Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38010 |
| fragaria_vesca | FvH4_7g28780 |
| malus_domestica | MD01G1194200.v1.1 |
| prunus_persica | Prupe.2G288100_v2.0.a1 |
| pyrus_communis | pycom01g20450 pycom07g24000 |
| rosa_chinensis | RchiOBHm_Chr1g0376341 |
| rosa_laevigata | RLG00000026610 |
| rosa_multiflora | Rmu_sc0005594.1_g000021 Rmu_sc0016074.1_g000004 Rmu_sc0028960.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00282190 |
| rosa_rugosa | Rorug01G0395700 |
| rosa_samantha | Rh1BG370800 Rh1CG383600 |
| rosa_wichuraiana | Rw1G036110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1615 |
| AccII | CGCG | 1 cut(s) | 1275 |
| AccIII | TCCGGA | 1 cut(s) | 793 |
| AciI | CCGC | 9 cut(s) | 266, 329, 608, 775, 1056, 1134, 1214, 1273, 1275 |
| AcuI | CTGAAG | 2 cut(s) | 75, 203 |
| AfaI | GTAC | 1 cut(s) | 1081 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 951, 1513 |
| AflIII | ACRYGT | 2 cut(s) | 222, 1041 |
| AgsI | TTSAA | 6 cut(s) | 64, 86, 337, 658, 691, 1181 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 808 |
| AjnI | CCWGG | 3 cut(s) | 96, 257, 1371 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 683, 715 |
| Alw21I | GWGCWC | 3 cut(s) | 209, 1438, 1476 |
| Alw26I | GTCTC | 4 cut(s) | 12, 795, 1114, 1320 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 10, 892 |
| Aor13HI | TCCGGA | 1 cut(s) | 793 |
| AoxI | GGCC | 5 cut(s) | 94, 1205, 1270, 1455, 1623 |
| ApeKI | GCWGC | 2 cut(s) | 1245, 1556 |
| AspLEI | GCGC | 1 cut(s) | 1168 |
| AspS9I | GGNCC | 1 cut(s) | 1624 |
| AsuC2I | CCSGG | 2 cut(s) | 1098, 1629 |
| AsuHPI | GGTGA | 3 cut(s) | 260, 482, 575 |
| BaeGI | GKGCMC | 1 cut(s) | 958 |
| BanII | GRGCYC | 3 cut(s) | 209, 1438, 1476 |
| BauI | CACGAG | 1 cut(s) | 1664 |
| BbsI | GAAGAC | 1 cut(s) | 1524 |
| Bbv12I | GWGCWC | 3 cut(s) | 209, 1438, 1476 |
| BbvI | GCAGC | 2 cut(s) | 1232, 1543 |
| BccI | CCATC | 8 cut(s) | 290, 394, 583, 640, 700, 966, 1503, 1563 |
| BceAI | ACGGC | 2 cut(s) | 1214, 1669 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1028, 1062 |
| BciT130I | CCWGG | 3 cut(s) | 98, 259, 1373 |
| BciVI | GTATCC | 3 cut(s) | 827, 1271, 1675 |
| BcnI | CCSGG | 2 cut(s) | 1098, 1629 |
| BcoDI | GTCTC | 4 cut(s) | 12, 795, 1114, 1320 |
| BfaI | CTAG | 7 cut(s) | 234, 819, 1130, 1191, 1226, 1673, 1686 |
| BfmI | CTRYAG | 1 cut(s) | 448 |
| BfoI | RGCGCY | 1 cut(s) | 1169 |
| BfuI | GTATCC | 3 cut(s) | 827, 1271, 1675 |
| BisI | GCNGC | 4 cut(s) | 609, 1246, 1273, 1557 |
| BlpI | GCTNAGC | 1 cut(s) | 1470 |
| BlsI | GCNGC | 4 cut(s) | 610, 1247, 1274, 1558 |
| Bme1390I | CCNGG | 5 cut(s) | 98, 259, 1098, 1373, 1629 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 808 |
| BmgT120I | GGNCC | 1 cut(s) | 1624 |
| BmiI | GGNNCC | 1 cut(s) | 1626 |
| BmrFI | CCNGG | 5 cut(s) | 98, 259, 1098, 1373, 1629 |
| BmsI | GCATC | 6 cut(s) | 463, 873, 1209, 1328, 1456, 1567 |
| BpiI | GAAGAC | 1 cut(s) | 1524 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1353, 1385 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1470 |
| BpuEI | CTTGAG | 4 cut(s) | 604, 1464, 1529, 1618 |
| BpuMI | CCSGG | 2 cut(s) | 1098, 1629 |
| BsaAI | YACGTR | 1 cut(s) | 838 |
| BsaJI | CCNNGG | 4 cut(s) | 258, 854, 1273, 1627 |
| BsaWI | WCCGGW | 2 cut(s) | 793, 1253 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1518, 1548 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 951, 1513 |
| Bse1I | ACTGG | 3 cut(s) | 529, 924, 945 |
| Bse3DI | GCAATG | 5 cut(s) | 112, 730, 848, 1073, 1124 |
| BseAI | TCCGGA | 1 cut(s) | 793 |
| BseBI | CCWGG | 3 cut(s) | 98, 259, 1373 |
| BseDI | CCNNGG | 4 cut(s) | 258, 854, 1273, 1627 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 951, 1513 |
| BseMI | GCAATG | 5 cut(s) | 112, 730, 848, 1073, 1124 |
| BseMII | CTCAG | 2 cut(s) | 1397, 1461 |
| BseNI | ACTGG | 3 cut(s) | 529, 924, 945 |
| BseSI | GKGCMC | 1 cut(s) | 958 |
| BseXI | GCAGC | 2 cut(s) | 1232, 1543 |
| BsgI | GTGCAG | 1 cut(s) | 1487 |
| Bsh1236I | CGCG | 1 cut(s) | 1275 |
| BshFI | GGCC | 5 cut(s) | 96, 1207, 1272, 1457, 1625 |
| BsiHKAI | GWGCWC | 3 cut(s) | 209, 1438, 1476 |
| BsiSI | CCGG | 5 cut(s) | 326, 794, 1097, 1254, 1629 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 951, 1513 |
| BsmAI | GTCTC | 4 cut(s) | 12, 795, 1114, 1320 |
| BsmI | GAATGC | 3 cut(s) | 610, 694, 1126 |
| BsnI | GGCC | 5 cut(s) | 96, 1207, 1272, 1457, 1625 |
| Bsp1286I | GDGCHC | 4 cut(s) | 209, 958, 1438, 1476 |
| Bsp13I | TCCGGA | 1 cut(s) | 793 |
| Bsp143I | GATC | 4 cut(s) | 228, 991, 1035, 1348 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1470 |
| BspACI | CCGC | 9 cut(s) | 266, 329, 608, 775, 1056, 1134, 1214, 1273, 1275 |
| BspANI | GGCC | 5 cut(s) | 96, 1207, 1272, 1457, 1625 |
| BspCNI | CTCAG | 2 cut(s) | 1396, 1462 |
| BspEI | TCCGGA | 1 cut(s) | 793 |
| BspFNI | CGCG | 1 cut(s) | 1275 |
| BspLI | GGNNCC | 1 cut(s) | 1626 |
| BspQI | GCTCTTC | 1 cut(s) | 1443 |
| BsrDI | GCAATG | 5 cut(s) | 112, 730, 848, 1073, 1124 |
| BsrI | ACTGG | 3 cut(s) | 529, 924, 945 |
| BssECI | CCNNGG | 4 cut(s) | 258, 854, 1273, 1627 |
| BssMI | GATC | 4 cut(s) | 228, 991, 1035, 1348 |
| BssNAI | GTATAC | 1 cut(s) | 1616 |
| BssSI | CACGAG | 1 cut(s) | 1664 |
| Bst1107I | GTATAC | 1 cut(s) | 1616 |
| Bst2BI | CACGAG | 1 cut(s) | 1664 |
| Bst2UI | CCWGG | 3 cut(s) | 98, 259, 1373 |
| Bst4CI | ACNGT | 2 cut(s) | 200, 1523 |
| Bst6I | CTCTTC | 2 cut(s) | 1443, 1601 |
| BstBAI | YACGTR | 1 cut(s) | 838 |
| BstC8I | GCNNGC | 4 cut(s) | 36, 103, 1243, 1450 |
| BstDEI | CTNAG | 4 cut(s) | 1050, 1383, 1442, 1470 |
| BstDSI | CCRYGG | 1 cut(s) | 1273 |
| BstFNI | CGCG | 1 cut(s) | 1275 |
| BstH2I | RGCGCY | 1 cut(s) | 1169 |
| BstHHI | GCGC | 1 cut(s) | 1168 |
| BstKTI | GATC | 4 cut(s) | 231, 994, 1038, 1351 |
| BstMAI | GTCTC | 4 cut(s) | 12, 795, 1114, 1320 |
| BstMBI | GATC | 4 cut(s) | 228, 991, 1035, 1348 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 102, 1454 |
| BstNI | CCWGG | 3 cut(s) | 98, 259, 1373 |
| BstNSI | RCATGY | 3 cut(s) | 226, 545, 1045 |
| BstSCI | CCNGG | 5 cut(s) | 96, 257, 1096, 1371, 1627 |
| BstSFI | CTRYAG | 1 cut(s) | 448 |
| BstSLI | GKGCMC | 1 cut(s) | 958 |
| BstUI | CGCG | 1 cut(s) | 1275 |
| BstV1I | GCAGC | 2 cut(s) | 1232, 1543 |
| BstV2I | GAAGAC | 1 cut(s) | 1524 |
| BstZ17I | GTATAC | 1 cut(s) | 1616 |
| BsuI | GTATCC | 3 cut(s) | 827, 1271, 1675 |
| BsuRI | GGCC | 5 cut(s) | 96, 1207, 1272, 1457, 1625 |
| BtgI | CCRYGG | 1 cut(s) | 1273 |
| BtsIMutI | CAGTG | 3 cut(s) | 931, 1093, 1528 |
| Cac8I | GCNNGC | 4 cut(s) | 36, 103, 1243, 1450 |
| CaiI | CAGNNNCTG | 2 cut(s) | 10, 892 |
| CfoI | GCGC | 1 cut(s) | 1168 |
| Cfr13I | GGNCC | 1 cut(s) | 1624 |
| Cfr42I | CCGCGG | 1 cut(s) | 1276 |
| Csp6I | GTAC | 1 cut(s) | 1080 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 109, 144 |
| CviQI | GTAC | 1 cut(s) | 1080 |
| DdeI | CTNAG | 4 cut(s) | 1050, 1383, 1442, 1470 |
| DpnI | GATC | 4 cut(s) | 230, 993, 1037, 1350 |
| DpnII | GATC | 4 cut(s) | 228, 991, 1035, 1348 |
| DriI | GACNNNNNGTC | 1 cut(s) | 808 |
| Eam1104I | CTCTTC | 2 cut(s) | 1443, 1601 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 808 |
| EarI | CTCTTC | 2 cut(s) | 1443, 1601 |
| Ecl136II | GAGCTC | 3 cut(s) | 207, 1436, 1474 |
| Eco147I | AGGCCT | 1 cut(s) | 96 |
| Eco24I | GRGCYC | 3 cut(s) | 209, 1438, 1476 |
| Eco53kI | GAGCTC | 3 cut(s) | 207, 1436, 1474 |
| Eco57I | CTGAAG | 2 cut(s) | 75, 203 |
| EcoICRI | GAGCTC | 3 cut(s) | 207, 1436, 1474 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1624 |
| EcoRII | CCWGG | 3 cut(s) | 96, 257, 1371 |
| EcoT22I | ATGCAT | 3 cut(s) | 1126, 1149, 1343 |
| EcoT38I | GRGCYC | 3 cut(s) | 209, 1438, 1476 |
| FauI | CCCGC | 1 cut(s) | 768 |
| FblI | GTMKAC | 1 cut(s) | 1615 |
| Fnu4HI | GCNGC | 4 cut(s) | 609, 1246, 1273, 1557 |
| FriOI | GRGCYC | 3 cut(s) | 209, 1438, 1476 |
| Fsp4HI | GCNGC | 4 cut(s) | 609, 1246, 1273, 1557 |
| FspBI | CTAG | 7 cut(s) | 234, 819, 1130, 1191, 1226, 1673, 1686 |
| GlaI | GCGC | 1 cut(s) | 1167 |
| GluI | GCNGC | 4 cut(s) | 609, 1246, 1273, 1557 |
| HaeII | RGCGCY | 1 cut(s) | 1169 |
| HaeIII | GGCC | 5 cut(s) | 96, 1207, 1272, 1457, 1625 |
| HapII | CCGG | 5 cut(s) | 326, 794, 1097, 1254, 1629 |
| HhaI | GCGC | 1 cut(s) | 1168 |
| Hin6I | GCGC | 1 cut(s) | 1166 |
| HinP1I | GCGC | 1 cut(s) | 1166 |
| HinfI | GANTC | 4 cut(s) | 757, 860, 889, 1368 |
| HpaII | CCGG | 5 cut(s) | 326, 794, 1097, 1254, 1629 |
| HphI | GGTGA | 3 cut(s) | 260, 482, 575 |
| Hpy166II | GTNNAC | 5 cut(s) | 318, 848, 1301, 1616, 1651 |
| Hpy188I | TCNGA | 5 cut(s) | 12, 183, 855, 1035, 1386 |
| Hpy188III | TCNNGA | 5 cut(s) | 583, 794, 1234, 1481, 1664 |
| Hpy8I | GTNNAC | 5 cut(s) | 318, 848, 1301, 1616, 1651 |
| HpyAV | CCTTC | 7 cut(s) | 276, 362, 475, 636, 661, 1262, 1615 |
| HpyCH4III | ACNGT | 2 cut(s) | 200, 1523 |
| HpyCH4IV | ACGT | 2 cut(s) | 837, 850 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 102, 1454 |
| HpyF3I | CTNAG | 4 cut(s) | 1050, 1383, 1442, 1470 |
| HpySE526I | ACGT | 2 cut(s) | 837, 850 |
| HspAI | GCGC | 1 cut(s) | 1166 |
| Kpn2I | TCCGGA | 1 cut(s) | 793 |
| KspI | CCGCGG | 1 cut(s) | 1276 |
| Kzo9I | GATC | 4 cut(s) | 228, 991, 1035, 1348 |
| LguI | GCTCTTC | 1 cut(s) | 1443 |
| LmnI | GCTCC | 1 cut(s) | 1433 |
| Lsp1109I | GCAGC | 2 cut(s) | 1232, 1543 |
| LweI | GCATC | 6 cut(s) | 463, 873, 1209, 1328, 1456, 1567 |
| MaeI | CTAG | 7 cut(s) | 234, 819, 1130, 1191, 1226, 1673, 1686 |
| MaeII | ACGT | 2 cut(s) | 837, 850 |
| MaeIII | GTNAC | 1 cut(s) | 1216 |
| MalI | GATC | 4 cut(s) | 230, 993, 1037, 1350 |
| MboI | GATC | 4 cut(s) | 228, 991, 1035, 1348 |
| MboII | GAAGA | 7 cut(s) | 409, 490, 1193, 1430, 1529, 1615, 1618 |
| MhlI | GDGCHC | 4 cut(s) | 209, 958, 1438, 1476 |
| MluCI | AATT | 2 cut(s) | 1091, 1388 |
| MlyI | GAGTC | 4 cut(s) | 766, 869, 898, 1362 |
| MmeI | TCCRAC | 1 cut(s) | 1701 |
| Mph1103I | ATGCAT | 3 cut(s) | 1126, 1149, 1343 |
| MroI | TCCGGA | 1 cut(s) | 793 |
| MseI | TTAA | 3 cut(s) | 219, 348, 1284 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1152, 1158, 1406, 1646 |
| MspA1I | CMGCKG | 1 cut(s) | 1275 |
| MspI | CCGG | 5 cut(s) | 326, 794, 1097, 1254, 1629 |
| MspR9I | CCNGG | 5 cut(s) | 98, 259, 1098, 1373, 1629 |
| Mva1269I | GAATGC | 3 cut(s) | 610, 694, 1126 |
| MvaI | CCWGG | 3 cut(s) | 98, 259, 1373 |
| MvnI | CGCG | 1 cut(s) | 1275 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 102, 1454 |
| NciI | CCSGG | 2 cut(s) | 1098, 1629 |
| NdeII | GATC | 4 cut(s) | 228, 991, 1035, 1348 |
| NlaIV | GGNNCC | 1 cut(s) | 1626 |
| NsiI | ATGCAT | 3 cut(s) | 1126, 1149, 1343 |
| NspI | RCATGY | 3 cut(s) | 226, 545, 1045 |
| PceI | AGGCCT | 1 cut(s) | 96 |
| PciI | ACATGT | 2 cut(s) | 222, 1041 |
| PciSI | GCTCTTC | 1 cut(s) | 1443 |
| PctI | GAATGC | 3 cut(s) | 610, 694, 1126 |
| PflFI | GACNNNGTC | 1 cut(s) | 1192 |
| PfoI | TCCNGGA | 1 cut(s) | 1371 |
| PkrI | GCNGC | 4 cut(s) | 610, 1247, 1274, 1558 |
| PleI | GAGTC | 4 cut(s) | 765, 868, 897, 1362 |
| PpsI | GAGTC | 4 cut(s) | 765, 868, 897, 1362 |
| Ppu21I | YACGTR | 1 cut(s) | 838 |
| PscI | ACATGT | 2 cut(s) | 222, 1041 |
| Psp124BI | GAGCTC | 3 cut(s) | 209, 1438, 1476 |
| Psp6I | CCWGG | 3 cut(s) | 96, 257, 1371 |
| PspGI | CCWGG | 3 cut(s) | 96, 257, 1371 |
| PspN4I | GGNNCC | 1 cut(s) | 1626 |
| PspPI | GGNCC | 1 cut(s) | 1624 |
| PstNI | CAGNNNCTG | 2 cut(s) | 10, 892 |
| PsyI | GACNNNGTC | 1 cut(s) | 1192 |
| RsaI | GTAC | 1 cut(s) | 1081 |
| RsaNI | GTAC | 1 cut(s) | 1080 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1152, 1158, 1406, 1646 |
| SacI | GAGCTC | 3 cut(s) | 209, 1438, 1476 |
| SacII | CCGCGG | 1 cut(s) | 1276 |
| SapI | GCTCTTC | 1 cut(s) | 1443 |
| SaqAI | TTAA | 3 cut(s) | 219, 348, 1284 |
| SatI | GCNGC | 4 cut(s) | 609, 1246, 1273, 1557 |
| Sau3AI | GATC | 4 cut(s) | 228, 991, 1035, 1348 |
| Sau96I | GGNCC | 1 cut(s) | 1624 |
| SchI | GAGTC | 4 cut(s) | 766, 869, 898, 1362 |
| ScrFI | CCNGG | 5 cut(s) | 98, 259, 1098, 1373, 1629 |
| SduI | GDGCHC | 4 cut(s) | 209, 958, 1438, 1476 |
| SfaNI | GCATC | 6 cut(s) | 463, 873, 1209, 1328, 1456, 1567 |
| SfcI | CTRYAG | 1 cut(s) | 448 |
| Sfr303I | CCGCGG | 1 cut(s) | 1276 |
| SgrBI | CCGCGG | 1 cut(s) | 1276 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1152, 1158, 1406, 1646 |
| SmlI | CTYRAG | 4 cut(s) | 583, 1479, 1508, 1633 |
| SmoI | CTYRAG | 4 cut(s) | 583, 1479, 1508, 1633 |
| Sse9I | AATT | 2 cut(s) | 1091, 1388 |
| SseBI | AGGCCT | 1 cut(s) | 96 |
| SsiI | CCGC | 9 cut(s) | 266, 329, 608, 775, 1056, 1134, 1214, 1273, 1275 |
| SspI | AATATT | 1 cut(s) | 1488 |
| SspMI | CTAG | 7 cut(s) | 234, 819, 1130, 1191, 1226, 1673, 1686 |
| SstI | GAGCTC | 3 cut(s) | 209, 1438, 1476 |
| StuI | AGGCCT | 1 cut(s) | 96 |
| StyD4I | CCNGG | 5 cut(s) | 96, 257, 1096, 1371, 1627 |
| TaaI | ACNGT | 2 cut(s) | 200, 1523 |
| TaiI | ACGT | 2 cut(s) | 840, 853 |
| TaqI | TCGA | 2 cut(s) | 162, 1038 |
| TasI | AATT | 2 cut(s) | 1091, 1388 |
| TauI | GCSGC | 2 cut(s) | 611, 1275 |
| Tru1I | TTAA | 3 cut(s) | 219, 348, 1284 |
| Tru9I | TTAA | 3 cut(s) | 219, 348, 1284 |
| TscAI | CASTG | 3 cut(s) | 931, 1093, 1528 |
| TseI | GCWGC | 2 cut(s) | 1245, 1556 |
| TspDTI | ATGAA | 6 cut(s) | 371, 507, 665, 1281, 1392, 1616 |
| TspGWI | ACGGA | 1 cut(s) | 1350 |
| TspRI | CASTG | 3 cut(s) | 931, 1093, 1528 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1192 |
| XceI | RCATGY | 3 cut(s) | 226, 545, 1045 |
| XmiI | GTMKAC | 1 cut(s) | 1615 |
| XspI | CTAG | 7 cut(s) | 234, 819, 1130, 1191, 1226, 1673, 1686 |
| Zsp2I | ATGCAT | 3 cut(s) | 1126, 1149, 1343 |