Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015307

Physical Location & Seq

Genomic Coordinates Reverse (-)

4223330 .. 4225378

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGCATTCTCTAAAATGGGTTCTCTTGGATTTAATTGGTAAATGCAAAACCTTGAGTTGCTTCAAGCAAATCCATGCAAAGACTGTAACTTCAGGCCTGGCTTGCAATGACTTGGTTGCCACCAATGTTGTTAAGTTCTTGGGAAATTCTGTTACCCATTTCGATTACGCTTGTGATTTTCTGAAACATGTTGATTGGCGTGTGAACTCTTTCCCGTTTAACATGTTGATCTCTGGCTATGCTAATGGTGAAAATGCAGGGGAGGCGGTTTTGGTTTATAGAAGGATAGTTAGAGATGGGTTTATGCCTGATATGTTTACTATTCCGGCGGTTTTGAAATCTTGCGTTAAGTTTTTGGGGATGGGAGAGGGTAGACAGGTCCATGGTGTGGTTGTGAAGATGGGTTTTCAGTGGGATGTGTATGTTCAGAACTCGCTTGTGCATTTCTATAGTGTTTGTGGTGAGTGTGGTAATGCTTGTAAGGTGTTTGATGAAATGCGTGTGAGGGATGTGGTGTCTTGGACTGGTTTGGTGTCCGGGCATGTGAGGGCAGGGTTGTTTGGTGAGGCTGTGTCTTTGTTTTTGAGGATGGATGTGAAGCCGAATGTGGCGACTTTTGTTAGTGTGGTTGTGGCTTGTGGGCGGATGGGGTATTTGAATGTGGGGAAGGGGGTTCATGGATTGATTTTGAAGCATTCGTTGGGGATGGACTTGGTGGTGGGCAATGCTATTGTGGATATGTATGTTAAGTGTGAGAGTTTGTGTGAGGCGAAGCGGGTTTTTGATGAGCTTCCCGAAAGGGACATTGTGTCTTGGACTAGCATGATAAGTGGATACGTGCAGTCTAAACGTCCGAGGGAGTCGCTGGATTTGTTTTGCAGCATGCAGACTATGGGAATAGAGCCTGATAAGATTATACTTTCCAGTGTGCTTTCAGCTTGTGCCAGTCTTGGGGCTCTTGATTATGGTAGATGGGTCCATGAGTATATTGATCGTAAGGGTATCCAATGGGATGTACATATTGGAACAGCTATGATCGACATGTATGCCAAGTGTGGCTGTATAATTATGGCATTGCGTACTTTCAGTGAATTGTCTTGCGGGAATGTCTCTACTTGGAATGCATTGCTAGGTGGTTTAGCCATGCATGGACATGGGCACGAGGCACTCAAAAAGTTTGAAGAAATGACTAGGTCTGGCATCAGGCCAAATACAGTTACTTTTCTAGCTGTCTTGACAGCTTGCTGTCATTCTGGTTTGATTGATGAAGGCCGTGGGTACTTTCATCAGATGATAAGTACACCTCATAATCTCTCTCCAAGATTAGAACACTATGGATGCATGGTTGATCTGCTCTGTCGGGCTGGACTCCTCGATGAAGCTCAGAAATTGATAAAGACTATGCCAATGCAACCTGATGTGCTGATATTGGGAGCTCTTCTAAGTGCTTGCAAGGCCAAAAATGATGCTGAGCTCTCTCAAGAAATATTAGACCGTCTCCTGCAACTTGAGTGGCAAGATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

509

Amino Acids

56.33

Weight (kDa)

6.8

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	267 - 315	5.7e-09	PPR repeat family
PPR	PF01535	270 - 300	1.1e-07	PPR repeat
PPR_2	PF13041	369 - 417	4.4e-13	PPR repeat family
PPR_3	PF13812	369 - 415	6.2e-06	Pentatricopeptide repeat domain
PPR	PF01535	371 - 401	4.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38010
fragaria_vesca	FvH4_7g28780
malus_domestica	MD01G1194200.v1.1
prunus_persica	Prupe.2G288100_v2.0.a1
pyrus_communis	pycom01g20450 pycom07g24000
rosa_chinensis	RchiOBHm_Chr1g0376341
rosa_laevigata	RLG00000026610
rosa_multiflora	Rmu_sc0005594.1_g000021 Rmu_sc0016074.1_g000004 Rmu_sc0028960.1_g000001
rosa_roxburghii	Rroxscaffold_4G00282190
rosa_rugosa	Rorug01G0395700
rosa_samantha	Rh1BG370800 Rh1CG383600
rosa_wichuraiana	Rw1G036110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	5 cut(s)	266, 329, 643, 775, 1101
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	4 cut(s)	1017, 1081, 1280, 1300
AfiI	CCNNNNNNNGG	2 cut(s)	388, 951
AflIII	ACRYGT	3 cut(s)	187, 222, 1041
AgsI	TTSAA	5 cut(s)	64, 337, 658, 691, 1181
AhdI	GACNNNNNGTC	1 cut(s)	808
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AluBI	AGCT	8 cut(s)	790, 938, 1031, 1229, 1241, 1382, 1436, 1474
AluI	AGCT	8 cut(s)	790, 938, 1031, 1229, 1241, 1382, 1436, 1474
Alw21I	GWGCWC	2 cut(s)	1438, 1476
Alw26I	GTCTC	2 cut(s)	1114, 1502
AoxI	GGCC	4 cut(s)	94, 1205, 1270, 1455
ApeKI	GCWGC	1 cut(s)	879
ApoI	RAATTY	1 cut(s)	145
Asp700I	GAANNNNTTC	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	379, 976
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	3 cut(s)	260, 473, 575
AvaII	GGWCC	2 cut(s)	379, 976
BaeGI	GKGCMC	1 cut(s)	1161
BanII	GRGCYC	3 cut(s)	958, 1438, 1476
BauI	CACGAG	1 cut(s)	1160
Bbv12I	GWGCWC	2 cut(s)	1438, 1476
BbvI	GCAGC	1 cut(s)	891
BccI	CCATC	7 cut(s)	290, 355, 394, 583, 640, 700, 966
BceAI	ACGGC	1 cut(s)	1257
BcgI	CGANNNNNNTGC	2 cut(s)	1028, 1062
BciT130I	CCWGG	1 cut(s)	98
BciVI	GTATCC	2 cut(s)	827, 1013
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	1114, 1502
BfaI	CTAG	4 cut(s)	819, 1130, 1191, 1226
BfmI	CTRYAG	1 cut(s)	448
BfuI	GTATCC	2 cut(s)	827, 1013
BisI	GCNGC	1 cut(s)	880
BlpI	GCTNAGC	1 cut(s)	1470
BlsI	GCNGC	1 cut(s)	881
Bme1390I	CCNGG	2 cut(s)	98, 538
Bme18I	GGWCC	2 cut(s)	379, 976
BmeRI	GACNNNNNGTC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	379, 976
BmiI	GGNNCC	1 cut(s)	977
BmrFI	CCNGG	2 cut(s)	98, 538
BmsI	GCATC	3 cut(s)	1209, 1328, 1456
Bpu1102I	GCTNAGC	1 cut(s)	1470
BpuEI	CTTGAG	2 cut(s)	73, 1464
BpuMI	CCSGG	1 cut(s)	538
BsaAI	YACGTR	1 cut(s)	838
BsaJI	CCNNGG	3 cut(s)	382, 854, 1273
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 951
Bse1I	ACTGG	3 cut(s)	529, 924, 945
Bse3DI	GCAATG	4 cut(s)	112, 730, 1073, 1124
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	3 cut(s)	382, 854, 1273
BseGI	GGATG	9 cut(s)	366, 421, 514, 594, 598, 651, 711, 1018, 1343
BseLI	CCNNNNNNNGG	2 cut(s)	388, 951
BseMI	GCAATG	4 cut(s)	112, 730, 1073, 1124
BseMII	CTCAG	2 cut(s)	1397, 1461
BseNI	ACTGG	3 cut(s)	529, 924, 945
BseRI	GAGGAG	1 cut(s)	1361
BseSI	GKGCMC	1 cut(s)	1161
BseXI	GCAGC	1 cut(s)	891
BsgI	GTGCAG	1 cut(s)	860
BshFI	GGCC	4 cut(s)	96, 1207, 1272, 1457
BsiHKAI	GWGCWC	2 cut(s)	1438, 1476
BsiSI	CCGG	2 cut(s)	326, 537
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	2 cut(s)	388, 951
BsmAI	GTCTC	2 cut(s)	1114, 1502
BsmBI	CGTCTC	1 cut(s)	1502
BsmFI	GGGAC	1 cut(s)	815
BsmI	GAATGC	3 cut(s)	4, 694, 1126
BsnI	GGCC	4 cut(s)	96, 1207, 1272, 1457
Bsp1286I	GDGCHC	4 cut(s)	958, 1161, 1438, 1476
Bsp1407I	TGTACA	1 cut(s)	1015
Bsp143I	GATC	4 cut(s)	228, 991, 1035, 1348
Bsp1720I	GCTNAGC	1 cut(s)	1470
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	5 cut(s)	266, 329, 643, 775, 1101
BspANI	GGCC	4 cut(s)	96, 1207, 1272, 1457
BspCNI	CTCAG	2 cut(s)	1396, 1462
BspLI	GGNNCC	1 cut(s)	977
BspQI	GCTCTTC	1 cut(s)	1443
BsrDI	GCAATG	4 cut(s)	112, 730, 1073, 1124
BsrGI	TGTACA	1 cut(s)	1015
BsrI	ACTGG	3 cut(s)	529, 924, 945
BssECI	CCNNGG	3 cut(s)	382, 854, 1273
BssMI	GATC	4 cut(s)	228, 991, 1035, 1348
BssSI	CACGAG	1 cut(s)	1160
BssT1I	CCWWGG	1 cut(s)	382
Bst2BI	CACGAG	1 cut(s)	1160
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	3 cut(s)	85, 1216, 1496
Bst6I	CTCTTC	1 cut(s)	1443
BstAUI	TGTACA	1 cut(s)	1015
BstBAI	YACGTR	1 cut(s)	838
BstC8I	GCNNGC	4 cut(s)	103, 884, 1243, 1450
BstDEI	CTNAG	3 cut(s)	1383, 1442, 1470
BstDSI	CCRYGG	2 cut(s)	382, 1273
BstF5I	GGATG	9 cut(s)	366, 421, 514, 594, 598, 651, 711, 1018, 1343
BstKTI	GATC	4 cut(s)	231, 994, 1038, 1351
BstMAI	GTCTC	2 cut(s)	1114, 1502
BstMBI	GATC	4 cut(s)	228, 991, 1035, 1348
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 263, 1454
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	5 cut(s)	191, 226, 545, 886, 1045
BstSCI	CCNGG	2 cut(s)	96, 536
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	1 cut(s)	1161
BstV1I	GCAGC	1 cut(s)	891
BsuI	GTATCC	2 cut(s)	827, 1013
BsuRI	GGCC	4 cut(s)	96, 1207, 1272, 1457
BtgI	CCRYGG	2 cut(s)	382, 1273
BtsCI	GGATG	9 cut(s)	366, 421, 514, 594, 598, 651, 711, 1018, 1343
BtsIMutI	CAGTG	3 cut(s)	416, 931, 1093
Cac8I	GCNNGC	4 cut(s)	103, 884, 1243, 1450
Cfr13I	GGNCC	2 cut(s)	379, 976
Csp6I	GTAC	4 cut(s)	1016, 1080, 1279, 1299
CspCI	CAANNNNNGTGG	3 cut(s)	109, 144, 1493
CviQI	GTAC	4 cut(s)	1016, 1080, 1279, 1299
DdeI	CTNAG	3 cut(s)	1383, 1442, 1470
DpnI	GATC	4 cut(s)	230, 993, 1037, 1350
DpnII	GATC	4 cut(s)	228, 991, 1035, 1348
DriI	GACNNNNNGTC	1 cut(s)	808
Eam1104I	CTCTTC	1 cut(s)	1443
Eam1105I	GACNNNNNGTC	1 cut(s)	808
EarI	CTCTTC	1 cut(s)	1443
EciI	GGCGGA	1 cut(s)	658
Ecl136II	GAGCTC	2 cut(s)	1436, 1474
Eco130I	CCWWGG	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	96
Eco24I	GRGCYC	3 cut(s)	958, 1438, 1476
Eco47I	GGWCC	2 cut(s)	379, 976
Eco53kI	GAGCTC	2 cut(s)	1436, 1474
Eco57I	CTGAAG	1 cut(s)	75
EcoICRI	GAGCTC	2 cut(s)	1436, 1474
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	4 cut(s)	6, 1126, 1149, 1343
EcoT38I	GRGCYC	3 cut(s)	958, 1438, 1476
ErhI	CCWWGG	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	1502
FaqI	GGGAC	1 cut(s)	815
FauI	CCCGC	2 cut(s)	768, 1094
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	880
FokI	GGATG	9 cut(s)	373, 428, 521, 601, 605, 658, 718, 1025, 1350
FriOI	GRGCYC	3 cut(s)	958, 1438, 1476
Fsp4HI	GCNGC	1 cut(s)	880
FspBI	CTAG	4 cut(s)	819, 1130, 1191, 1226
GluI	GCNGC	1 cut(s)	880
HaeIII	GGCC	4 cut(s)	96, 1207, 1272, 1457
HapII	CCGG	2 cut(s)	326, 537
HinfI	GANTC	2 cut(s)	860, 1368
HpaII	CCGG	2 cut(s)	326, 537
HphI	GGTGA	3 cut(s)	260, 473, 575
Hpy166II	GTNNAC	4 cut(s)	205, 318, 374, 1301
Hpy188I	TCNGA	5 cut(s)	183, 429, 855, 1290, 1386
Hpy188III	TCNNGA	4 cut(s)	794, 959, 1234, 1481
Hpy8I	GTNNAC	4 cut(s)	205, 318, 374, 1301
HpyAV	CCTTC	3 cut(s)	276, 661, 1262
HpyCH4III	ACNGT	3 cut(s)	85, 1216, 1496
HpyCH4IV	ACGT	2 cut(s)	837, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 263, 1454
HpyF3I	CTNAG	3 cut(s)	1383, 1442, 1470
HpySE526I	ACGT	2 cut(s)	837, 850
Kzo9I	GATC	4 cut(s)	228, 991, 1035, 1348
LguI	GCTCTTC	1 cut(s)	1443
LmnI	GCTCC	1 cut(s)	1433
Lsp1109I	GCAGC	1 cut(s)	891
LweI	GCATC	3 cut(s)	1209, 1328, 1456
MaeI	CTAG	4 cut(s)	819, 1130, 1191, 1226
MaeII	ACGT	2 cut(s)	837, 850
MaeIII	GTNAC	3 cut(s)	85, 151, 1216
MalI	GATC	4 cut(s)	230, 993, 1037, 1350
MboI	GATC	4 cut(s)	228, 991, 1035, 1348
MboII	GAAGA	3 cut(s)	409, 1193, 1430
MhlI	GDGCHC	4 cut(s)	958, 1161, 1438, 1476
MluCI	AATT	6 cut(s)	33, 145, 1065, 1091, 1388, 1522
MlyI	GAGTC	2 cut(s)	869, 1362
Mph1103I	ATGCAT	4 cut(s)	6, 1126, 1149, 1343
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	5 cut(s)	32, 132, 219, 348, 747
MslI	CAYNNNNRTG	1 cut(s)	1152
MspI	CCGG	2 cut(s)	326, 537
MspR9I	CCNGG	2 cut(s)	98, 538
Mva1269I	GAATGC	3 cut(s)	4, 694, 1126
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	102, 263, 1454
NciI	CCSGG	1 cut(s)	538
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	4 cut(s)	228, 991, 1035, 1348
NlaIV	GGNNCC	1 cut(s)	977
NsiI	ATGCAT	4 cut(s)	6, 1126, 1149, 1343
NspI	RCATGY	5 cut(s)	191, 226, 545, 886, 1045
PaeI	GCATGC	1 cut(s)	886
PceI	AGGCCT	1 cut(s)	96
PciI	ACATGT	3 cut(s)	187, 222, 1041
PciSI	GCTCTTC	1 cut(s)	1443
PctI	GAATGC	3 cut(s)	4, 694, 1126
PdmI	GAANNNNTTC	1 cut(s)	209
PflFI	GACNNNGTC	1 cut(s)	1192
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	881
PleI	GAGTC	2 cut(s)	868, 1362
PpsI	GAGTC	2 cut(s)	868, 1362
Ppu21I	YACGTR	1 cut(s)	838
PscI	ACATGT	3 cut(s)	187, 222, 1041
Psp124BI	GAGCTC	2 cut(s)	1438, 1476
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	977
PspPI	GGNCC	2 cut(s)	379, 976
PsyI	GACNNNGTC	1 cut(s)	1192
RsaI	GTAC	4 cut(s)	1017, 1081, 1280, 1300
RsaNI	GTAC	4 cut(s)	1016, 1080, 1279, 1299
RseI	CAYNNNNRTG	1 cut(s)	1152
SacI	GAGCTC	2 cut(s)	1438, 1476
SapI	GCTCTTC	1 cut(s)	1443
SaqAI	TTAA	5 cut(s)	32, 132, 219, 348, 747
SatI	GCNGC	1 cut(s)	880
Sau3AI	GATC	4 cut(s)	228, 991, 1035, 1348
Sau96I	GGNCC	2 cut(s)	379, 976
SchI	GAGTC	2 cut(s)	869, 1362
ScrFI	CCNGG	2 cut(s)	98, 538
SduI	GDGCHC	4 cut(s)	958, 1161, 1438, 1476
SfaNI	GCATC	3 cut(s)	1209, 1328, 1456
SfcI	CTRYAG	1 cut(s)	448
SinI	GGWCC	2 cut(s)	379, 976
SmiMI	CAYNNNNRTG	1 cut(s)	1152
SmlI	CTYRAG	3 cut(s)	52, 1479, 1508
SmoI	CTYRAG	3 cut(s)	52, 1479, 1508
SphI	GCATGC	1 cut(s)	886
Sse9I	AATT	6 cut(s)	33, 145, 1065, 1091, 1388, 1522
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	5 cut(s)	266, 329, 643, 775, 1101
SspI	AATATT	1 cut(s)	1488
SspMI	CTAG	4 cut(s)	819, 1130, 1191, 1226
SstI	GAGCTC	2 cut(s)	1438, 1476
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	96, 536
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	85, 1216, 1496
TaiI	ACGT	2 cut(s)	840, 853
TaqI	TCGA	3 cut(s)	162, 1038, 1374
TasI	AATT	6 cut(s)	33, 145, 1065, 1091, 1388, 1522
TatI	WGTACW	2 cut(s)	1015, 1298
Tru1I	TTAA	5 cut(s)	32, 132, 219, 348, 747
Tru9I	TTAA	5 cut(s)	32, 132, 219, 348, 747
TscAI	CASTG	3 cut(s)	416, 931, 1093
TseI	GCWGC	1 cut(s)	879
TspDTI	ATGAA	5 cut(s)	507, 665, 1274, 1281, 1392
TspRI	CASTG	3 cut(s)	416, 931, 1093
Tth111I	GACNNNGTC	1 cut(s)	1192
Van91I	CCANNNNNTGG	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	379, 976
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	5 cut(s)	191, 226, 545, 886, 1045
XmiI	GTMKAC	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	4 cut(s)	819, 1130, 1191, 1226
Zsp2I	ATGCAT	4 cut(s)	6, 1126, 1149, 1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.