)	608, 783, 942, 1051
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	3 cut(s)	491, 556, 587
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	1 cut(s)	191
PceI	AGGCCT	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	208
PfeI	GAWTC	4 cut(s)	4, 617, 654, 923
PflFI	GACNNNGTC	1 cut(s)	753
PkrI	GCNGC	2 cut(s)	120, 891
PleI	GAGTC	2 cut(s)	594, 860
PpsI	GAGTC	2 cut(s)	594, 860
PpuMI	RGGWCCY	2 cut(s)	607, 763
PsiI	TTATAA	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	1082
Psp5II	RGGWCCY	2 cut(s)	607, 763
Psp6I	CCWGG	2 cut(s)	16, 856
PspGI	CCWGG	2 cut(s)	16, 856
PspN4I	GGNNCC	4 cut(s)	608, 783, 942, 1051
PspPI	GGNCC	4 cut(s)	20, 607, 749, 763
PspPPI	RGGWCCY	2 cut(s)	607, 763
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	781
PsyI	GACNNNGTC	1 cut(s)	753
PvuII	CAGCTG	1 cut(s)	892
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	3 cut(s)	162, 390, 487
SacI	GAGCTC	1 cut(s)	1082
SalI	GTCGAC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	543, 768, 960
SatI	GCNGC	2 cut(s)	119, 890
Sau3AI	GATC	2 cut(s)	528, 781
Sau96I	GGNCC	4 cut(s)	20, 607, 749, 763
SchI	GAGTC	2 cut(s)	595, 861
ScrFI	CCNGG	2 cut(s)	18, 858
SduI	GDGCHC	3 cut(s)	720, 1054, 1082
SfaNI	GCATC	3 cut(s)	71, 183, 688
SinI	GGWCC	4 cut(s)	20, 607, 749, 763
SmiMI	CAYNNNNRTG	3 cut(s)	162, 390, 487
Sse9I	AATT	5 cut(s)	106, 744, 815, 845, 969
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	4 cut(s)	73, 118, 395, 910
SspMI	CTAG	1 cut(s)	599
SstI	GAGCTC	1 cut(s)	1082
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	16, 856
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	4 cut(s)	12, 35, 489, 641
TaiI	ACGT	1 cut(s)	1067
TaqI	TCGA	1 cut(s)	256
TasI	AATT	5 cut(s)	106, 744, 815, 845, 969
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	4 cut(s)	4, 617, 654, 923
Tru1I	TTAA	3 cut(s)	543, 768, 960
Tru9I	TTAA	3 cut(s)	543, 768, 960
TscAI	CASTG	2 cut(s)	75, 565
TseFI	GTSAC	3 cut(s)	491, 556, 587
TseI	GCWGC	1 cut(s)	889
Tsp45I	GTSAC	3 cut(s)	491, 556, 587
TspDTI	ATGAA	5 cut(s)	29, 146, 298, 351, 593
TspGWI	ACGGA	2 cut(s)	176, 815
TspRI	CASTG	2 cut(s)	75, 565
Tth111I	GACNNNGTC	1 cut(s)	753
VneI	GTGCAC	1 cut(s)	716
VpaK11BI	GGWCC	4 cut(s)	20, 607, 749, 763
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	208
XspI	CTAG	1 cut(s)	599
ZraI	GACGTC	1 cut(s)	1065
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.