Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028960.1

Orthogroup ID

OG0015307

Physical Location & Seq

Genomic Coordinates Forward (+)

62 .. 1881

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028960.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1669 bp

atgaagggaacgagagaccccaacccttttgaagttgcgtttcacctcaccccacaaaccatagggcctcaatcaaccaaaaacaccaaagacaagaaaccaaagatacgacttgccgtttggactcgtttctctcagaatctcagcttcactaaccttcagctcgctcaaaatgaaatctttatagttgatacaagcagtactatgcattctctgaaatgggttctcttggatttgattggtaaatgcaaaaccttgagttgcttcaagcaaatccatgcaaagactgtaacttcaggcctggcttgcaatgacttggttgccaccaatgttgttaacttcttgggaaaatctgttacccatttcgattacgcttgtgattttctgaaacaagttgattggcgtgtgaactcttttccgtttaacatgttgatctctggctatgctaacggtgaaaatgcaggggaggcggttttggtttatagaaggatagttagagatgggtttatgcctgatatgtttactattccggcggttttgaaatcttgtgttaagtttttggggatgggagagggtagacaggtccatggtgtggttgtgaagatgggttttcagtgggatgtgtatgttcagaactcgcttgtgcatttctatagtgtctgtggtgattgtggtagtgctagtaaggtgtttgatgaaatgcgtgtgagggatgtggtgtcttggactggtttggtgtccgggcatgtgaaggcagggttgtttggtgaggctgtgtctttgtttttgaggatggatgtgaagccgaatgtggcgacttttgttagtgtggttgtggcttgcgggcggatggggtatttgaatgtggggaagggggttcacggattgattttgaagcattcgttggggatggacttggtggtgggcaatgctgttgtggatatgtatgttaagtgtgagagtttgtgtgaggcaaagcgggtttttgatgagcttcccgaaagggacattgtgtcttggactagcttgataagtggatacgtgcagtgtaaacgtccgagggagtcactagatttgttttgcagcatgcagactatgggaatagagcctgataagattatactttccagtgtgctttcagcttgtgccagtcttggggctcttgattatggtagatgggtccatgagtatattgatcgtaagggtatcaaatgggacgtacatattggaacagctatgattgacatgtattccaagtgtggctgtataaatatggcattgcgtactttcagtgaattgccttgcgggaatgtctctacttggaatgcactgctaggtggtttagccatgcatggacatgggcacgaggcactcaaaaagtttgaagaaatgactaggtctggcatcaggccaaatgcagttacttttctagctgtattgacagcttgctgccattctggtttgattgatgaaggccgtgggtactttcatcagatgataagtacacctcataatctctctccaaggttagaacactatggatgcatggttgatctgctctgtcgggctggactcctcgttgaagctaagaaattgataaacactatgccaatgcaacctgatgtgctgatattgggagctcttctaagtgcttgcaaggccaaaaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

556

Amino Acids

61.5

Weight (kDa)

8.62

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38010
fragaria_vesca	FvH4_7g28780
malus_domestica	MD01G1194200.v1.1
prunus_persica	Prupe.2G288100_v2.0.a1
pyrus_communis	pycom01g20450 pycom07g24000
rosa_chinensis	RchiOBHm_Chr1g0376341
rosa_laevigata	RLG00000026610
rosa_multiflora	Rmu_sc0005594.1_g000021 Rmu_sc0016074.1_g000004 Rmu_sc0028960.1_g000001
rosa_roxburghii	Rroxscaffold_4G00282190
rosa_rugosa	Rorug01G0395700
rosa_samantha	Rh1BG370800 Rh1CG383600
rosa_wichuraiana	Rw1G036110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	577
AciI	CCGC	6 cut(s)	470, 533, 843, 847, 979, 1305
AcuI	CTGAAG	2 cut(s)	143, 279
AfaI	GTAC	5 cut(s)	202, 1221, 1285, 1484, 1504
AfiI	CCNNNNNNNGG	2 cut(s)	592, 1155
AflIII	ACRYGT	2 cut(s)	426, 1245
AgsI	TTSAA	7 cut(s)	32, 268, 541, 862, 895, 1385, 1583
AhdI	GACNNNNNGTC	1 cut(s)	1012
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	887, 919
Alw21I	GWGCWC	1 cut(s)	1642
Alw26I	GTCTC	2 cut(s)	9, 1318
AoxI	GGCC	5 cut(s)	65, 298, 1409, 1474, 1659
ApeKI	GCWGC	2 cut(s)	1083, 1449
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AspS9I	GGNCC	3 cut(s)	65, 583, 1180
AsuC2I	CCSGG	1 cut(s)	742
AsuHPI	GGTGA	5 cut(s)	35, 40, 464, 677, 779
AvaII	GGWCC	2 cut(s)	583, 1180
BaeGI	GKGCMC	1 cut(s)	1365
BanII	GRGCYC	2 cut(s)	1162, 1642
BauI	CACGAG	1 cut(s)	1364
Bbv12I	GWGCWC	1 cut(s)	1642
BbvI	GCAGC	2 cut(s)	1095, 1436
BccI	CCATC	7 cut(s)	494, 559, 598, 787, 844, 904, 1170
BceAI	ACGGC	2 cut(s)	101, 1461
BciT130I	CCWGG	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	1031
BcnI	CCSGG	1 cut(s)	742
BcoDI	GTCTC	2 cut(s)	9, 1318
BfaI	CTAG	6 cut(s)	681, 1023, 1070, 1334, 1395, 1430
BfmI	CTRYAG	1 cut(s)	652
BfuI	GTATCC	1 cut(s)	1031
BisI	GCNGC	2 cut(s)	1084, 1450
BlsI	GCNGC	2 cut(s)	1085, 1451
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	302, 742
Bme18I	GGWCC	2 cut(s)	583, 1180
BmeRI	GACNNNNNGTC	1 cut(s)	1012
BmgT120I	GGNCC	3 cut(s)	65, 583, 1180
BmiI	GGNNCC	1 cut(s)	1181
BmrFI	CCNGG	2 cut(s)	302, 742
BmsI	GCATC	2 cut(s)	1413, 1532
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	742
BsaAI	YACGTR	1 cut(s)	1042
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	4 cut(s)	586, 1058, 1477, 1523
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 1155
Bse1I	ACTGG	3 cut(s)	733, 1128, 1149
Bse3DI	GCAATG	3 cut(s)	316, 934, 1277
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	4 cut(s)	586, 1058, 1477, 1523
BseGI	GGATG	8 cut(s)	570, 625, 718, 798, 802, 855, 915, 1547
BseLI	CCNNNNNNNGG	2 cut(s)	592, 1155
BseMI	GCAATG	3 cut(s)	316, 934, 1277
BseMII	CTCAG	2 cut(s)	149, 157
BseNI	ACTGG	3 cut(s)	733, 1128, 1149
BseRI	GAGGAG	1 cut(s)	1565
BseSI	GKGCMC	1 cut(s)	1365
BseXI	GCAGC	2 cut(s)	1095, 1436
BsgI	GTGCAG	1 cut(s)	1064
BshFI	GGCC	5 cut(s)	67, 300, 1411, 1476, 1661
BsiHKAI	GWGCWC	1 cut(s)	1642
BsiSI	CCGG	2 cut(s)	530, 741
BslFI	GGGAC	2 cut(s)	1019, 1229
BslI	CCNNNNNNNGG	2 cut(s)	592, 1155
BsmAI	GTCTC	2 cut(s)	9, 1318
BsmFI	GGGAC	2 cut(s)	1019, 1229
BsmI	GAATGC	3 cut(s)	208, 898, 1330
BsnI	GGCC	5 cut(s)	67, 300, 1411, 1476, 1661
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	1162, 1365, 1642
Bsp143I	GATC	3 cut(s)	432, 1195, 1552
Bsp19I	CCATGG	1 cut(s)	586
BspACI	CCGC	6 cut(s)	470, 533, 843, 847, 979, 1305
BspANI	GGCC	5 cut(s)	67, 300, 1411, 1476, 1661
BspCNI	CTCAG	2 cut(s)	148, 156
BspLI	GGNNCC	1 cut(s)	1181
BspQI	GCTCTTC	1 cut(s)	1647
BspTNI	GGTCTC	1 cut(s)	9
BsrDI	GCAATG	3 cut(s)	316, 934, 1277
BsrI	ACTGG	3 cut(s)	733, 1128, 1149
BssECI	CCNNGG	4 cut(s)	586, 1058, 1477, 1523
BssMI	GATC	3 cut(s)	432, 1195, 1552
BssSI	CACGAG	1 cut(s)	1364
BssT1I	CCWWGG	2 cut(s)	586, 1523
Bst2BI	CACGAG	1 cut(s)	1364
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	289, 452
Bst6I	CTCTTC	1 cut(s)	1647
BstBAI	YACGTR	1 cut(s)	1042
BstC8I	GCNNGC	7 cut(s)	165, 307, 841, 845, 1088, 1447, 1654
BstDEI	CTNAG	4 cut(s)	135, 143, 1587, 1646
BstDSI	CCRYGG	2 cut(s)	586, 1477
BstF5I	GGATG	8 cut(s)	570, 625, 718, 798, 802, 855, 915, 1547
BstKTI	GATC	3 cut(s)	435, 1198, 1555
BstMAI	GTCTC	2 cut(s)	9, 1318
BstMBI	GATC	3 cut(s)	432, 1195, 1552
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 467, 1658
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	4 cut(s)	430, 749, 1090, 1249
BstSCI	CCNGG	2 cut(s)	300, 740
BstSFI	CTRYAG	1 cut(s)	652
BstSLI	GKGCMC	1 cut(s)	1365
BstV1I	GCAGC	2 cut(s)	1095, 1436
BsuI	GTATCC	1 cut(s)	1031
BsuRI	GGCC	5 cut(s)	67, 300, 1411, 1476, 1661
BtgI	CCRYGG	2 cut(s)	586, 1477
BtsCI	GGATG	8 cut(s)	570, 625, 718, 798, 802, 855, 915, 1547
BtsI	GCAGTG	2 cut(s)	1052, 1328
BtsIMutI	CAGTG	5 cut(s)	620, 1052, 1135, 1297, 1328
Cac8I	GCNNGC	7 cut(s)	165, 307, 841, 845, 1088, 1447, 1654
Cfr13I	GGNCC	3 cut(s)	65, 583, 1180
Csp6I	GTAC	5 cut(s)	201, 1220, 1284, 1483, 1503
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviQI	GTAC	5 cut(s)	201, 1220, 1284, 1483, 1503
DdeI	CTNAG	4 cut(s)	135, 143, 1587, 1646
DpnI	GATC	3 cut(s)	434, 1197, 1554
DpnII	GATC	3 cut(s)	432, 1195, 1552
DriI	GACNNNNNGTC	1 cut(s)	1012
Eam1104I	CTCTTC	1 cut(s)	1647
Eam1105I	GACNNNNNGTC	1 cut(s)	1012
EarI	CTCTTC	1 cut(s)	1647
EciI	GGCGGA	1 cut(s)	862
Ecl136II	GAGCTC	1 cut(s)	1640
Eco130I	CCWWGG	2 cut(s)	586, 1523
Eco147I	AGGCCT	1 cut(s)	300
Eco24I	GRGCYC	2 cut(s)	1162, 1642
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	583, 1180
Eco53kI	GAGCTC	1 cut(s)	1640
Eco57I	CTGAAG	2 cut(s)	143, 279
EcoICRI	GAGCTC	1 cut(s)	1640
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	586, 1523
EcoT22I	ATGCAT	3 cut(s)	210, 1353, 1547
EcoT38I	GRGCYC	2 cut(s)	1162, 1642
ErhI	CCWWGG	2 cut(s)	586, 1523
FaqI	GGGAC	2 cut(s)	1019, 1229
FauI	CCCGC	3 cut(s)	836, 972, 1298
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	2 cut(s)	1084, 1450
FokI	GGATG	8 cut(s)	577, 632, 725, 805, 809, 862, 922, 1554
FriOI	GRGCYC	2 cut(s)	1162, 1642
Fsp4HI	GCNGC	2 cut(s)	1084, 1450
FspBI	CTAG	6 cut(s)	681, 1023, 1070, 1334, 1395, 1430
GluI	GCNGC	2 cut(s)	1084, 1450
HaeIII	GGCC	5 cut(s)	67, 300, 1411, 1476, 1661
HapII	CCGG	2 cut(s)	530, 741
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	4 cut(s)	124, 139, 1064, 1572
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	2 cut(s)	530, 741
HphI	GGTGA	5 cut(s)	35, 40, 464, 677, 779
Hpy166II	GTNNAC	7 cut(s)	337, 409, 522, 578, 880, 1052, 1505
Hpy188I	TCNGA	6 cut(s)	138, 216, 387, 633, 1059, 1494
Hpy188III	TCNNGA	2 cut(s)	998, 1163
Hpy8I	GTNNAC	7 cut(s)	337, 409, 522, 578, 880, 1052, 1505
HpyAV	CCTTC	5 cut(s)	167, 480, 745, 865, 1466
HpyCH4III	ACNGT	2 cut(s)	289, 452
HpyCH4IV	ACGT	3 cut(s)	1041, 1054, 1218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 467, 1658
HpyF3I	CTNAG	4 cut(s)	135, 143, 1587, 1646
HpySE526I	ACGT	3 cut(s)	1041, 1054, 1218
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	432, 1195, 1552
LguI	GCTCTTC	1 cut(s)	1647
LmnI	GCTCC	1 cut(s)	1637
Lsp1109I	GCAGC	2 cut(s)	1095, 1436
LweI	GCATC	2 cut(s)	1413, 1532
MaeI	CTAG	6 cut(s)	681, 1023, 1070, 1334, 1395, 1430
MaeII	ACGT	3 cut(s)	1041, 1054, 1218
MaeIII	GTNAC	4 cut(s)	289, 355, 1065, 1420
MalI	GATC	3 cut(s)	434, 1197, 1554
MboI	GATC	3 cut(s)	432, 1195, 1552
MboII	GAAGA	3 cut(s)	613, 1397, 1634
MhlI	GDGCHC	3 cut(s)	1162, 1365, 1642
MluCI	AATT	2 cut(s)	1295, 1592
MlyI	GAGTC	3 cut(s)	118, 1073, 1566
Mph1103I	ATGCAT	3 cut(s)	210, 1353, 1547
MseI	TTAA	4 cut(s)	336, 423, 552, 951
MslI	CAYNNNNRTG	1 cut(s)	1356
MspI	CCGG	2 cut(s)	530, 741
MspR9I	CCNGG	2 cut(s)	302, 742
Mva1269I	GAATGC	3 cut(s)	208, 898, 1330
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	306, 467, 1658
NciI	CCSGG	1 cut(s)	742
NcoI	CCATGG	1 cut(s)	586
NdeII	GATC	3 cut(s)	432, 1195, 1552
NlaIV	GGNNCC	1 cut(s)	1181
NmuCI	GTSAC	1 cut(s)	1065
NsiI	ATGCAT	3 cut(s)	210, 1353, 1547
NspI	RCATGY	4 cut(s)	430, 749, 1090, 1249
PaeI	GCATGC	1 cut(s)	1090
PceI	AGGCCT	1 cut(s)	300
PciI	ACATGT	2 cut(s)	426, 1245
PciSI	GCTCTTC	1 cut(s)	1647
PctI	GAATGC	3 cut(s)	208, 898, 1330
PfeI	GAWTC	1 cut(s)	139
PflFI	GACNNNGTC	1 cut(s)	1396
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	1085, 1451
PleI	GAGTC	3 cut(s)	118, 1072, 1566
PpsI	GAGTC	3 cut(s)	118, 1072, 1566
Ppu21I	YACGTR	1 cut(s)	1042
PscI	ACATGT	2 cut(s)	426, 1245
Psp124BI	GAGCTC	1 cut(s)	1642
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	1181
PspPI	GGNCC	3 cut(s)	65, 583, 1180
PsyI	GACNNNGTC	1 cut(s)	1396
RsaI	GTAC	5 cut(s)	202, 1221, 1285, 1484, 1504
RsaNI	GTAC	5 cut(s)	201, 1220, 1284, 1483, 1503
RseI	CAYNNNNRTG	1 cut(s)	1356
SacI	GAGCTC	1 cut(s)	1642
SapI	GCTCTTC	1 cut(s)	1647
SaqAI	TTAA	4 cut(s)	336, 423, 552, 951
SatI	GCNGC	2 cut(s)	1084, 1450
Sau3AI	GATC	3 cut(s)	432, 1195, 1552
Sau96I	GGNCC	3 cut(s)	65, 583, 1180
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	3 cut(s)	118, 1073, 1566
ScrFI	CCNGG	2 cut(s)	302, 742
SduI	GDGCHC	3 cut(s)	1162, 1365, 1642
SfaNI	GCATC	2 cut(s)	1413, 1532
SfcI	CTRYAG	1 cut(s)	652
SinI	GGWCC	2 cut(s)	583, 1180
SmiMI	CAYNNNNRTG	1 cut(s)	1356
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SphI	GCATGC	1 cut(s)	1090
Sse9I	AATT	2 cut(s)	1295, 1592
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	6 cut(s)	470, 533, 843, 847, 979, 1305
SspMI	CTAG	6 cut(s)	681, 1023, 1070, 1334, 1395, 1430
SstI	GAGCTC	1 cut(s)	1642
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	300, 740
StyI	CCWWGG	2 cut(s)	586, 1523
TaaI	ACNGT	2 cut(s)	289, 452
TaiI	ACGT	3 cut(s)	1044, 1057, 1221
TaqI	TCGA	1 cut(s)	366
TasI	AATT	2 cut(s)	1295, 1592
TatI	WGTACW	2 cut(s)	200, 1502
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	4 cut(s)	336, 423, 552, 951
Tru9I	TTAA	4 cut(s)	336, 423, 552, 951
TscAI	CASTG	5 cut(s)	620, 1052, 1135, 1297, 1335
TseFI	GTSAC	1 cut(s)	1065
TseI	GCWGC	2 cut(s)	1083, 1449
Tsp45I	GTSAC	1 cut(s)	1065
TspDTI	ATGAA	5 cut(s)	17, 189, 711, 1478, 1485
TspGWI	ACGGA	2 cut(s)	408, 897
TspRI	CASTG	5 cut(s)	620, 1052, 1135, 1297, 1335
Tth111I	GACNNNGTC	1 cut(s)	1396
Van91I	CCANNNNNTGG	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	583, 1180
XceI	RCATGY	4 cut(s)	430, 749, 1090, 1249
XmiI	GTMKAC	1 cut(s)	577
XspI	CTAG	6 cut(s)	681, 1023, 1070, 1334, 1395, 1430
ZrmI	AGTACT	1 cut(s)	202
Zsp2I	ATGCAT	3 cut(s)	210, 1353, 1547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.