Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007859

Physical Location & Seq

Genomic Coordinates Reverse (-)

11652839 .. 11654194

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATCCTGAAGAACTTTAAAACTGTTTGTACAACTCGAGGATGGAAAACAATGAAGAAGAGTCACCCGACACTAGAAAAAGAACTCGTGGAGTCAATGATTGAAGAAGATACTAGGCAAAAGGAGAGGATCAAAAAGATGAATGAAAGAAAAATTTATATGCTCTTATACGAGGCAATGGAGGCTCTTGTGCATATATATGAAGATGGTTGTCGAACAATTGGACCATCTGATAAGGATTTTAAAGAGAACCAGGCACCTTGTAAGTATGTAGCCTGTAAGGGACTGGAATTGCTCGTTCGCCATTTTGCTGGCTGCAAGTTGAGAGTCCCAGGCGGTTGCATCCATTGCAGGAGAATGTGGCAGCTGCTGGAGTTACACTCCCGCCTTTGTTCTGGTTCCCATAACTGCAGGGTTCCTTTGTGCAGGAATTTTAAGGAGAGAATAAAGAAACAGAGCAAGAAGGACGAGATTAGGTGGAAAATGTTAGTGAAGAAGATTTTGATAACAAAGAGAATCGCCGGAGCGCCATTCGTTTCATCGGCATTTGTCAGCACTTTGTGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0016020 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB zf-TAZ

Protein Analysis

190

Amino Acids

22.18

Weight (kDa)

9.71

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	58 - 142	8.4e-12	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37610 AT5G67480 AT5G67480 AT5G67480
fragaria_vesca	FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510
malus_domestica	MD02G1184400.v1.1
prunus_persica	Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1
pyrus_communis	pycom02g14950
rosa_chinensis	RchiOBHm_Chr2g0107741
rosa_laevigata	RLG00000017612
rosa_multiflora	Rmu_sc0009624.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135980
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197300 Rh2BG209600 Rh2CG201800 Rh2DG205200
rosa_wichuraiana	Rw2G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AciI	CCGC	2 cut(s)	336, 385
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	153, 430
AcuI	CTGAAG	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	561
AfaI	GTAC	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	2 cut(s)	252, 331
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	36
ApeKI	GCWGC	3 cut(s)	315, 364, 367
ApoI	RAATTY	2 cut(s)	153, 430
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	302, 354, 376
BccI	CCATC	3 cut(s)	36, 200, 235
BciT130I	CCWGG	2 cut(s)	254, 333
BfaI	CTAG	2 cut(s)	74, 114
BfmI	CTRYAG	1 cut(s)	409
BfoI	RGCGCY	1 cut(s)	530
BisI	GCNGC	3 cut(s)	316, 365, 368
BlsI	GCNGC	3 cut(s)	317, 366, 369
Bme1390I	CCNGG	2 cut(s)	254, 333
Bme18I	GGWCC	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	3 cut(s)	258, 400, 417
BmrFI	CCNGG	2 cut(s)	254, 333
BmsI	GCATC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	2 cut(s)	183, 346
BseBI	CCWGG	2 cut(s)	254, 333
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	47, 342
BseMI	GCAATG	2 cut(s)	183, 346
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	302, 354, 376
BsgI	GTGCAG	1 cut(s)	445
BshNI	GGYRCC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	2 cut(s)	297, 314
BsmFI	GGGAC	2 cut(s)	297, 314
BsoBI	CYCGRG	1 cut(s)	36
Bsp1407I	TGTACA	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	3, 129
BspACI	CCGC	2 cut(s)	336, 385
BspLI	GGNNCC	3 cut(s)	258, 400, 417
BspMAI	CTGCAG	1 cut(s)	413
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	183, 346
BsrGI	TGTACA	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	2 cut(s)	3, 129
BssSI	CACGAG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	254, 333
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstAUI	TGTACA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	313
BstF5I	GGATG	2 cut(s)	47, 342
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	2 cut(s)	6, 132
BstMBI	GATC	2 cut(s)	3, 129
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 348
BstNI	CCWGG	2 cut(s)	254, 333
BstSCI	CCNGG	2 cut(s)	252, 331
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	302, 354, 376
BstXI	CCANNNNNNTGG	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	47, 342
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	30
CviJI	RGCY	4 cut(s)	185, 275, 315, 367
CviKI_1	RGCY	4 cut(s)	185, 275, 315, 367
CviQI	GTAC	1 cut(s)	30
DpnI	GATC	2 cut(s)	5, 131
DpnII	GATC	2 cut(s)	3, 129
DraI	TTTAAA	2 cut(s)	19, 244
DraIII	CACNNNGTG	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	252, 331
FaiI	YATR	9 cut(s)	159, 161, 169, 195, 197, 199, 201, 270, 405
FaqI	GGGAC	2 cut(s)	297, 314
FauI	CCCGC	1 cut(s)	392
Fnu4HI	GCNGC	3 cut(s)	316, 365, 368
FokI	GGATG	2 cut(s)	54, 329
Fsp4HI	GCNGC	3 cut(s)	316, 365, 368
FspBI	CTAG	2 cut(s)	74, 114
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	3 cut(s)	316, 365, 368
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	1 cut(s)	530
HapII	CCGG	1 cut(s)	522
HhaI	GCGC	1 cut(s)	529
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	4 cut(s)	61, 92, 327, 516
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	6 cut(s)	193, 318, 342, 351, 411, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 348
HspAI	GCGC	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	3, 129
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	3 cut(s)	302, 354, 376
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	2 cut(s)	74, 114
MaeIII	GTNAC	2 cut(s)	62, 375
MalI	GATC	2 cut(s)	5, 131
MboI	GATC	2 cut(s)	3, 129
MboII	GAAGA	8 cut(s)	22, 67, 70, 116, 119, 215, 505, 508
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	4 cut(s)	153, 219, 290, 430
MlyI	GAGTC	3 cut(s)	70, 101, 336
MnlI	CCTC	4 cut(s)	32, 120, 166, 175
MseI	TTAA	3 cut(s)	18, 243, 435
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	254, 333
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	2 cut(s)	254, 333
MwoI	GCNNNNNNNGC	2 cut(s)	182, 348
NdeII	GATC	2 cut(s)	3, 129
NlaIV	GGNNCC	3 cut(s)	258, 400, 417
NmuCI	GTSAC	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	516
PkrI	GCNGC	3 cut(s)	317, 366, 369
PleI	GAGTC	3 cut(s)	69, 100, 335
PpsI	GAGTC	3 cut(s)	69, 100, 335
Psp6I	CCWGG	2 cut(s)	252, 331
PspGI	CCWGG	2 cut(s)	252, 331
PspN4I	GGNNCC	3 cut(s)	258, 400, 417
PspPI	GGNCC	1 cut(s)	224
PspXI	VCTCGAGB	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	18, 243, 435
SatI	GCNGC	3 cut(s)	316, 365, 368
Sau3AI	GATC	2 cut(s)	3, 129
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	3 cut(s)	70, 101, 336
ScrFI	CCNGG	2 cut(s)	254, 333
SetI	ASST	3 cut(s)	262, 369, 479
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	409
Sfr274I	CTCGAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	4 cut(s)	153, 219, 290, 430
SsiI	CCGC	2 cut(s)	336, 385
SspMI	CTAG	2 cut(s)	74, 114
StyD4I	CCNGG	2 cut(s)	252, 331
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	37, 214
TasI	AATT	4 cut(s)	153, 219, 290, 430
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	3 cut(s)	18, 243, 435
Tru9I	TTAA	3 cut(s)	18, 243, 435
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	3 cut(s)	315, 364, 367
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	5 cut(s)	68, 155, 159, 216, 528
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	2 cut(s)	153, 430
XhoI	CTCGAG	1 cut(s)	36
XspI	CTAG	2 cut(s)	74, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.