FvH4_7g28780

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
21286195 .. 21288476
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28780.t1

Sequence Viewer

Length: 1746 bp
ATGCAGTCTCTGAAATGGGTTCTCTTGGATTTGCTTGCTCAATGCAAAACCATGACTTGTTTCAAGCAAATCCACGCAAAGATTGAAACTTCAGGCCTGGCTTGCAATGACTTGGTTGCCACCAATGTTGTCAAGTTCTTGGGAAAATCTGCAACCCATTTCGATTACGCTTGTGATTTTCTGAAGCAACTTGATTACCGTGTGAGCTCTTTTCCATTTAACATGTTGATCTCTAGCTATGGTAATGGTGAAAAGTCCAGGGAGGCGGTTTTGGTTTATAGAAGGATTGTTAGAGATGGGTTTGTGCCTGATATGTTTACTATTCCGGCGGTGTTGAAATGTTGTGTTAAGTTTTTGGGGAAAGGAGAAGGCAGACAGGTTCATGGTGTGGTTGTGAAGATGGGTTTTGCGTGTGATGTGTATGTTGAGAACTCGCTTGTGCATTTCTATAGTGTTTGTGGGGAGTGTGGTGATGCGAAGAAGGTGTTTGATGAAATGCGTGTGAGGGATGTGGTGTCTTGGACTGGTTTGGTTTCGGGGCATGTCAAGGCAGGGTTGTATGGTGAGGCTGTGGAGTTGTTCTTGAGGATGGATGTGAAGCCGAATGCGGCGAGTTTTGTTAGTGTGGTTGTGGCGTGTGGAAGGATGGGGTATTTGAATGTGGGGAAGGGTGTTCATGGATTGATTTTGAAGCATTCGTTGGGGATGGATTTGGTGGTGGGCAATGCTGTTGTGGATATGTATGTAAAGTGTGAGAGTCTGTGTGAGGCGAAGCGGGTTTTTGATGAGCTTCCGGAAAGAGACATTGTGTCTTGGACTAGCTTGATAAGTGGATACGTGCAATGTAAACGTCCGAGGGAGTCGCTGGATTTGTTTTGTGAGATGCAGAGTCTGGGAATACAGCCTGATAAGATTATACTATCCAGTGTGCTTTCAGCCTGTGCCAGTCTTGGGGCACTTGATTATGGTAGATGGGTGCATGAGTATATTGATCGTAAGGGTATCAAATGGGATGTGCATATTGGAACAGCTCTGATCGACATGTATGCTAAGTGCGGTTGTATAAATATGGCATTGCGTACTTTCAGTGAATTGCCGGGTGGGAATGTCTCTACTTGGAATGCATTGCTAGGCGGTTTAGCCATGCATGGTCATGGGGATGAGGCGCTCAAAAAGTTTGAAGAAATGACTAGGTCTGGCATCAGGCCAAATGCGGTTACTTTTCTAGCCGTCTTGACAGCTTGCTGCCATTCCGGTTTGATTGATGAAGGCCGCGGATACTTTAATGAGATGATTAGTCCACCTCATAGTCTGTCTCCAAGATTAGAACACTACGGATGCATGGTTGATCTGCTATGTAGAGCTGGACTCCTGGATGAAGCTCAGAAATTGATAAACACCATGCCTATGCAACCTGATGTGCTGATATTAGGAGCTCTTCTAAGTGCTTGCAAGGCCAAAGATGATGCTGAGCTCTCTCAAGAAATATTAGACCATCTCCTGCACCTTGAGTGGGAAGACAGTGGAGTTTATGTGCTTCTATCAAACATATTTGCTGCTAATAAAAGATGGGCTGATGCAACAAGAATAAGGAGGTTGATGAAGAAGAGAGGTATACAGAAGGCCCCCGGCTCAAGTGTCATAGAGGTGGACGGCAAGGCTCACGAGTTTCTAGTTGGGGATACTAGCCACCCTCAAAATGAGGATATACATGAGGTGTTGGACATCCTTGCTAACACCAGCTAA

Protein Analysis

582

Amino Acids

64.22

Weight (kDa)

6.35

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 267 - 315 1.4e-09 PPR repeat family
PPR PF01535 270 - 300 2.3e-08 PPR repeat
PPR_2 PF13041 369 - 417 2.2e-13 PPR repeat family
PPR PF01535 371 - 401 1.7e-06 PPR repeat
E_motif PF20431 489 - 549 1.7e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015307)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38010
fragaria_vesca FvH4_7g28780
malus_domestica MD01G1194200.v1.1
prunus_persica Prupe.2G288100_v2.0.a1
pyrus_communis pycom01g20450 pycom07g24000
rosa_chinensis RchiOBHm_Chr1g0376341
rosa_laevigata RLG00000026610
rosa_multiflora Rmu_sc0005594.1_g000021 Rmu_sc0016074.1_g000004 Rmu_sc0028960.1_g000001
rosa_roxburghii Rroxscaffold_4G00282190
rosa_rugosa Rorug01G0395700
rosa_samantha Rh1BG370800 Rh1CG383600
rosa_wichuraiana Rw1G036110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1615
AccII CGCG 1 cut(s) 1275
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 9 cut(s) 266, 329, 608, 775, 1056, 1134, 1214, 1273, 1275
AcuI CTGAAG 2 cut(s) 75, 203
AfaI GTAC 1 cut(s) 1081
AfiI CCNNNNNNNGG 2 cut(s) 951, 1513
AflIII ACRYGT 2 cut(s) 222, 1041
AgsI TTSAA 6 cut(s) 64, 86, 337, 658, 691, 1181
AhdI GACNNNNNGTC 1 cut(s) 808
AjnI CCWGG 3 cut(s) 96, 257, 1371
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
Alw21I GWGCWC 3 cut(s) 209, 1438, 1476
Alw26I GTCTC 4 cut(s) 12, 795, 1114, 1320
AlwNI CAGNNNCTG 2 cut(s) 10, 892
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 5 cut(s) 94, 1205, 1270, 1455, 1623
ApeKI GCWGC 2 cut(s) 1245, 1556
AspLEI GCGC 1 cut(s) 1168
AspS9I GGNCC 1 cut(s) 1624
AsuC2I CCSGG 2 cut(s) 1098, 1629
AsuHPI GGTGA 3 cut(s) 260, 482, 575
BaeGI GKGCMC 1 cut(s) 958
BanII GRGCYC 3 cut(s) 209, 1438, 1476
BauI CACGAG 1 cut(s) 1664
BbsI GAAGAC 1 cut(s) 1524
Bbv12I GWGCWC 3 cut(s) 209, 1438, 1476
BbvI GCAGC 2 cut(s) 1232, 1543
BccI CCATC 8 cut(s) 290, 394, 583, 640, 700, 966, 1503, 1563
BceAI ACGGC 2 cut(s) 1214, 1669
BcgI CGANNNNNNTGC 2 cut(s) 1028, 1062
BciT130I CCWGG 3 cut(s) 98, 259, 1373
BciVI GTATCC 3 cut(s) 827, 1271, 1675
BcnI CCSGG 2 cut(s) 1098, 1629
BcoDI GTCTC 4 cut(s) 12, 795, 1114, 1320
BfaI CTAG 7 cut(s) 234, 819, 1130, 1191, 1226, 1673, 1686
BfmI CTRYAG 1 cut(s) 448
BfoI RGCGCY 1 cut(s) 1169
BfuI GTATCC 3 cut(s) 827, 1271, 1675
BisI GCNGC 4 cut(s) 609, 1246, 1273, 1557
BlpI GCTNAGC 1 cut(s) 1470
BlsI GCNGC 4 cut(s) 610, 1247, 1274, 1558
Bme1390I CCNGG 5 cut(s) 98, 259, 1098, 1373, 1629
BmeRI GACNNNNNGTC 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 1624
BmiI GGNNCC 1 cut(s) 1626
BmrFI CCNGG 5 cut(s) 98, 259, 1098, 1373, 1629
BmsI GCATC 6 cut(s) 463, 873, 1209, 1328, 1456, 1567
BpiI GAAGAC 1 cut(s) 1524
BplI GAGNNNNNCTC 2 cut(s) 1353, 1385
Bpu1102I GCTNAGC 1 cut(s) 1470
BpuEI CTTGAG 4 cut(s) 604, 1464, 1529, 1618
BpuMI CCSGG 2 cut(s) 1098, 1629
BsaAI YACGTR 1 cut(s) 838
BsaJI CCNNGG 4 cut(s) 258, 854, 1273, 1627
BsaWI WCCGGW 2 cut(s) 793, 1253
BsaXI ACNNNNNCTCC 2 cut(s) 1518, 1548
Bsc4I CCNNNNNNNGG 2 cut(s) 951, 1513
Bse1I ACTGG 3 cut(s) 529, 924, 945
Bse3DI GCAATG 5 cut(s) 112, 730, 848, 1073, 1124
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 3 cut(s) 98, 259, 1373
BseDI CCNNGG 4 cut(s) 258, 854, 1273, 1627
BseLI CCNNNNNNNGG 2 cut(s) 951, 1513
BseMI GCAATG 5 cut(s) 112, 730, 848, 1073, 1124
BseMII CTCAG 2 cut(s) 1397, 1461
BseNI ACTGG 3 cut(s) 529, 924, 945
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 2 cut(s) 1232, 1543
BsgI GTGCAG 1 cut(s) 1487
Bsh1236I CGCG 1 cut(s) 1275
BshFI GGCC 5 cut(s) 96, 1207, 1272, 1457, 1625
BsiHKAI GWGCWC 3 cut(s) 209, 1438, 1476
BsiSI CCGG 5 cut(s) 326, 794, 1097, 1254, 1629
BslI CCNNNNNNNGG 2 cut(s) 951, 1513
BsmAI GTCTC 4 cut(s) 12, 795, 1114, 1320
BsmI GAATGC 3 cut(s) 610, 694, 1126
BsnI GGCC 5 cut(s) 96, 1207, 1272, 1457, 1625
Bsp1286I GDGCHC 4 cut(s) 209, 958, 1438, 1476
Bsp13I TCCGGA 1 cut(s) 793
Bsp143I GATC 4 cut(s) 228, 991, 1035, 1348
Bsp1720I GCTNAGC 1 cut(s) 1470
BspACI CCGC 9 cut(s) 266, 329, 608, 775, 1056, 1134, 1214, 1273, 1275
BspANI GGCC 5 cut(s) 96, 1207, 1272, 1457, 1625
BspCNI CTCAG 2 cut(s) 1396, 1462
BspEI TCCGGA 1 cut(s) 793
BspFNI CGCG 1 cut(s) 1275
BspLI GGNNCC 1 cut(s) 1626
BspQI GCTCTTC 1 cut(s) 1443
BsrDI GCAATG 5 cut(s) 112, 730, 848, 1073, 1124
BsrI ACTGG 3 cut(s) 529, 924, 945
BssECI CCNNGG 4 cut(s) 258, 854, 1273, 1627
BssMI GATC 4 cut(s) 228, 991, 1035, 1348
BssNAI GTATAC 1 cut(s) 1616
BssSI CACGAG 1 cut(s) 1664
Bst1107I GTATAC 1 cut(s) 1616
Bst2BI CACGAG 1 cut(s) 1664
Bst2UI CCWGG 3 cut(s) 98, 259, 1373
Bst4CI ACNGT 2 cut(s) 200, 1523
Bst6I CTCTTC 2 cut(s) 1443, 1601
BstBAI YACGTR 1 cut(s) 838
BstC8I GCNNGC 4 cut(s) 36, 103, 1243, 1450
BstDEI CTNAG 4 cut(s) 1050, 1383, 1442, 1470
BstDSI CCRYGG 1 cut(s) 1273
BstFNI CGCG 1 cut(s) 1275
BstH2I RGCGCY 1 cut(s) 1169
BstHHI GCGC 1 cut(s) 1168
BstKTI GATC 4 cut(s) 231, 994, 1038, 1351
BstMAI GTCTC 4 cut(s) 12, 795, 1114, 1320
BstMBI GATC 4 cut(s) 228, 991, 1035, 1348
BstMWI GCNNNNNNNGC 2 cut(s) 102, 1454
BstNI CCWGG 3 cut(s) 98, 259, 1373
BstNSI RCATGY 3 cut(s) 226, 545, 1045
BstSCI CCNGG 5 cut(s) 96, 257, 1096, 1371, 1627
BstSFI CTRYAG 1 cut(s) 448
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 1 cut(s) 1275
BstV1I GCAGC 2 cut(s) 1232, 1543
BstV2I GAAGAC 1 cut(s) 1524
BstZ17I GTATAC 1 cut(s) 1616
BsuI GTATCC 3 cut(s) 827, 1271, 1675
BsuRI GGCC 5 cut(s) 96, 1207, 1272, 1457, 1625
BtgI CCRYGG 1 cut(s) 1273
BtsIMutI CAGTG 3 cut(s) 931, 1093, 1528
Cac8I GCNNGC 4 cut(s) 36, 103, 1243, 1450
CaiI CAGNNNCTG 2 cut(s) 10, 892
CfoI GCGC 1 cut(s) 1168
Cfr13I GGNCC 1 cut(s) 1624
Cfr42I CCGCGG 1 cut(s) 1276
Csp6I GTAC 1 cut(s) 1080
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviQI GTAC 1 cut(s) 1080
DdeI CTNAG 4 cut(s) 1050, 1383, 1442, 1470
DpnI GATC 4 cut(s) 230, 993, 1037, 1350
DpnII GATC 4 cut(s) 228, 991, 1035, 1348
DriI GACNNNNNGTC 1 cut(s) 808
Eam1104I CTCTTC 2 cut(s) 1443, 1601
Eam1105I GACNNNNNGTC 1 cut(s) 808
EarI CTCTTC 2 cut(s) 1443, 1601
Ecl136II GAGCTC 3 cut(s) 207, 1436, 1474
Eco147I AGGCCT 1 cut(s) 96
Eco24I GRGCYC 3 cut(s) 209, 1438, 1476
Eco53kI GAGCTC 3 cut(s) 207, 1436, 1474
Eco57I CTGAAG 2 cut(s) 75, 203
EcoICRI GAGCTC 3 cut(s) 207, 1436, 1474
EcoO109I RGGNCCY 1 cut(s) 1624
EcoRII CCWGG 3 cut(s) 96, 257, 1371
EcoT22I ATGCAT 3 cut(s) 1126, 1149, 1343
EcoT38I GRGCYC 3 cut(s) 209, 1438, 1476
FauI CCCGC 1 cut(s) 768
FblI GTMKAC 1 cut(s) 1615
Fnu4HI GCNGC 4 cut(s) 609, 1246, 1273, 1557
FriOI GRGCYC 3 cut(s) 209, 1438, 1476
Fsp4HI GCNGC 4 cut(s) 609, 1246, 1273, 1557
FspBI CTAG 7 cut(s) 234, 819, 1130, 1191, 1226, 1673, 1686
GlaI GCGC 1 cut(s) 1167
GluI GCNGC 4 cut(s) 609, 1246, 1273, 1557
HaeII RGCGCY 1 cut(s) 1169
HaeIII GGCC 5 cut(s) 96, 1207, 1272, 1457, 1625
HapII CCGG 5 cut(s) 326, 794, 1097, 1254, 1629
HhaI GCGC 1 cut(s) 1168
Hin6I GCGC 1 cut(s) 1166
HinP1I GCGC 1 cut(s) 1166
HinfI GANTC 4 cut(s) 757, 860, 889, 1368
HpaII CCGG 5 cut(s) 326, 794, 1097, 1254, 1629
HphI GGTGA 3 cut(s) 260, 482, 575
Hpy166II GTNNAC 5 cut(s) 318, 848, 1301, 1616, 1651
Hpy188I TCNGA 5 cut(s) 12, 183, 855, 1035, 1386
Hpy188III TCNNGA 5 cut(s) 583, 794, 1234, 1481, 1664
Hpy8I GTNNAC 5 cut(s) 318, 848, 1301, 1616, 1651
HpyAV CCTTC 7 cut(s) 276, 362, 475, 636, 661, 1262, 1615
HpyCH4III ACNGT 2 cut(s) 200, 1523
HpyCH4IV ACGT 2 cut(s) 837, 850
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 1454
HpyF3I CTNAG 4 cut(s) 1050, 1383, 1442, 1470
HpySE526I ACGT 2 cut(s) 837, 850
HspAI GCGC 1 cut(s) 1166
Kpn2I TCCGGA 1 cut(s) 793
KspI CCGCGG 1 cut(s) 1276
Kzo9I GATC 4 cut(s) 228, 991, 1035, 1348
LguI GCTCTTC 1 cut(s) 1443
LmnI GCTCC 1 cut(s) 1433
Lsp1109I GCAGC 2 cut(s) 1232, 1543
LweI GCATC 6 cut(s) 463, 873, 1209, 1328, 1456, 1567
MaeI CTAG 7 cut(s) 234, 819, 1130, 1191, 1226, 1673, 1686
MaeII ACGT 2 cut(s) 837, 850
MaeIII GTNAC 1 cut(s) 1216
MalI GATC 4 cut(s) 230, 993, 1037, 1350
MboI GATC 4 cut(s) 228, 991, 1035, 1348
MboII GAAGA 7 cut(s) 409, 490, 1193, 1430, 1529, 1615, 1618
MhlI GDGCHC 4 cut(s) 209, 958, 1438, 1476
MluCI AATT 2 cut(s) 1091, 1388
MlyI GAGTC 4 cut(s) 766, 869, 898, 1362
MmeI TCCRAC 1 cut(s) 1701
Mph1103I ATGCAT 3 cut(s) 1126, 1149, 1343
MroI TCCGGA 1 cut(s) 793
MseI TTAA 3 cut(s) 219, 348, 1284
MslI CAYNNNNRTG 4 cut(s) 1152, 1158, 1406, 1646
MspA1I CMGCKG 1 cut(s) 1275
MspI CCGG 5 cut(s) 326, 794, 1097, 1254, 1629
MspR9I CCNGG 5 cut(s) 98, 259, 1098, 1373, 1629
Mva1269I GAATGC 3 cut(s) 610, 694, 1126
MvaI CCWGG 3 cut(s) 98, 259, 1373
MvnI CGCG 1 cut(s) 1275
MwoI GCNNNNNNNGC 2 cut(s) 102, 1454
NciI CCSGG 2 cut(s) 1098, 1629
NdeII GATC 4 cut(s) 228, 991, 1035, 1348
NlaIV GGNNCC 1 cut(s) 1626
NsiI ATGCAT 3 cut(s) 1126, 1149, 1343
NspI RCATGY 3 cut(s) 226, 545, 1045
PceI AGGCCT 1 cut(s) 96
PciI ACATGT 2 cut(s) 222, 1041
PciSI GCTCTTC 1 cut(s) 1443
PctI GAATGC 3 cut(s) 610, 694, 1126
PflFI GACNNNGTC 1 cut(s) 1192
PfoI TCCNGGA 1 cut(s) 1371
PkrI GCNGC 4 cut(s) 610, 1247, 1274, 1558
PleI GAGTC 4 cut(s) 765, 868, 897, 1362
PpsI GAGTC 4 cut(s) 765, 868, 897, 1362
Ppu21I YACGTR 1 cut(s) 838
PscI ACATGT 2 cut(s) 222, 1041
Psp124BI GAGCTC 3 cut(s) 209, 1438, 1476
Psp6I CCWGG 3 cut(s) 96, 257, 1371
PspGI CCWGG 3 cut(s) 96, 257, 1371
PspN4I GGNNCC 1 cut(s) 1626
PspPI GGNCC 1 cut(s) 1624
PstNI CAGNNNCTG 2 cut(s) 10, 892
PsyI GACNNNGTC 1 cut(s) 1192
RsaI GTAC 1 cut(s) 1081
RsaNI GTAC 1 cut(s) 1080
RseI CAYNNNNRTG 4 cut(s) 1152, 1158, 1406, 1646
SacI GAGCTC 3 cut(s) 209, 1438, 1476
SacII CCGCGG 1 cut(s) 1276
SapI GCTCTTC 1 cut(s) 1443
SaqAI TTAA 3 cut(s) 219, 348, 1284
SatI GCNGC 4 cut(s) 609, 1246, 1273, 1557
Sau3AI GATC 4 cut(s) 228, 991, 1035, 1348
Sau96I GGNCC 1 cut(s) 1624
SchI GAGTC 4 cut(s) 766, 869, 898, 1362
ScrFI CCNGG 5 cut(s) 98, 259, 1098, 1373, 1629
SduI GDGCHC 4 cut(s) 209, 958, 1438, 1476
SfaNI GCATC 6 cut(s) 463, 873, 1209, 1328, 1456, 1567
SfcI CTRYAG 1 cut(s) 448
Sfr303I CCGCGG 1 cut(s) 1276
SgrBI CCGCGG 1 cut(s) 1276
SmiMI CAYNNNNRTG 4 cut(s) 1152, 1158, 1406, 1646
SmlI CTYRAG 4 cut(s) 583, 1479, 1508, 1633
SmoI CTYRAG 4 cut(s) 583, 1479, 1508, 1633
Sse9I AATT 2 cut(s) 1091, 1388
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 9 cut(s) 266, 329, 608, 775, 1056, 1134, 1214, 1273, 1275
SspI AATATT 1 cut(s) 1488
SspMI CTAG 7 cut(s) 234, 819, 1130, 1191, 1226, 1673, 1686
SstI GAGCTC 3 cut(s) 209, 1438, 1476
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 5 cut(s) 96, 257, 1096, 1371, 1627
TaaI ACNGT 2 cut(s) 200, 1523
TaiI ACGT 2 cut(s) 840, 853
TaqI TCGA 2 cut(s) 162, 1038
TasI AATT 2 cut(s) 1091, 1388
TauI GCSGC 2 cut(s) 611, 1275
Tru1I TTAA 3 cut(s) 219, 348, 1284
Tru9I TTAA 3 cut(s) 219, 348, 1284
TscAI CASTG 3 cut(s) 931, 1093, 1528
TseI GCWGC 2 cut(s) 1245, 1556
TspDTI ATGAA 6 cut(s) 371, 507, 665, 1281, 1392, 1616
TspGWI ACGGA 1 cut(s) 1350
TspRI CASTG 3 cut(s) 931, 1093, 1528
Tth111I GACNNNGTC 1 cut(s) 1192
XceI RCATGY 3 cut(s) 226, 545, 1045
XmiI GTMKAC 1 cut(s) 1615
XspI CTAG 7 cut(s) 234, 819, 1130, 1191, 1226, 1673, 1686
Zsp2I ATGCAT 3 cut(s) 1126, 1149, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.