Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007859

Physical Location & Seq

Genomic Coordinates Reverse (-)

19132019 .. 19136345

Gene Structure 4327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG205200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATTTCATGGTCACATTGTATTTGGATGCTATTTTGTCAGGGAATGGCTTCTCCTGTAATGAAAGGCCTGTTGAGGCAACCAAAAGTGTCTCGTCGTCCACGAACAATCTCTATTCAAGGATTTCCATATGACGCAGTTAGAGTGTTTATTCGTTTCTTGTACTCTTACTGCTATGAAGAAAAAGAAATGGAGGAGTTTGTTGTAGCCTTGTTGGTGCTTTCACATCTCTATGCGGTTTCTCCGCTGAAGCGAGAGTGTGAACAGAAGCTGGAAGGTGGCTTGCTTACCAAAGAGAATGTAGTTGATATTTTTCAACTTGCATTACTGTGTGACGCCCCTCGGCTTAGCCTTATTTGTCACCGTATGATGCTGAAGAACTTTAAAGCTGTTTCTGTGACTGAAGGATGGAAAGTTATGAAGCAGAGTCACCCAACACTAGAAAAGGAACTCTTGGAATCTGCAATTGAAGAAGATAACAGGAAAAAGGAGAGGATCAGAAAGATAAATGAGAGAAAAATATATCTGCTATTATATGATGCAATGGAGGCTCTTGTACACATATACAGAGATGGTTGTCAAACAATTGGACCATGCGATAAGGACTTTAAAGAGAATAAGGATCCTTGTAAATATGTCGCCTGTAAGGGACTGGAATTGCTCGTCCGTCATTTTGCTGGTTGTAAATTGAGAGTCCCTGGTGGTTGTATCCATTGCAAGAGAATGTGGCAGCTGTTGGAGTTACACTCCCGCCTTTGTGCTGATTCCCATGTCTGTAAGGTTCCTTTGTGCAGGTCTGCCTACTTCCTTTCTTCTTCCTCTTTCATTTTTTCGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0016020 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB zf-TAZ

Protein Analysis

279

Amino Acids

32.4

Weight (kDa)

8.93

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	180 - 264	1.6e-10	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37610 AT5G67480 AT5G67480 AT5G67480
fragaria_vesca	FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510
malus_domestica	MD02G1184400.v1.1
prunus_persica	Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1
pyrus_communis	pycom02g14950
rosa_chinensis	RchiOBHm_Chr2g0107741
rosa_laevigata	RLG00000017612
rosa_multiflora	Rmu_sc0009624.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135980
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197300 Rh2BG209600 Rh2CG201800 Rh2DG205200
rosa_wichuraiana	Rw2G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	783
AciI	CCGC	3 cut(s)	236, 245, 751
AclWI	GGATC	3 cut(s)	503, 617, 630
AcuI	CTGAAG	3 cut(s)	269, 395, 423
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	2 cut(s)	164, 558
AgsI	TTSAA	3 cut(s)	119, 317, 470
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	3 cut(s)	271, 389, 733
AluI	AGCT	3 cut(s)	271, 389, 733
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	3 cut(s)	503, 617, 630
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	730
Asp700I	GAANNNNTTC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	353, 422
AvaII	GGWCC	1 cut(s)	590
BamHI	GGATCC	1 cut(s)	622
BbvI	GCAGC	1 cut(s)	742
BccI	CCATC	2 cut(s)	402, 566
BciT130I	CCWGG	1 cut(s)	699
BciVI	GTATCC	1 cut(s)	719
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	783
BfuI	GTATCC	1 cut(s)	719
BisI	GCNGC	1 cut(s)	731
BlpI	GCTNAGC	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	732
Bme1390I	CCNGG	1 cut(s)	699
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	2 cut(s)	624, 783
BmrFI	CCNGG	1 cut(s)	699
BmsI	GCATC	3 cut(s)	18, 360, 529
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
Bpu1102I	GCTNAGC	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	341, 697
Bse1I	ACTGG	1 cut(s)	657
Bse3DI	GCAATG	2 cut(s)	549, 712
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	2 cut(s)	341, 697
BseGI	GGATG	2 cut(s)	33, 413
BseMI	GCAATG	2 cut(s)	549, 712
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	742
BsgI	GTGCAG	1 cut(s)	811
BshFI	GGCC	1 cut(s)	69
BslFI	GGGAC	2 cut(s)	663, 680
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	663, 680
BsnI	GGCC	1 cut(s)	69
Bsp1407I	TGTACA	1 cut(s)	556
Bsp143I	GATC	2 cut(s)	495, 622
Bsp1720I	GCTNAGC	1 cut(s)	347
BspACI	CCGC	3 cut(s)	236, 245, 751
BspANI	GGCC	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	624, 783
BspMI	ACCTGC	1 cut(s)	783
BspPI	GGATC	3 cut(s)	503, 617, 630
BsrDI	GCAATG	2 cut(s)	549, 712
BsrGI	TGTACA	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	2 cut(s)	341, 697
BssMI	GATC	2 cut(s)	495, 622
BssNI	GRCGYC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	2 cut(s)	330, 365
BstACI	GRCGYC	1 cut(s)	336
BstAUI	TGTACA	1 cut(s)	556
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	33, 413
BstKTI	GATC	2 cut(s)	498, 625
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	2 cut(s)	495, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	1 cut(s)	699
BstSCI	CCNGG	1 cut(s)	697
BstV1I	GCAGC	1 cut(s)	742
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	719
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	33, 413
BtsIMutI	CAGTG	1 cut(s)	835
BveI	ACCTGC	1 cut(s)	783
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	590
CseI	GACGC	2 cut(s)	143, 344
Csp6I	GTAC	2 cut(s)	163, 557
CviAII	CATG	3 cut(s)	9, 594, 770
CviQI	GTAC	2 cut(s)	163, 557
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	2 cut(s)	497, 624
DpnII	GATC	2 cut(s)	495, 622
DraI	TTTAAA	2 cut(s)	385, 610
Eco147I	AGGCCT	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	590
Eco57I	CTGAAG	3 cut(s)	269, 395, 423
EcoRII	CCWGG	1 cut(s)	697
FaeI	CATG	3 cut(s)	12, 597, 773
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	2 cut(s)	663, 680
FatI	CATG	3 cut(s)	8, 593, 769
FauI	CCCGC	1 cut(s)	758
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	731
FokI	GGATG	2 cut(s)	40, 420
Fsp4HI	GCNGC	1 cut(s)	731
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	2 cut(s)	143, 344
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	12, 597, 773
HinfI	GANTC	4 cut(s)	427, 458, 693, 764
HphI	GGTGA	2 cut(s)	353, 422
Hpy166II	GTNNAC	3 cut(s)	101, 263, 559
Hpy188I	TCNGA	1 cut(s)	500
Hpy8I	GTNNAC	3 cut(s)	101, 263, 559
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	269, 398
HpyCH4III	ACNGT	2 cut(s)	330, 365
HpyCH4V	TGCA	5 cut(s)	323, 464, 542, 717, 792
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	1 cut(s)	347
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	12, 597, 773
Kzo9I	GATC	2 cut(s)	495, 622
Lsp1109I	GCAGC	1 cut(s)	742
LweI	GCATC	3 cut(s)	18, 360, 529
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	6 cut(s)	12, 332, 359, 397, 428, 741
MalI	GATC	2 cut(s)	497, 624
MboI	GATC	2 cut(s)	495, 622
MboII	GAAGA	6 cut(s)	191, 388, 482, 485, 804, 807
MfeI	CAATTG	2 cut(s)	465, 585
MflI	RGATCY	1 cut(s)	622
MluCI	AATT	4 cut(s)	465, 585, 656, 686
MlyI	GAGTC	2 cut(s)	436, 702
MmeI	TCCRAC	1 cut(s)	717
MnlI	CCTC	6 cut(s)	69, 187, 351, 486, 541, 829
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	2 cut(s)	384, 609
MslI	CAYNNNNRTG	2 cut(s)	231, 328
MspA1I	CMGCKG	2 cut(s)	247, 733
MspR9I	CCNGG	1 cut(s)	699
MunI	CAATTG	2 cut(s)	465, 585
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	1 cut(s)	548
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	2 cut(s)	495, 622
NlaIII	CATG	3 cut(s)	12, 597, 773
NlaIV	GGNNCC	2 cut(s)	624, 783
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	5 cut(s)	12, 332, 359, 397, 428
PceI	AGGCCT	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	458, 764
PkrI	GCNGC	1 cut(s)	732
PleI	GAGTC	2 cut(s)	435, 701
PpsI	GAGTC	2 cut(s)	435, 701
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	2 cut(s)	624, 783
PspPI	GGNCC	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	2 cut(s)	164, 558
RsaNI	GTAC	2 cut(s)	163, 557
RseI	CAYNNNNRTG	2 cut(s)	231, 328
SaqAI	TTAA	2 cut(s)	384, 609
SatI	GCNGC	1 cut(s)	731
Sau3AI	GATC	2 cut(s)	495, 622
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	2 cut(s)	436, 702
ScrFI	CCNGG	1 cut(s)	699
SetI	ASST	6 cut(s)	273, 280, 391, 735, 783, 797
SfaNI	GCATC	3 cut(s)	18, 360, 529
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	2 cut(s)	231, 328
Sse9I	AATT	4 cut(s)	465, 585, 656, 686
SseBI	AGGCCT	1 cut(s)	69
SsiI	CCGC	3 cut(s)	236, 245, 751
SspMI	CTAG	1 cut(s)	440
StuI	AGGCCT	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	697
TaaI	ACNGT	2 cut(s)	330, 365
TasI	AATT	4 cut(s)	465, 585, 656, 686
TatI	WGTACW	2 cut(s)	162, 556
TfiI	GAWTC	2 cut(s)	458, 764
Tru1I	TTAA	2 cut(s)	384, 609
Tru9I	TTAA	2 cut(s)	384, 609
TseFI	GTSAC	5 cut(s)	12, 332, 359, 397, 428
TseI	GCWGC	1 cut(s)	730
Tsp45I	GTSAC	5 cut(s)	12, 332, 359, 397, 428
TspDTI	ATGAA	4 cut(s)	77, 192, 434, 814
TspGWI	ACGGA	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.