Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38010 |
| fragaria_vesca | FvH4_7g28780 |
| malus_domestica | MD01G1194200.v1.1 |
| prunus_persica | Prupe.2G288100_v2.0.a1 |
| pyrus_communis | pycom01g20450 pycom07g24000 |
| rosa_chinensis | RchiOBHm_Chr1g0376341 |
| rosa_laevigata | RLG00000026610 |
| rosa_multiflora | Rmu_sc0005594.1_g000021 Rmu_sc0016074.1_g000004 Rmu_sc0028960.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00282190 |
| rosa_rugosa | Rorug01G0395700 |
| rosa_samantha | Rh1BG370800 Rh1CG383600 |
| rosa_wichuraiana | Rw1G036110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 536 |
| AccII | CGCG | 2 cut(s) | 60, 1235 |
| AciI | CCGC | 4 cut(s) | 153, 646, 1002, 1235 |
| AclWI | GGATC | 3 cut(s) | 371, 975, 1648 |
| AfaI | GTAC | 1 cut(s) | 1428 |
| AflIII | ACRYGT | 1 cut(s) | 315 |
| AgsI | TTSAA | 6 cut(s) | 67, 588, 1093, 1169, 1187, 1526 |
| AjnI | CCWGG | 2 cut(s) | 1218, 1636 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 966, 998 |
| Alw21I | GWGCWC | 1 cut(s) | 212 |
| Alw26I | GTCTC | 2 cut(s) | 640, 713 |
| AlwI | GGATC | 3 cut(s) | 371, 975, 1648 |
| ApeKI | GCWGC | 2 cut(s) | 48, 1565 |
| AseI | ATTAAT | 1 cut(s) | 1475 |
| AsuHPI | GGTGA | 3 cut(s) | 300, 506, 800 |
| AsuNHI | GCTAGC | 1 cut(s) | 950 |
| BanII | GRGCYC | 1 cut(s) | 212 |
| BauI | CACGAG | 2 cut(s) | 93, 547 |
| BbsI | GAAGAC | 1 cut(s) | 888 |
| Bbv12I | GWGCWC | 1 cut(s) | 212 |
| BbvI | GCAGC | 2 cut(s) | 60, 1552 |
| BccI | CCATC | 5 cut(s) | 397, 586, 908, 972, 1572 |
| BciT130I | CCWGG | 2 cut(s) | 1220, 1638 |
| BciVI | GTATCC | 3 cut(s) | 203, 571, 1012 |
| BclI | TGATCA | 2 cut(s) | 36, 708 |
| BcoDI | GTCTC | 2 cut(s) | 640, 713 |
| BfaI | CTAG | 3 cut(s) | 951, 1202, 1331 |
| BfuI | GTATCC | 3 cut(s) | 203, 571, 1012 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 916 |
| BglII | AGATCT | 1 cut(s) | 854 |
| BisI | GCNGC | 3 cut(s) | 49, 1236, 1566 |
| BlsI | GCNGC | 3 cut(s) | 50, 1237, 1567 |
| Bme1390I | CCNGG | 2 cut(s) | 1220, 1638 |
| BmiI | GGNNCC | 1 cut(s) | 1635 |
| BmrFI | CCNGG | 2 cut(s) | 1220, 1638 |
| BmrI | ACTGGG | 2 cut(s) | 537, 564 |
| BmsI | GCATC | 6 cut(s) | 35, 173, 710, 760, 876, 1334 |
| BmtI | GCTAGC | 1 cut(s) | 954 |
| BmuI | ACTGGG | 2 cut(s) | 537, 564 |
| BpiI | GAAGAC | 1 cut(s) | 888 |
| BpmI | CTGGAG | 1 cut(s) | 315 |
| Bpu10I | CCTNAGC | 2 cut(s) | 955, 1326 |
| BpuEI | CTTGAG | 1 cut(s) | 622 |
| BsaAI | YACGTR | 2 cut(s) | 618, 1430 |
| BsaI | GGTCTC | 1 cut(s) | 640 |
| BsaJI | CCNNGG | 2 cut(s) | 679, 1153 |
| BsaWI | WCCGGW | 2 cut(s) | 310, 1420 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 313, 343 |
| Bse118I | RCCGGY | 1 cut(s) | 1411 |
| Bse1I | ACTGG | 5 cut(s) | 332, 532, 544, 559, 727 |
| Bse3DI | GCAATG | 1 cut(s) | 1413 |
| BseBI | CCWGG | 2 cut(s) | 1220, 1638 |
| BseDI | CCNNGG | 2 cut(s) | 679, 1153 |
| BseGI | GGATG | 4 cut(s) | 601, 1349, 1429, 1588 |
| BseMI | GCAATG | 1 cut(s) | 1413 |
| BseNI | ACTGG | 5 cut(s) | 332, 532, 544, 559, 727 |
| BseXI | GCAGC | 2 cut(s) | 60, 1552 |
| Bsh1236I | CGCG | 2 cut(s) | 60, 1235 |
| BsiHKAI | GWGCWC | 1 cut(s) | 212 |
| BsiSI | CCGG | 4 cut(s) | 11, 311, 1412, 1421 |
| BslFI | GGGAC | 1 cut(s) | 1483 |
| BsmAI | GTCTC | 2 cut(s) | 640, 713 |
| BsmFI | GGGAC | 1 cut(s) | 1483 |
| BsmI | GAATGC | 2 cut(s) | 481, 1132 |
| Bso31I | GGTCTC | 1 cut(s) | 640 |
| Bsp1286I | GDGCHC | 1 cut(s) | 212 |
| Bsp143I | GATC | 8 cut(s) | 36, 97, 363, 687, 708, 854, 967, 1640 |
| Bsp19I | CCATGG | 2 cut(s) | 679, 1153 |
| BspACI | CCGC | 4 cut(s) | 153, 646, 1002, 1235 |
| BspFNI | CGCG | 2 cut(s) | 60, 1235 |
| BspHI | TCATGA | 1 cut(s) | 985 |
| BspLI | GGNNCC | 1 cut(s) | 1635 |
| BspOI | GCTAGC | 1 cut(s) | 954 |
| BspPI | GGATC | 3 cut(s) | 371, 975, 1648 |
| BspTNI | GGTCTC | 1 cut(s) | 640 |
| BsrDI | GCAATG | 1 cut(s) | 1413 |
| BsrFI | RCCGGY | 1 cut(s) | 1411 |
| BsrI | ACTGG | 5 cut(s) | 332, 532, 544, 559, 727 |
| BssAI | RCCGGY | 1 cut(s) | 1411 |
| BssECI | CCNNGG | 2 cut(s) | 679, 1153 |
| BssMI | GATC | 8 cut(s) | 36, 97, 363, 687, 708, 854, 967, 1640 |
| BssSI | CACGAG | 2 cut(s) | 93, 547 |
| BssT1I | CCWWGG | 2 cut(s) | 679, 1153 |
| Bst2BI | CACGAG | 2 cut(s) | 93, 547 |
| Bst2UI | CCWGG | 2 cut(s) | 1220, 1638 |
| Bst4CI | ACNGT | 2 cut(s) | 191, 848 |
| Bst6I | CTCTTC | 1 cut(s) | 60 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 161 |
| BstBAI | YACGTR | 2 cut(s) | 618, 1430 |
| BstC8I | GCNNGC | 1 cut(s) | 952 |
| BstDEI | CTNAG | 6 cut(s) | 715, 858, 955, 1175, 1326, 1448 |
| BstDSI | CCRYGG | 2 cut(s) | 679, 1153 |
| BstF5I | GGATG | 4 cut(s) | 601, 1349, 1429, 1588 |
| BstFNI | CGCG | 2 cut(s) | 60, 1235 |
| BstKTI | GATC | 8 cut(s) | 39, 100, 366, 690, 711, 857, 970, 1643 |
| BstMAI | GTCTC | 2 cut(s) | 640, 713 |
| BstMBI | GATC | 8 cut(s) | 36, 97, 363, 687, 708, 854, 967, 1640 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 48, 57, 161, 436, 916, 1244 |
| BstNI | CCWGG | 2 cut(s) | 1220, 1638 |
| BstNSI | RCATGY | 2 cut(s) | 319, 483 |
| BstSCI | CCNGG | 2 cut(s) | 1218, 1636 |
| BstSNI | TACGTA | 2 cut(s) | 618, 1430 |
| BstUI | CGCG | 2 cut(s) | 60, 1235 |
| BstV1I | GCAGC | 2 cut(s) | 60, 1552 |
| BstV2I | GAAGAC | 1 cut(s) | 888 |
| BstX2I | RGATCY | 1 cut(s) | 854 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1160 |
| BstYI | RGATCY | 1 cut(s) | 854 |
| BsuI | GTATCC | 3 cut(s) | 203, 571, 1012 |
| BtgI | CCRYGG | 2 cut(s) | 679, 1153 |
| BtgZI | GCGATG | 1 cut(s) | 788 |
| BtsCI | GGATG | 4 cut(s) | 601, 1349, 1429, 1588 |
| BtsIMutI | CAGTG | 1 cut(s) | 844 |
| Cac8I | GCNNGC | 1 cut(s) | 952 |
| CciI | TCATGA | 1 cut(s) | 985 |
| Cfr10I | RCCGGY | 1 cut(s) | 1411 |
| CsiI | ACCWGGT | 1 cut(s) | 1218 |
| Csp6I | GTAC | 1 cut(s) | 1427 |
| CviAII | CATG | 8 cut(s) | 316, 386, 480, 680, 986, 1154, 1160, 1348 |
| CviQI | GTAC | 1 cut(s) | 1427 |
| DdeI | CTNAG | 6 cut(s) | 715, 858, 955, 1175, 1326, 1448 |
| DpnI | GATC | 8 cut(s) | 38, 99, 365, 689, 710, 856, 969, 1642 |
| DpnII | GATC | 8 cut(s) | 36, 97, 363, 687, 708, 854, 967, 1640 |
| Eam1104I | CTCTTC | 1 cut(s) | 60 |
| EarI | CTCTTC | 1 cut(s) | 60 |
| Ecl136II | GAGCTC | 1 cut(s) | 210 |
| Eco105I | TACGTA | 2 cut(s) | 618, 1430 |
| Eco130I | CCWWGG | 2 cut(s) | 679, 1153 |
| Eco24I | GRGCYC | 1 cut(s) | 212 |
| Eco31I | GGTCTC | 1 cut(s) | 640 |
| Eco32I | GATATC | 1 cut(s) | 421 |
| Eco53kI | GAGCTC | 1 cut(s) | 210 |
| EcoICRI | GAGCTC | 1 cut(s) | 210 |
| EcoRII | CCWGG | 2 cut(s) | 1218, 1636 |
| EcoRV | GATATC | 1 cut(s) | 421 |
| EcoT14I | CCWWGG | 2 cut(s) | 679, 1153 |
| EcoT22I | ATGCAT | 2 cut(s) | 481, 1349 |
| EcoT38I | GRGCYC | 1 cut(s) | 212 |
| ErhI | CCWWGG | 2 cut(s) | 679, 1153 |
| FaeI | CATG | 8 cut(s) | 319, 389, 483, 683, 989, 1157, 1163, 1351 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 688, 720 |
| FaqI | GGGAC | 1 cut(s) | 1483 |
| FatI | CATG | 8 cut(s) | 315, 385, 479, 679, 985, 1153, 1159, 1347 |
| FauI | CCCGC | 1 cut(s) | 639 |
| FbaI | TGATCA | 2 cut(s) | 36, 708 |
| Fnu4HI | GCNGC | 3 cut(s) | 49, 1236, 1566 |
| FokI | GGATG | 4 cut(s) | 608, 1356, 1436, 1595 |
| FriOI | GRGCYC | 1 cut(s) | 212 |
| Fsp4HI | GCNGC | 3 cut(s) | 49, 1236, 1566 |
| FspBI | CTAG | 3 cut(s) | 951, 1202, 1331 |
| GluI | GCNGC | 3 cut(s) | 49, 1236, 1566 |
| GsuI | CTGGAG | 1 cut(s) | 315 |
| HapII | CCGG | 4 cut(s) | 11, 311, 1412, 1421 |
| Hin1II | CATG | 8 cut(s) | 319, 389, 483, 683, 989, 1157, 1163, 1351 |
| HindIII | AAGCTT | 1 cut(s) | 570 |
| HinfI | GANTC | 7 cut(s) | 79, 382, 467, 675, 1008, 1169, 1596 |
| HpaII | CCGG | 4 cut(s) | 11, 311, 1412, 1421 |
| HphI | GGTGA | 3 cut(s) | 300, 506, 800 |
| Hpy166II | GTNNAC | 4 cut(s) | 321, 525, 844, 1119 |
| Hpy188I | TCNGA | 3 cut(s) | 368, 769, 885 |
| Hpy188III | TCNNGA | 8 cut(s) | 29, 95, 107, 133, 547, 986, 1600, 1627 |
| Hpy8I | GTNNAC | 4 cut(s) | 321, 525, 844, 1119 |
| HpyAV | CCTTC | 4 cut(s) | 365, 1268, 1606, 1624 |
| HpyCH4III | ACNGT | 2 cut(s) | 191, 848 |
| HpyCH4IV | ACGT | 5 cut(s) | 323, 581, 617, 893, 1429 |
| HpyCH4V | TGCA | 8 cut(s) | 48, 164, 245, 430, 479, 889, 1055, 1347 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 48, 57, 161, 436, 916, 1244 |
| HpyF3I | CTNAG | 6 cut(s) | 715, 858, 955, 1175, 1326, 1448 |
| HpySE526I | ACGT | 5 cut(s) | 323, 581, 617, 893, 1429 |
| Hsp92II | CATG | 8 cut(s) | 319, 389, 483, 683, 989, 1157, 1163, 1351 |
| Ksp22I | TGATCA | 2 cut(s) | 36, 708 |
| Kzo9I | GATC | 8 cut(s) | 36, 97, 363, 687, 708, 854, 967, 1640 |
| LmnI | GCTCC | 3 cut(s) | 959, 1439, 1480 |
| Lsp1109I | GCAGC | 2 cut(s) | 60, 1552 |
| LweI | GCATC | 6 cut(s) | 35, 173, 710, 760, 876, 1334 |
| MabI | ACCWGGT | 1 cut(s) | 1218 |
| MaeI | CTAG | 3 cut(s) | 951, 1202, 1331 |
| MaeII | ACGT | 5 cut(s) | 323, 581, 617, 893, 1429 |
| MaeIII | GTNAC | 4 cut(s) | 133, 265, 394, 1222 |
| MalI | GATC | 8 cut(s) | 38, 99, 365, 689, 710, 856, 969, 1642 |
| MboI | GATC | 8 cut(s) | 36, 97, 363, 687, 708, 854, 967, 1640 |
| MfeI | CAATTG | 2 cut(s) | 83, 761 |
| MflI | RGATCY | 1 cut(s) | 854 |
| MhlI | GDGCHC | 1 cut(s) | 212 |
| MluCI | AATT | 7 cut(s) | 32, 83, 180, 390, 607, 761, 1098 |
| MlyI | GAGTC | 1 cut(s) | 73 |
| MmeI | TCCRAC | 1 cut(s) | 774 |
| MnlI | CCTC | 5 cut(s) | 339, 543, 856, 1460, 1596 |
| Mph1103I | ATGCAT | 2 cut(s) | 481, 1349 |
| MseI | TTAA | 9 cut(s) | 116, 339, 659, 692, 998, 1197, 1209, 1416, 1475 |
| MslI | CAYNNNNRTG | 2 cut(s) | 450, 1158 |
| MspA1I | CMGCKG | 1 cut(s) | 1004 |
| MspI | CCGG | 4 cut(s) | 11, 311, 1412, 1421 |
| MspR9I | CCNGG | 2 cut(s) | 1220, 1638 |
| MunI | CAATTG | 2 cut(s) | 83, 761 |
| Mva1269I | GAATGC | 2 cut(s) | 481, 1132 |
| MvaI | CCWGG | 2 cut(s) | 1220, 1638 |
| MvnI | CGCG | 2 cut(s) | 60, 1235 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 48, 57, 161, 436, 916, 1244 |
| NcoI | CCATGG | 2 cut(s) | 679, 1153 |
| NdeII | GATC | 8 cut(s) | 36, 97, 363, 687, 708, 854, 967, 1640 |
| NheI | GCTAGC | 1 cut(s) | 950 |
| NlaIII | CATG | 8 cut(s) | 319, 389, 483, 683, 989, 1157, 1163, 1351 |
| NlaIV | GGNNCC | 1 cut(s) | 1635 |
| NmuCI | GTSAC | 2 cut(s) | 133, 265 |
| NsiI | ATGCAT | 2 cut(s) | 481, 1349 |
| NspI | RCATGY | 2 cut(s) | 319, 483 |
| PagI | TCATGA | 1 cut(s) | 985 |
| PciI | ACATGT | 1 cut(s) | 315 |
| PctI | GAATGC | 2 cut(s) | 481, 1132 |
| PfeI | GAWTC | 6 cut(s) | 382, 467, 675, 1008, 1169, 1596 |
| PfoI | TCCNGGA | 1 cut(s) | 1636 |
| PkrI | GCNGC | 3 cut(s) | 50, 1237, 1567 |
| PleI | GAGTC | 1 cut(s) | 73 |
| PpsI | GAGTC | 1 cut(s) | 73 |
| Ppu21I | YACGTR | 2 cut(s) | 618, 1430 |
| PscI | ACATGT | 1 cut(s) | 315 |
| PshBI | ATTAAT | 1 cut(s) | 1475 |
| PsiI | TTATAA | 1 cut(s) | 536 |
| Psp124BI | GAGCTC | 1 cut(s) | 212 |
| Psp6I | CCWGG | 2 cut(s) | 1218, 1636 |
| PspGI | CCWGG | 2 cut(s) | 1218, 1636 |
| PspN4I | GGNNCC | 1 cut(s) | 1635 |
| PsuI | RGATCY | 1 cut(s) | 854 |
| RsaI | GTAC | 1 cut(s) | 1428 |
| RsaNI | GTAC | 1 cut(s) | 1427 |
| RseI | CAYNNNNRTG | 2 cut(s) | 450, 1158 |
| SacI | GAGCTC | 1 cut(s) | 212 |
| SaqAI | TTAA | 9 cut(s) | 116, 339, 659, 692, 998, 1197, 1209, 1416, 1475 |
| SatI | GCNGC | 3 cut(s) | 49, 1236, 1566 |
| Sau3AI | GATC | 8 cut(s) | 36, 97, 363, 687, 708, 854, 967, 1640 |
| SchI | GAGTC | 1 cut(s) | 73 |
| ScrFI | CCNGG | 2 cut(s) | 1220, 1638 |
| SduI | GDGCHC | 1 cut(s) | 212 |
| SexAI | ACCWGGT | 1 cut(s) | 1218 |
| SfaNI | GCATC | 6 cut(s) | 35, 173, 710, 760, 876, 1334 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 450, 1158 |
| SmlI | CTYRAG | 1 cut(s) | 637 |
| SmoI | CTYRAG | 1 cut(s) | 637 |
| SnaBI | TACGTA | 2 cut(s) | 618, 1430 |
| Sse9I | AATT | 7 cut(s) | 32, 83, 180, 390, 607, 761, 1098 |
| SsiI | CCGC | 4 cut(s) | 153, 646, 1002, 1235 |
| SspI | AATATT | 1 cut(s) | 1558 |
| SspMI | CTAG | 3 cut(s) | 951, 1202, 1331 |
| SstI | GAGCTC | 1 cut(s) | 212 |
| StyD4I | CCNGG | 2 cut(s) | 1218, 1636 |
| StyI | CCWWGG | 2 cut(s) | 679, 1153 |
| TaaI | ACNGT | 2 cut(s) | 191, 848 |
| TaiI | ACGT | 5 cut(s) | 326, 584, 620, 896, 1432 |
| TaqI | TCGA | 3 cut(s) | 1071, 1269, 1628 |
| TasI | AATT | 7 cut(s) | 32, 83, 180, 390, 607, 761, 1098 |
| TauI | GCSGC | 1 cut(s) | 1238 |
| TfiI | GAWTC | 6 cut(s) | 382, 467, 675, 1008, 1169, 1596 |
| Tru1I | TTAA | 9 cut(s) | 116, 339, 659, 692, 998, 1197, 1209, 1416, 1475 |
| Tru9I | TTAA | 9 cut(s) | 116, 339, 659, 692, 998, 1197, 1209, 1416, 1475 |
| TscAI | CASTG | 1 cut(s) | 851 |
| TseFI | GTSAC | 2 cut(s) | 133, 265 |
| TseI | GCWGC | 2 cut(s) | 48, 1565 |
| Tsp45I | GTSAC | 2 cut(s) | 133, 265 |
| TspDTI | ATGAA | 7 cut(s) | 374, 434, 974, 1287, 1313, 1398, 1625 |
| TspGWI | ACGGA | 3 cut(s) | 185, 987, 1110 |
| TspRI | CASTG | 1 cut(s) | 851 |
| VspI | ATTAAT | 1 cut(s) | 1475 |
| XceI | RCATGY | 2 cut(s) | 319, 483 |
| XspI | CTAG | 3 cut(s) | 951, 1202, 1331 |
| Zsp2I | ATGCAT | 2 cut(s) | 481, 1349 |