Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007859

Physical Location & Seq

Genomic Coordinates Reverse (-)

19108650 .. 19113093

Gene Structure 4444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTGTCAGGCGGACAACATCCACAAAAGATCAGCCACAGTTGACAACAGAGATTCTCCGATGGTTCCACCATGGCCTGGTCCAGTCAAAAACAGTTTTCATAAGGGGTTATCATCGAATGCATCACCAGTAAGGAGGTGCAACTACGTCTCCAAGGCAACAACAGATTTATGGGGGCGCCTCTTTGACGAAGGCTATAGAGCAGATGTTGCTATTCATACGGATGATGGGGGCATCGTCTATGCACATGCTAACCTTCTTGGAATGGCTTCTCCTGTAATGAAAGGCCTGTTGAGGCAACCAAAAGTGTCTCGTCGTCCACGAACAATCTCTATTCAAGGATTTCCATATGATGCAGTTAGAGTGTTTATTCGTTTCTTGTACTCTTACTGCTATGAAGAAAAAGAAATGGAGGAGTTTGTTGTAGCCTTGTTGGTGCTTTCACATCTCTATGCGGTTTCTCCGCTGAAGCGAGAGTGTGAACAGAAGCTGGAAGGTGGCTTGCTTACCAAAGAGAATGTAGTTGATATTTTTCAACTTGCATTACTGTGTGACGCCCCTCGGCTTAGCCTTATTTGTCACCGAATGATCCTGAAGAACTTTAAAGCTGTTTCTGTGACTGAAGGATGGAAAGTTATGAAGCAGAGTCACCCAACACTAGAAAAGGAACTCTTGGAATCTGCAATTGAAGAAGATAACAGGAAGAAGGAGAGGATCAGAAAGATAAATGAGAGAAAAATATATCTGCTATTATATGATGCAATGGAGGCTCTTGTCCACATATACAGAGACGGTTGTCAAACAATTGGACCATGCGATAAGGACTTTAAAGAGAATAAGGATCCTTGTAAATATGTCGCCTGTAAGGGACTGGAATTGCTCGTCCGTCATTTTGCTGGTTGTAAATTGAGAGTCCCTGGTGGTTGTATCCATTGCAAGAGAATGTGGCAGCTGTTGGAGTTACACTCCCGCCTTTGTGCTGATTCCCATGTCTGTAAGGTTCCTTTGTGCAGGTCTGCCTACTTCCTTTCTTCTTCCTCTTTCATTTTTTCGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0016020 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB zf-TAZ

Protein Analysis

353

Amino Acids

40.21

Weight (kDa)

8.96

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	61 - 165	6.6e-10	BTB/POZ domain
zf-TAZ	PF02135	253 - 337	2.4e-10	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37610 AT5G67480 AT5G67480 AT5G67480
fragaria_vesca	FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510
malus_domestica	MD02G1184400.v1.1
prunus_persica	Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1
pyrus_communis	pycom02g14950
rosa_chinensis	RchiOBHm_Chr2g0107741
rosa_laevigata	RLG00000017612
rosa_multiflora	Rmu_sc0009624.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135980
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197300 Rh2BG209600 Rh2CG201800 Rh2DG205200
rosa_wichuraiana	Rw2G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1002
AccB1I	GGYRCC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	77
AciI	CCGC	4 cut(s)	11, 455, 464, 970
AclWI	GGATC	4 cut(s)	583, 722, 836, 849
AcuI	CTGAAG	3 cut(s)	488, 614, 642
AcyI	GRCGYC	2 cut(s)	178, 555
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	338, 536, 689
AjnI	CCWGG	2 cut(s)	76, 916
AluBI	AGCT	3 cut(s)	490, 608, 952
AluI	AGCT	3 cut(s)	490, 608, 952
Alw26I	GTCTC	3 cut(s)	154, 315, 783
AlwI	GGATC	4 cut(s)	583, 722, 836, 849
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	2 cut(s)	74, 286
ApeKI	GCWGC	1 cut(s)	949
Asp700I	GAANNNNTTC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	80, 809
AsuHPI	GGTGA	3 cut(s)	117, 572, 641
AvaII	GGWCC	2 cut(s)	80, 809
BamHI	GGATCC	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	961
BccI	CCATC	3 cut(s)	55, 221, 621
BciT130I	CCWGG	2 cut(s)	78, 918
BciVI	GTATCC	1 cut(s)	938
BcoDI	GTCTC	3 cut(s)	154, 315, 783
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	1 cut(s)	196
BfoI	RGCGCY	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	1002
BfuI	GTATCC	1 cut(s)	938
BisI	GCNGC	1 cut(s)	950
BlpI	GCTNAGC	1 cut(s)	566
BlsI	GCNGC	1 cut(s)	951
Bme1390I	CCNGG	2 cut(s)	78, 918
Bme18I	GGWCC	2 cut(s)	80, 809
BmgT120I	GGNCC	2 cut(s)	80, 809
BmiI	GGNNCC	4 cut(s)	66, 179, 843, 1002
BmrFI	CCNGG	2 cut(s)	78, 918
BmsI	GCATC	4 cut(s)	131, 243, 343, 748
BoxI	GACNNNNGTC	1 cut(s)	795
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
Bpu1102I	GCTNAGC	1 cut(s)	566
BsaHI	GRCGYC	2 cut(s)	178, 555
BsaJI	CCNNGG	4 cut(s)	71, 153, 560, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	83, 128, 876
Bse3DI	GCAATG	2 cut(s)	768, 931
BseBI	CCWGG	2 cut(s)	78, 918
BseDI	CCNNGG	4 cut(s)	71, 153, 560, 916
BseGI	GGATG	3 cut(s)	18, 229, 632
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	2 cut(s)	768, 931
BseNI	ACTGG	3 cut(s)	83, 128, 876
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	961
BsgI	GTGCAG	1 cut(s)	1030
BshFI	GGCC	2 cut(s)	76, 288
BshNI	GGYRCC	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	882, 899
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	3 cut(s)	154, 315, 783
BsmBI	CGTCTC	2 cut(s)	154, 783
BsmFI	GGGAC	2 cut(s)	882, 899
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	76, 288
Bsp143I	GATC	4 cut(s)	29, 588, 714, 841
Bsp1720I	GCTNAGC	1 cut(s)	566
Bsp19I	CCATGG	1 cut(s)	71
BspACI	CCGC	4 cut(s)	11, 455, 464, 970
BspANI	GGCC	2 cut(s)	76, 288
BspLI	GGNNCC	4 cut(s)	66, 179, 843, 1002
BspMI	ACCTGC	1 cut(s)	1002
BspPI	GGATC	4 cut(s)	583, 722, 836, 849
BspT107I	GGYRCC	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	768, 931
BsrI	ACTGG	3 cut(s)	83, 128, 876
BssECI	CCNNGG	4 cut(s)	71, 153, 560, 916
BssMI	GATC	4 cut(s)	29, 588, 714, 841
BssNI	GRCGYC	2 cut(s)	178, 555
BssT1I	CCWWGG	2 cut(s)	71, 153
Bst2UI	CCWGG	2 cut(s)	78, 918
Bst4CI	ACNGT	4 cut(s)	40, 95, 549, 794
BstACI	GRCGYC	2 cut(s)	178, 555
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	1 cut(s)	566
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	18, 229, 632
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	4 cut(s)	32, 591, 717, 844
BstMAI	GTCTC	3 cut(s)	154, 315, 783
BstMBI	GATC	4 cut(s)	29, 588, 714, 841
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 767
BstNI	CCWGG	2 cut(s)	78, 918
BstNSI	RCATGY	1 cut(s)	251
BstPAI	GACNNNNGTC	1 cut(s)	795
BstSCI	CCNGG	2 cut(s)	76, 916
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	961
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
BsuI	GTATCC	1 cut(s)	938
BsuRI	GGCC	2 cut(s)	76, 288
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	18, 229, 632
BtsIMutI	CAGTG	1 cut(s)	1054
BveI	ACCTGC	1 cut(s)	1002
Cac8I	GCNNGC	1 cut(s)	503
CaiI	CAGNNNCTG	1 cut(s)	490
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	80, 809
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	4 cut(s)	72, 248, 813, 989
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	566
DinI	GGCGCC	1 cut(s)	179
DpnI	GATC	4 cut(s)	31, 590, 716, 843
DpnII	GATC	4 cut(s)	29, 588, 714, 841
DraI	TTTAAA	2 cut(s)	604, 829
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	71, 153
Eco147I	AGGCCT	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	80, 809
Eco57I	CTGAAG	3 cut(s)	488, 614, 642
EcoRII	CCWGG	2 cut(s)	76, 916
EcoT14I	CCWWGG	2 cut(s)	71, 153
EcoT22I	ATGCAT	1 cut(s)	124
EgeI	GGCGCC	1 cut(s)	179
EheI	GGCGCC	1 cut(s)	179
ErhI	CCWWGG	2 cut(s)	71, 153
Esp3I	CGTCTC	2 cut(s)	154, 783
FaeI	CATG	4 cut(s)	75, 251, 816, 992
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FaqI	GGGAC	2 cut(s)	882, 899
FatI	CATG	4 cut(s)	71, 247, 812, 988
FauI	CCCGC	1 cut(s)	977
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	950
FokI	GGATG	3 cut(s)	5, 236, 639
Fsp4HI	GCNGC	1 cut(s)	950
FspBI	CTAG	1 cut(s)	659
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	950
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	76, 288
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	2 cut(s)	178, 555
Hin1II	CATG	4 cut(s)	75, 251, 816, 992
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	5 cut(s)	53, 646, 677, 912, 983
HphI	GGTGA	3 cut(s)	117, 572, 641
Hpy166II	GTNNAC	4 cut(s)	43, 320, 482, 778
Hpy188I	TCNGA	2 cut(s)	60, 719
Hpy188III	TCNNGA	1 cut(s)	592
Hpy8I	GTNNAC	4 cut(s)	43, 320, 482, 778
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	5 cut(s)	185, 266, 488, 617, 700
HpyCH4III	ACNGT	4 cut(s)	40, 95, 549, 794
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	9 cut(s)	122, 141, 245, 356, 542, 683, 761, 936, 1011
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 767
HpyF3I	CTNAG	1 cut(s)	566
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	178, 555
Hsp92II	CATG	4 cut(s)	75, 251, 816, 992
HspAI	GCGC	1 cut(s)	178
KasI	GGCGCC	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	29, 588, 714, 841
Lsp1109I	GCAGC	1 cut(s)	961
LweI	GCATC	4 cut(s)	131, 243, 343, 748
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	5 cut(s)	551, 578, 616, 647, 960
MalI	GATC	4 cut(s)	31, 590, 716, 843
MboI	GATC	4 cut(s)	29, 588, 714, 841
MboII	GAAGA	7 cut(s)	410, 607, 701, 704, 715, 1023, 1026
MfeI	CAATTG	2 cut(s)	684, 804
MflI	RGATCY	1 cut(s)	841
MluCI	AATT	4 cut(s)	684, 804, 875, 905
Mly113I	GGCGCC	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	655, 921
MmeI	TCCRAC	1 cut(s)	936
MnlI	CCTC	8 cut(s)	129, 191, 288, 406, 570, 705, 760, 1048
Mph1103I	ATGCAT	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	2 cut(s)	603, 828
MslI	CAYNNNNRTG	3 cut(s)	222, 450, 547
MspA1I	CMGCKG	2 cut(s)	466, 952
MspR9I	CCNGG	2 cut(s)	78, 918
MunI	CAATTG	2 cut(s)	684, 804
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	2 cut(s)	78, 918
MwoI	GCNNNNNNNGC	2 cut(s)	209, 767
NarI	GGCGCC	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	71
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	4 cut(s)	29, 588, 714, 841
NlaIII	CATG	4 cut(s)	75, 251, 816, 992
NlaIV	GGNNCC	4 cut(s)	66, 179, 843, 1002
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	4 cut(s)	551, 578, 616, 647
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PctI	GAATGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	53, 677, 983
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	951
PleI	GAGTC	2 cut(s)	654, 920
PluTI	GGCGCC	1 cut(s)	181
PpsI	GAGTC	2 cut(s)	654, 920
PshAI	GACNNNNGTC	1 cut(s)	795
Psp6I	CCWGG	2 cut(s)	76, 916
PspGI	CCWGG	2 cut(s)	76, 916
PspN4I	GGNNCC	4 cut(s)	66, 179, 843, 1002
PspPI	GGNCC	2 cut(s)	80, 809
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	841
PvuII	CAGCTG	1 cut(s)	952
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	3 cut(s)	222, 450, 547
SaqAI	TTAA	2 cut(s)	603, 828
SatI	GCNGC	1 cut(s)	950
Sau3AI	GATC	4 cut(s)	29, 588, 714, 841
Sau96I	GGNCC	2 cut(s)	80, 809
SchI	GAGTC	2 cut(s)	655, 921
ScrFI	CCNGG	2 cut(s)	78, 918
SetI	ASST	9 cut(s)	140, 150, 258, 492, 499, 610, 954, 1002, 1016
SfaNI	GCATC	4 cut(s)	131, 243, 343, 748
SfcI	CTRYAG	1 cut(s)	196
SfoI	GGCGCC	1 cut(s)	179
SinI	GGWCC	2 cut(s)	80, 809
SmiMI	CAYNNNNRTG	3 cut(s)	222, 450, 547
Sse9I	AATT	4 cut(s)	684, 804, 875, 905
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	4 cut(s)	11, 455, 464, 970
SspDI	GGCGCC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	659
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	76, 916
StyI	CCWWGG	2 cut(s)	71, 153
TaaI	ACNGT	4 cut(s)	40, 95, 549, 794
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	116
TasI	AATT	4 cut(s)	684, 804, 875, 905
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	3 cut(s)	53, 677, 983
Tru1I	TTAA	2 cut(s)	603, 828
Tru9I	TTAA	2 cut(s)	603, 828
TseFI	GTSAC	4 cut(s)	551, 578, 616, 647
TseI	GCWGC	1 cut(s)	949
Tsp45I	GTSAC	4 cut(s)	551, 578, 616, 647
TspDTI	ATGAA	6 cut(s)	89, 206, 296, 411, 653, 1033
TspGWI	ACGGA	2 cut(s)	236, 875
Van91I	CCANNNNNTGG	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	80, 809
XceI	RCATGY	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	1 cut(s)	659
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.