Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0015307

Physical Location & Seq

Genomic Coordinates Forward (+)

24811393 .. 24812774

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTCACTTCGCAAATGCCCAGTTCTCCTTCTTCCTTTTTTTTTCAGTGTTGAAGTCGCTCTCTCAAGTCCCGGCTTCCCAGCCGTGAACTTGGATACCGGTTTCACTCACAGTCACCGTCGCAGCCTCAACGTTTTATCTTTACGAACTTTGAATTCTACGAAACGGGTTCTCTTAGATTTGATCAATAAATGTAGTAGCTTCCCAAGTTTCAAGCAAATCCATGCACAAATTTTAGCTTCTGGGCTGGCTTCCAGTGACTTGGTTGCGATCAGCGTCGTTGGATTTCTCGGAAAATCCGTTACTTCTGTTGATTGCGCTTGTGATTTTTTGAAACAAGCTGATTGGCGCAAGAACTCGTTTCCGTTTAATGTGTTGATCTCCGGATGTGCCAGCGGAGACGCCCCGCGGGCGGCGCTGTTGGCCTATAGGAGGATCGTGAGAGATGGGTTTTGGTTTTTTGGAAAGGGAGAGGGAAGGCAGGTTCATGGGGTGGTTGTGAAGATGGGCTTTCAGTGTGATGTCTATATGCAGAACTCGCTTGTACATTTCTATAGCGTTTGTGGTGATTGCGGTTCTGCGGTCAAGGTGCTTGATGAGATGCCTGATAGAGATGCAGTGTCTTGGACTGGCTTGATATCCGGGCATGTGAAGTCGGGATTGTTTGATGATGCGCTGTCTTTGTTTTCGAGGATGAATGTGAAGCCGAATGTGGCAACTTTGGTTAGTGTGCTTGTGGCTTGCGGACGAATGAGGTGTTTGAGTACGGGGAAGGGGATTCACGGATTGATCTTTAAGCGTCAGCTGGGGATGGATTTGGGGGTAGGGAATGCTGTCTTGGATATATATGTAAAGTGTGAGAGTTTGTGTGATGCAAAGAATTTTTTGGCGACCTTCCTGAGAGGGATATTGTATCTTGGACTAGCATTGAGACTAATAAAATTATTCTTGCTAGTGTGCTTTCGGCTTGTGCCAGTCTTGGGGCCTTTGATTATGGAAGATGGGTGCACCGTGCATGAGTATATTGATCGTAAGGGTATCAAATGGGATGTCCATATTGGAACCTCTCTAATTGACAGTATGCGAAGTGTGGCTGTACATCTATGGCATTGCAGACTTTCGGATTGCATTGTGGGAATGTCTATACATGGAACGGATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

388

Amino Acids

42.4

Weight (kDa)

8.95

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38010
fragaria_vesca	FvH4_7g28780
malus_domestica	MD01G1194200.v1.1
prunus_persica	Prupe.2G288100_v2.0.a1
pyrus_communis	pycom01g20450 pycom07g24000
rosa_chinensis	RchiOBHm_Chr1g0376341
rosa_laevigata	RLG00000026610
rosa_multiflora	Rmu_sc0005594.1_g000021 Rmu_sc0016074.1_g000004 Rmu_sc0028960.1_g000001
rosa_roxburghii	Rroxscaffold_4G00282190
rosa_rugosa	Rorug01G0395700
rosa_samantha	Rh1BG370800 Rh1CG383600
rosa_wichuraiana	Rw1G036110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccII	CGCG	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	383
AciI	CCGC	7 cut(s)	396, 407, 409, 413, 573, 581, 744
AclI	AACGTT	1 cut(s)	132
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	3 cut(s)	154, 231, 880
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	3 cut(s)	546, 766, 1098
AfiI	CCNNNNNNNGG	3 cut(s)	412, 432, 980
AgeI	ACCGGT	1 cut(s)	98
AgsI	TTSAA	4 cut(s)	53, 154, 214, 334
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	4 cut(s)	201, 239, 341, 805
AluI	AGCT	4 cut(s)	201, 239, 341, 805
Alw21I	GWGCWC	1 cut(s)	1010
Alw26I	GTCTC	2 cut(s)	393, 925
Alw44I	GTGCAC	1 cut(s)	1006
AlwI	GGATC	1 cut(s)	443
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	2 cut(s)	423, 983
ApaLI	GTGCAC	1 cut(s)	1006
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	3 cut(s)	154, 231, 880
ArsI	GACNNNNNNTTYG	2 cut(s)	1035, 1067
AsiGI	ACCGGT	1 cut(s)	98
AspLEI	GCGC	4 cut(s)	320, 351, 418, 676
AspS9I	GGNCC	1 cut(s)	983
AsuC2I	CCSGG	2 cut(s)	72, 643
AsuHPI	GGTGA	2 cut(s)	107, 578
BaeGI	GKGCMC	1 cut(s)	1010
Bbv12I	GWGCWC	1 cut(s)	1010
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	4 cut(s)	440, 499, 805, 995
BceAI	ACGGC	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	88
BclI	TGATCA	1 cut(s)	183
BcnI	CCSGG	2 cut(s)	72, 643
BcoDI	GTCTC	2 cut(s)	393, 925
BfaI	CTAG	2 cut(s)	923, 953
BfmI	CTRYAG	2 cut(s)	427, 553
BfoI	RGCGCY	1 cut(s)	419
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	410
BisI	GCNGC	2 cut(s)	124, 414
BlsI	GCNGC	2 cut(s)	125, 415
Bme1390I	CCNGG	2 cut(s)	72, 643
BmgT120I	GGNCC	1 cut(s)	983
BmiI	GGNNCC	2 cut(s)	984, 1063
BmrFI	CCNGG	2 cut(s)	72, 643
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	4 cut(s)	591, 604, 661, 862
BmuI	ACTGGG	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	49
BpuMI	CCSGG	2 cut(s)	72, 643
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	407
BsaWI	WCCGGW	2 cut(s)	98, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 432, 980
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	4 cut(s)	20, 255, 634, 974
Bse3DI	GCAATG	1 cut(s)	1108
BseAI	TCCGGA	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	407
BseGI	GGATG	4 cut(s)	392, 699, 816, 1054
BseLI	CCNNNNNNNGG	3 cut(s)	412, 432, 980
BseMI	GCAATG	1 cut(s)	1108
BseMII	CTCAG	1 cut(s)	890
BseNI	ACTGG	4 cut(s)	20, 255, 634, 974
BseSI	GKGCMC	1 cut(s)	1010
BseXI	GCAGC	1 cut(s)	135
BseYI	CCCAGC	2 cut(s)	79, 805
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	2 cut(s)	425, 985
BshTI	ACCGGT	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	1010
BsiSI	CCGG	4 cut(s)	72, 99, 384, 642
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	3 cut(s)	412, 432, 980
BsmAI	GTCTC	2 cut(s)	393, 925
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	2 cut(s)	425, 985
Bsp1286I	GDGCHC	1 cut(s)	1010
Bsp13I	TCCGGA	1 cut(s)	383
Bsp1407I	TGTACA	2 cut(s)	544, 1096
Bsp143I	GATC	6 cut(s)	183, 270, 378, 435, 789, 1027
BspACI	CCGC	7 cut(s)	396, 407, 409, 413, 573, 581, 744
BspANI	GGCC	2 cut(s)	425, 985
BspCNI	CTCAG	1 cut(s)	891
BspEI	TCCGGA	1 cut(s)	383
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	984, 1063
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	1108
BsrFI	RCCGGY	1 cut(s)	98
BsrGI	TGTACA	2 cut(s)	544, 1096
BsrI	ACTGG	4 cut(s)	20, 255, 634, 974
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	6 cut(s)	183, 270, 378, 435, 789, 1027
BssNI	GRCGYC	1 cut(s)	402
Bst4CI	ACNGT	4 cut(s)	113, 119, 1012, 1079
BstACI	GRCGYC	1 cut(s)	402
BstAUI	TGTACA	2 cut(s)	544, 1096
BstC8I	GCNNGC	4 cut(s)	249, 394, 411, 742
BstDEI	CTNAG	2 cut(s)	175, 899
BstDSI	CCRYGG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	430
BstF5I	GGATG	4 cut(s)	392, 699, 816, 1054
BstFNI	CGCG	1 cut(s)	409
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	4 cut(s)	320, 351, 418, 676
BstKTI	GATC	6 cut(s)	186, 273, 381, 438, 792, 1030
BstMAI	GTCTC	2 cut(s)	393, 925
BstMBI	GATC	6 cut(s)	183, 270, 378, 435, 789, 1027
BstMWI	GCNNNNNNNGC	4 cut(s)	410, 415, 422, 538
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	70, 641
BstSFI	CTRYAG	2 cut(s)	427, 553
BstSLI	GKGCMC	1 cut(s)	1010
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	135
BstXI	CCANNNNNNTGG	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	425, 985
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	4 cut(s)	392, 699, 816, 1054
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	4 cut(s)	52, 262, 521, 624
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	4 cut(s)	249, 394, 411, 742
CfoI	GCGC	4 cut(s)	320, 351, 418, 676
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	983
Cfr42I	CCGCGG	1 cut(s)	410
CseI	GACGC	3 cut(s)	265, 410, 788
Csp6I	GTAC	3 cut(s)	545, 765, 1097
CspAI	ACCGGT	1 cut(s)	98
CviAII	CATG	5 cut(s)	224, 488, 647, 1016, 1148
CviQI	GTAC	3 cut(s)	545, 765, 1097
DdeI	CTNAG	2 cut(s)	175, 899
DpnI	GATC	6 cut(s)	185, 272, 380, 437, 791, 1029
DpnII	GATC	6 cut(s)	183, 270, 378, 435, 789, 1027
Eco32I	GATATC	1 cut(s)	639
EcoNI	CCTNNNNNAGG	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	983
EcoRI	GAATTC	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	5 cut(s)	227, 491, 650, 1019, 1151
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	5 cut(s)	223, 487, 646, 1015, 1147
FauI	CCCGC	2 cut(s)	402, 414
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	124, 414
FokI	GGATG	4 cut(s)	399, 706, 823, 1061
Fsp4HI	GCNGC	2 cut(s)	124, 414
FspBI	CTAG	2 cut(s)	923, 953
GlaI	GCGC	4 cut(s)	319, 350, 417, 675
GluI	GCNGC	2 cut(s)	124, 414
GsaI	CCCAGC	2 cut(s)	83, 809
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	425, 985
HapII	CCGG	4 cut(s)	72, 99, 384, 642
HgaI	GACGC	3 cut(s)	265, 410, 788
HhaI	GCGC	4 cut(s)	320, 351, 418, 676
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	5 cut(s)	227, 491, 650, 1019, 1151
Hin6I	GCGC	4 cut(s)	318, 349, 416, 674
HinP1I	GCGC	4 cut(s)	318, 349, 416, 674
HinfI	GANTC	1 cut(s)	778
HpaII	CCGG	4 cut(s)	72, 99, 384, 642
HphI	GGTGA	2 cut(s)	107, 578
Hpy166II	GTNNAC	2 cut(s)	88, 1008
Hpy188I	TCNGA	2 cut(s)	293, 1123
Hpy188III	TCNNGA	4 cut(s)	384, 439, 657, 898
Hpy8I	GTNNAC	2 cut(s)	88, 1008
Hpy99I	CGWCG	2 cut(s)	123, 281
HpyAV	CCTTC	4 cut(s)	38, 471, 766, 904
HpyCH4III	ACNGT	4 cut(s)	113, 119, 1012, 1079
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	8 cut(s)	227, 532, 617, 875, 1008, 1015, 1113, 1128
HpyF10VI	GCNNNNNNNGC	4 cut(s)	410, 415, 422, 538
HpyF3I	CTNAG	2 cut(s)	175, 899
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	5 cut(s)	227, 491, 650, 1019, 1151
HspAI	GCGC	4 cut(s)	318, 349, 416, 674
Kpn2I	TCCGGA	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	183
KspI	CCGCGG	1 cut(s)	410
Kzo9I	GATC	6 cut(s)	183, 270, 378, 435, 789, 1027
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	4 cut(s)	591, 604, 661, 862
MaeI	CTAG	2 cut(s)	923, 953
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	4 cut(s)	3, 113, 257, 301
MalI	GATC	6 cut(s)	185, 272, 380, 437, 791, 1029
MboI	GATC	6 cut(s)	183, 270, 378, 435, 789, 1027
MboII	GAAGA	3 cut(s)	23, 514, 1010
MhlI	GDGCHC	1 cut(s)	1010
MluCI	AATT	5 cut(s)	154, 231, 880, 941, 1071
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	7 cut(s)	137, 426, 466, 684, 747, 896, 1075
MroI	TCCGGA	1 cut(s)	383
MseI	TTAA	2 cut(s)	369, 795
MspA1I	CMGCKG	3 cut(s)	396, 409, 805
MspI	CCGG	4 cut(s)	72, 99, 384, 642
MspR9I	CCNGG	2 cut(s)	72, 643
Mva1269I	GAATGC	1 cut(s)	835
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	4 cut(s)	410, 415, 422, 538
NciI	CCSGG	2 cut(s)	72, 643
NdeII	GATC	6 cut(s)	183, 270, 378, 435, 789, 1027
NlaIII	CATG	5 cut(s)	227, 491, 650, 1019, 1151
NlaIV	GGNNCC	2 cut(s)	984, 1063
NmuCI	GTSAC	3 cut(s)	3, 113, 257
NspI	RCATGY	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PctI	GAATGC	1 cut(s)	835
PfeI	GAWTC	1 cut(s)	778
PinAI	ACCGGT	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	125, 415
Psp1406I	AACGTT	1 cut(s)	132
PspFI	CCCAGC	2 cut(s)	79, 805
PspN4I	GGNNCC	2 cut(s)	984, 1063
PspPI	GGNCC	1 cut(s)	983
PvuII	CAGCTG	1 cut(s)	805
RsaI	GTAC	3 cut(s)	546, 766, 1098
RsaNI	GTAC	3 cut(s)	545, 765, 1097
SacII	CCGCGG	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	369, 795
SatI	GCNGC	2 cut(s)	124, 414
Sau3AI	GATC	6 cut(s)	183, 270, 378, 435, 789, 1027
Sau96I	GGNCC	1 cut(s)	983
ScrFI	CCNGG	2 cut(s)	72, 643
SduI	GDGCHC	1 cut(s)	1010
SfaNI	GCATC	4 cut(s)	591, 604, 661, 862
SfcI	CTRYAG	2 cut(s)	427, 553
Sfr303I	CCGCGG	1 cut(s)	410
SgrBI	CCGCGG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	5 cut(s)	154, 231, 880, 941, 1071
SsiI	CCGC	7 cut(s)	396, 407, 409, 413, 573, 581, 744
SspMI	CTAG	2 cut(s)	923, 953
StyD4I	CCNGG	2 cut(s)	70, 641
TaaI	ACNGT	4 cut(s)	113, 119, 1012, 1079
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	689
TasI	AATT	5 cut(s)	154, 231, 880, 941, 1071
TatI	WGTACW	2 cut(s)	544, 1096
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	778
Tru1I	TTAA	2 cut(s)	369, 795
Tru9I	TTAA	2 cut(s)	369, 795
TscAI	CASTG	4 cut(s)	52, 262, 521, 624
TseFI	GTSAC	3 cut(s)	3, 113, 257
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	3 cut(s)	3, 113, 257
TspDTI	ATGAA	2 cut(s)	476, 710
TspGWI	ACGGA	3 cut(s)	289, 354, 798
TspRI	CASTG	4 cut(s)	52, 262, 521, 624
VneI	GTGCAC	1 cut(s)	1006
XagI	CCTNNNNNAGG	1 cut(s)	430
XapI	RAATTY	3 cut(s)	154, 231, 880
XceI	RCATGY	1 cut(s)	650
XspI	CTAG	2 cut(s)	923, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.