Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007859

Physical Location & Seq

Genomic Coordinates Reverse (-)

19635457 .. 19639803

Gene Structure 4347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG209600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCTGAAGTTCTTTGATTGTTTCTCTGGTGTTTTCTGTTTAATTAGCTATGAAGAAAAAGAAATGGAGGAGTTTGTTGTAGCCTTGTTGGTGCTTTCACATCTCTATGCGGTTTCTTCGCTGAAGCGAGAGTGTGAACAGAAGCTGGAAGGTGGCTTGCTTACCAAAGAGAATGTAGTTGATATTTTTCAACTTGCATTACTGTGTGACGCCCCTCGGCTTAGCCTTATTTGTCACCGTATGATCCTGAAGAACTTTAAAGCTGTTTCTGTGACTGAAGGATGGAAAGTTATGAAGCAGAGTCACCCAACACTAGAAAAGGAACTCTTGGAATCTGCAATTGAAGAAGATAACAGGAAAAAGGAGAGGATCAGAAAGATAAATGAGAGAAAAATATATCTGCTATTATATGATGCAATGGAGGCTCTTGTACACATATACAGAGATGGTTGTCAAACAATTGGACCATGCGATAAGGACTTTAAAGAGAATAAGGATCCTTGTAAATATGTCGCCTGTAAGGGACTGGAATTGCTCGTCCGTCATTTTGCTGGTTGTAAATTGAGAGTCCCTGGTGGTTGTATCCATTGCAAGAGAATGTGGCAGCTGTTGGAGTTACACTCCCGCCTTTGTGCTGATTCCCATGTCTGTAAGGTTCCTTTGTGCAGGAACTTTAAAGAGAGAATTAGGAAACAGAGTAAGAAAGACGAGATTAGGTGGAAGATGTTAGTGAAAAAGATTTTGAGAACAAAGAAAATCGCAGGAGCGCCGTTCTTATCATCGGGACTTGTGAGCTCTTTGTGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0016020 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB zf-TAZ

Protein Analysis

269

Amino Acids

31.22

Weight (kDa)

9.13

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	138 - 222	1.1e-10	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37610 AT5G67480 AT5G67480 AT5G67480
fragaria_vesca	FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510 FvH4_1g17510
malus_domestica	MD02G1184400.v1.1
prunus_persica	Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1 Prupe.6G222100_v2.0.a1
pyrus_communis	pycom02g14950
rosa_chinensis	RchiOBHm_Chr2g0107741
rosa_laevigata	RLG00000017612
rosa_multiflora	Rmu_sc0009624.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135980
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197300 Rh2BG209600 Rh2CG201800 Rh2DG205200
rosa_wichuraiana	Rw2G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 625
AclWI	GGATC	4 cut(s)	238, 377, 491, 504
AcuI	CTGAAG	4 cut(s)	26, 143, 269, 297
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	191, 344
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	5 cut(s)	48, 145, 263, 607, 795
AluI	AGCT	5 cut(s)	48, 145, 263, 607, 795
Alw21I	GWGCWC	1 cut(s)	797
AlwI	GGATC	4 cut(s)	238, 377, 491, 504
AlwNI	CAGNNNCTG	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	227, 296
AvaII	GGWCC	1 cut(s)	464
BamHI	GGATCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	797
Bbv12I	GWGCWC	1 cut(s)	797
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	2 cut(s)	276, 440
BceAI	ACGGC	1 cut(s)	754
BciT130I	CCWGG	1 cut(s)	573
BciVI	GTATCC	1 cut(s)	593
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	770
BfuI	GTATCC	1 cut(s)	593
BisI	GCNGC	1 cut(s)	605
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	606
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	2 cut(s)	498, 657
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	403
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
Bpu1102I	GCTNAGC	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	215, 571
Bse1I	ACTGG	1 cut(s)	531
Bse3DI	GCAATG	2 cut(s)	423, 586
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	215, 571
BseGI	GGATG	1 cut(s)	287
BseMI	GCAATG	2 cut(s)	423, 586
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	797
BslFI	GGGAC	3 cut(s)	537, 554, 798
BsmFI	GGGAC	3 cut(s)	537, 554, 798
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	243, 369, 496
Bsp1720I	GCTNAGC	1 cut(s)	221
BspACI	CCGC	2 cut(s)	110, 625
BspLI	GGNNCC	2 cut(s)	498, 657
BspPI	GGATC	4 cut(s)	238, 377, 491, 504
BsrDI	GCAATG	2 cut(s)	423, 586
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	215, 571
BssMI	GATC	3 cut(s)	243, 369, 496
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	204, 239
BstACI	GRCGYC	1 cut(s)	210
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	287
BstH2I	RGCGCY	1 cut(s)	770
BstHHI	GCGC	1 cut(s)	769
BstKTI	GATC	3 cut(s)	246, 372, 499
BstMBI	GATC	3 cut(s)	243, 369, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	1 cut(s)	573
BstSCI	CCNGG	1 cut(s)	571
BstV1I	GCAGC	1 cut(s)	616
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	158
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	2 cut(s)	468, 644
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	3 cut(s)	245, 371, 498
DpnII	GATC	3 cut(s)	243, 369, 496
DraI	TTTAAA	3 cut(s)	259, 484, 676
Ecl136II	GAGCTC	1 cut(s)	795
Eco24I	GRGCYC	1 cut(s)	797
Eco47I	GGWCC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	795
Eco57I	CTGAAG	4 cut(s)	26, 143, 269, 297
EcoICRI	GAGCTC	1 cut(s)	795
EcoRII	CCWGG	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	797
FaeI	CATG	2 cut(s)	471, 647
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	3 cut(s)	537, 554, 798
FatI	CATG	2 cut(s)	467, 643
FauI	CCCGC	1 cut(s)	632
Fnu4HI	GCNGC	1 cut(s)	605
FokI	GGATG	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	1 cut(s)	605
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	768
GluI	GCNGC	1 cut(s)	605
HaeII	RGCGCY	1 cut(s)	770
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	769
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	471, 647
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HinfI	GANTC	4 cut(s)	301, 332, 567, 638
HphI	GGTGA	2 cut(s)	227, 296
Hpy166II	GTNNAC	2 cut(s)	137, 433
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	2 cut(s)	247, 783
Hpy8I	GTNNAC	2 cut(s)	137, 433
HpyAV	CCTTC	2 cut(s)	143, 272
HpyCH4III	ACNGT	2 cut(s)	204, 239
HpyCH4V	TGCA	5 cut(s)	197, 338, 416, 591, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	471, 647
HspAI	GCGC	1 cut(s)	767
Kzo9I	GATC	3 cut(s)	243, 369, 496
LmnI	GCTCC	1 cut(s)	764
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	5 cut(s)	206, 233, 271, 302, 615
MalI	GATC	3 cut(s)	245, 371, 498
MboI	GATC	3 cut(s)	243, 369, 496
MboII	GAAGA	6 cut(s)	65, 108, 262, 356, 359, 733
MfeI	CAATTG	2 cut(s)	339, 459
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	797
MluCI	AATT	6 cut(s)	42, 339, 459, 530, 560, 684
MlyI	GAGTC	2 cut(s)	310, 576
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	4 cut(s)	61, 225, 360, 415
MseI	TTAA	4 cut(s)	41, 258, 483, 675
MslI	CAYNNNNRTG	2 cut(s)	105, 202
MspA1I	CMGCKG	1 cut(s)	607
MspR9I	CCNGG	1 cut(s)	573
MunI	CAATTG	2 cut(s)	339, 459
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	1 cut(s)	422
NdeII	GATC	3 cut(s)	243, 369, 496
NlaIII	CATG	2 cut(s)	471, 647
NlaIV	GGNNCC	2 cut(s)	498, 657
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	4 cut(s)	206, 233, 271, 302
PfeI	GAWTC	2 cut(s)	332, 638
PkrI	GCNGC	1 cut(s)	606
PleI	GAGTC	2 cut(s)	309, 575
PpsI	GAGTC	2 cut(s)	309, 575
Psp124BI	GAGCTC	1 cut(s)	797
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	2 cut(s)	498, 657
PspPI	GGNCC	1 cut(s)	464
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	2 cut(s)	105, 202
SacI	GAGCTC	1 cut(s)	797
SaqAI	TTAA	4 cut(s)	41, 258, 483, 675
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	3 cut(s)	243, 369, 496
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	2 cut(s)	310, 576
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	1 cut(s)	797
SetI	ASST	8 cut(s)	50, 147, 154, 265, 609, 657, 719, 797
SfaNI	GCATC	1 cut(s)	403
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	2 cut(s)	105, 202
Sse9I	AATT	6 cut(s)	42, 339, 459, 530, 560, 684
SsiI	CCGC	2 cut(s)	110, 625
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	797
StyD4I	CCNGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	204, 239
TasI	AATT	6 cut(s)	42, 339, 459, 530, 560, 684
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	2 cut(s)	332, 638
Tru1I	TTAA	4 cut(s)	41, 258, 483, 675
Tru9I	TTAA	4 cut(s)	41, 258, 483, 675
TseFI	GTSAC	4 cut(s)	206, 233, 271, 302
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	4 cut(s)	206, 233, 271, 302
TspDTI	ATGAA	2 cut(s)	66, 308
TspGWI	ACGGA	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	464
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.