AT4G38170

FAR1-related sequence

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010639
Physical Location & Seq
Forward (+)
17904532 .. 17906821
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38170.1

Sequence Viewer

Length: 1638 bp
ATGGCTATAATCGCAGTGGCAGAATTAGTGGAAGAAGTAAGCATGAGCAGGGTCGAGCATGTATTGAACTATCTGAAACGTAGGCAGCTCGAGAATCCTGGTTTCTTATATGCAATTGAGGACGATTGTGGGAATGTTTTCTGGGCGGATCCAACTTGCAGGTTGAATTACACCTACTTTGGTGATACCCTAGTCTTTGACACCACCTATAGGAGGGGTAAGAGGTATCAAGTGCCATTTGCTGCCTTCACCGGGTTCAACCATCATGGGCAGCCTGTTCTTTTTGGTTGTGCTCTCATACTCAACGAGTCTGAGTCCTCCTTTGCGTGGCTTTTCCAAACTTGGCTTCAAGCAATGTCTGCTCCCCCTCCTCCTTCTATTACAGTTGAACCAGATCGCCTGATACAGGTTGCTGTTTCTCGAGTTTTCAGTCAAACCCGCCTTCGTTTCAGCCAGCCCCTCATCTTCGAGGAAACTGAGGAGAAACTTGCTCACGTCTTTCAGGCTCATCCTACCTTTGAATCCGAATTTATAAATTGCGTTACTGAGACAGAAACGGCTGCCGAGTTTGAGGCATCTTGGGACTCTATCGTCAGGAGATATTATATGGAGGATAACGACTGGCTCCAGTCCATTTATAATGCTAGACAACAGTGGGTCCGTGTTTTCATCCGAGACACCTTTTATGGAGAGCTGTCTACAAATGAAGGAAGCAGCATTTTGAACTCATTCTTCCAAGGGTTTGTGGATGCATCAACTACAATGCAAATGCTCATAAAACAGTATGAGAAAGCAATTGATAGTTGGCGTGAGAAAGAACTGAAAGCAGATTACGAAGCAACTAACTCTACTCCAGTTATGAAGACGCCCTCTCCCATGGAAAAGCAAGCTGCTAGCCTCTATACAAGGGCAGCATTCATCAAGTTTCAGGAGGAGTTTGTTGAGACCCTTGCAATTCCTGCAAATATAATTAGTGATTCAGGAACTCACACTACTTATCGTGTCGCTAAGTTCGGAGAAGTTCACAAAGGTCATACTGTCAGTTTTGACTCTCTTGAGGTGAAAGCTAATTGCAGCTGTCAAATGTTTGAGTATTCAGGGATTATATGTAGACACATATTGGCGGTGTTCAGTGCCAAAAATGTTCTTGCTCTTCCATCTCGGTATCTACTGAGGCGATGGACCAAAGAAGCAAAGATTAGAGGCACTGAGGAACAACCTGAGTTTTCAAATGGCTGTCAAGAATCTTTAAATCTCTGCTTCAACAGTCTACGCCAAGAAGCAACCAAGTATGTCGAGGAAGGTGCCAAATCTATTCAGATCTATAAAGTTGCAATGGATGCTTTGGATGAAGCTGCCAAGAAGGTTGCTGCTGCAAGTAACAGAACACCTGGAACTAGGCTTCCCAATGGGGAAGCTTACCCGTCCGAGGAAGCTCGAGAAACAGCAAATGCAACGAATCATCCAGGGGGTGAAAAAGAGAGGACGATACTTGAACTGACAGCTGAGTTGGAGAGGACAGGCCAGCGATGTGAAGTTTATCGAGCAAACCTGCTGTCTATTTTGAGAGATATGGAAGAACAGAAGTTTCAGCTATCCCTCAAGGTACAAAATGCTAGACTAAGCTTGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

545

Amino Acids

62.25

Weight (kDa)

5.42

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 64 - 150 3.1e-18 MULE transposase domain
SWIM PF04434 352 - 381 2e-11 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010639)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38170
fragaria_vesca FvH4_2g17132 FvH4_2g17132 FvH4_2g17132
malus_domestica MD05G1144700.v1.1 MD10G1144200.v1.1
prunus_persica Prupe.8G182800_v2.0.a1
pyrus_communis pycom05g13980 pycom10g12410
rosa_chinensis RchiOBHm_Chr6g0281571
rosa_laevigata RLG00000012962
rosa_multiflora Rmu_ssc0000211.1_g000016
rosa_roxburghii Rroxscaffold_7G00186990
rosa_rugosa Rorug06G0141700 Rorug06G0141800
rosa_samantha Rh6AG254200 Rh6BG257200 Rh6CG256500 Rh6DG248300
rosa_wichuraiana Rw6G022070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 533, 639
AasI GACNNNNNNGTC 1 cut(s) 590
Acc36I ACCTGC 2 cut(s) 150, 1560
AccB1I GGYRCC 1 cut(s) 1304
AccI GTMKAC 3 cut(s) 698, 1111, 1270
AciI CCGC 3 cut(s) 146, 439, 1124
AclWI GGATC 2 cut(s) 143, 156
AcsI RAATTY 1 cut(s) 527
AcyI GRCGYC 1 cut(s) 866
AfaI GTAC 1 cut(s) 1608
AfiI CCNNNNNNNGG 6 cut(s) 210, 213, 252, 327, 406, 1429
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 3 cut(s) 97, 1390, 1465
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AloI GAACNNNNNNTCC 2 cut(s) 1387, 1419
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 3 cut(s) 542, 669, 938
AlwI GGATC 2 cut(s) 143, 156
Ama87I CYCGRG 3 cut(s) 89, 420, 1437
AoxI GGCC 1 cut(s) 1522
ApoI RAATTY 1 cut(s) 527
ArsI GACNNNNNNTTYG 2 cut(s) 1541, 1573
Asp700I GAANNNNTTC 2 cut(s) 137, 728
AspS9I GGNCC 2 cut(s) 658, 1182
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 4 cut(s) 194, 241, 1072, 1484
AsuNHI GCTAGC 1 cut(s) 893
AvaI CYCGRG 3 cut(s) 89, 420, 1437
AvaII GGWCC 2 cut(s) 658, 1182
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 1304
BbsI GAAGAC 1 cut(s) 869
Bbv12I GWGCWC 1 cut(s) 295
BccI CCATC 3 cut(s) 270, 1165, 1173
BceAI ACGGC 1 cut(s) 573
BcgI CGANNNNNNTGC 2 cut(s) 1286, 1320
BciT130I CCWGG 3 cut(s) 99, 1392, 1467
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 3 cut(s) 542, 669, 938
BfaI CTAG 5 cut(s) 191, 645, 894, 1398, 1617
BfmI CTRYAG 1 cut(s) 208
BfuAI ACCTGC 2 cut(s) 150, 1560
BglII AGATCT 1 cut(s) 1320
Bme1390I CCNGG 4 cut(s) 99, 253, 1392, 1467
Bme18I GGWCC 2 cut(s) 658, 1182
BmeT110I CYCGRG 3 cut(s) 89, 420, 1437
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 658, 1182
BmiI GGNNCC 4 cut(s) 150, 626, 659, 1306
BmrFI CCNGG 4 cut(s) 99, 253, 1392, 1467
BmsI GCATC 4 cut(s) 584, 739, 761, 1330
BmtI GCTAGC 1 cut(s) 897
BpiI GAAGAC 1 cut(s) 869
BpmI CTGGAG 2 cut(s) 611, 837
BpuEI CTTGAG 2 cut(s) 1076, 1586
BpuMI CCSGG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 866
BsaI GGTCTC 1 cut(s) 938
BsaJI CCNNGG 4 cut(s) 736, 876, 1428, 1466
BsaXI ACNNNNNCTCC 2 cut(s) 856, 886
Bsc4I CCNNNNNNNGG 6 cut(s) 210, 213, 252, 327, 406, 1429
Bse1I ACTGG 3 cut(s) 626, 628, 854
Bse3DI GCAATG 2 cut(s) 360, 1341
BseBI CCWGG 3 cut(s) 99, 1392, 1467
BseDI CCNNGG 4 cut(s) 736, 876, 1428, 1466
BseGI GGATG 6 cut(s) 508, 669, 754, 1345, 1354, 1462
BseLI CCNNNNNNNGG 6 cut(s) 210, 213, 252, 327, 406, 1429
BseMI GCAATG 2 cut(s) 360, 1341
BseMII CTCAG 7 cut(s) 303, 468, 537, 1163, 1200, 1212, 1497
BseNI ACTGG 3 cut(s) 626, 628, 854
BseRI GAGGAG 3 cut(s) 360, 494, 947
BshFI GGCC 1 cut(s) 1524
BshNI GGYRCC 1 cut(s) 1304
BsiHKAI GWGCWC 1 cut(s) 295
BsiHKCI CYCGRG 3 cut(s) 89, 420, 1437
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 6 cut(s) 210, 213, 252, 327, 406, 1429
BsmAI GTCTC 3 cut(s) 542, 669, 938
BsmFI GGGAC 1 cut(s) 596
BsmI GAATGC 1 cut(s) 914
BsnI GGCC 1 cut(s) 1524
Bso31I GGTCTC 1 cut(s) 938
BsoBI CYCGRG 3 cut(s) 89, 420, 1437
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 3 cut(s) 148, 394, 1320
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 3 cut(s) 146, 439, 1124
BspANI GGCC 1 cut(s) 1524
BspCNI CTCAG 7 cut(s) 304, 469, 538, 1164, 1201, 1213, 1498
BspLI GGNNCC 4 cut(s) 150, 626, 659, 1306
BspMI ACCTGC 2 cut(s) 150, 1560
BspOI GCTAGC 1 cut(s) 897
BspPI GGATC 2 cut(s) 143, 156
BspQI GCTCTTC 1 cut(s) 1158
BspT107I GGYRCC 1 cut(s) 1304
BspTNI GGTCTC 1 cut(s) 938
BsrDI GCAATG 2 cut(s) 360, 1341
BsrI ACTGG 3 cut(s) 626, 628, 854
BssECI CCNNGG 4 cut(s) 736, 876, 1428, 1466
BssMI GATC 3 cut(s) 148, 394, 1320
BssNI GRCGYC 1 cut(s) 866
BssT1I CCWWGG 2 cut(s) 736, 876
Bst2UI CCWGG 3 cut(s) 99, 1392, 1467
Bst4CI ACNGT 5 cut(s) 385, 654, 783, 1039, 1268
Bst6I CTCTTC 1 cut(s) 1158
BstACI GRCGYC 1 cut(s) 866
BstAPI GCANNNNNTGC 3 cut(s) 359, 959, 1340
BstC8I GCNNGC 4 cut(s) 455, 888, 895, 1526
BstDEI CTNAG 9 cut(s) 312, 477, 546, 1008, 1172, 1209, 1221, 1506, 1622
BstDSI CCRYGG 1 cut(s) 876
BstENI CCTNNNNNAGG 2 cut(s) 211, 404
BstF5I GGATG 6 cut(s) 508, 669, 754, 1345, 1354, 1462
BstKTI GATC 3 cut(s) 151, 397, 1323
BstMAI GTCTC 3 cut(s) 542, 669, 938
BstMBI GATC 3 cut(s) 148, 394, 1320
BstMWI GCNNNNNNNGC 4 cut(s) 11, 359, 959, 1340
BstNI CCWGG 3 cut(s) 99, 1392, 1467
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 4 cut(s) 97, 251, 1390, 1465
BstSFI CTRYAG 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 869
BstX2I RGATCY 2 cut(s) 148, 1320
BstYI RGATCY 2 cut(s) 148, 1320
BsuRI GGCC 1 cut(s) 1524
BtgI CCRYGG 1 cut(s) 876
BtgZI GCGATG 2 cut(s) 1192, 1543
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 6 cut(s) 508, 669, 754, 1345, 1354, 1462
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 4 cut(s) 21, 659, 1138, 1206
BveI ACCTGC 2 cut(s) 150, 1560
Cac8I GCNNGC 4 cut(s) 455, 888, 895, 1526
Cfr13I GGNCC 2 cut(s) 658, 1182
CseI GACGC 1 cut(s) 874
Csp6I GTAC 1 cut(s) 1607
CviAII CATG 4 cut(s) 43, 59, 266, 877
CviQI GTAC 1 cut(s) 1607
DdeI CTNAG 9 cut(s) 312, 477, 546, 1008, 1172, 1209, 1221, 1506, 1622
DpnI GATC 3 cut(s) 150, 396, 1322
DpnII GATC 3 cut(s) 148, 394, 1320
DraI TTTAAA 1 cut(s) 1251
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
Eam1104I CTCTTC 1 cut(s) 1158
EarI CTCTTC 1 cut(s) 1158
EciI GGCGGA 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 736, 876
Eco31I GGTCTC 1 cut(s) 938
Eco47I GGWCC 2 cut(s) 658, 1182
Eco88I CYCGRG 3 cut(s) 89, 420, 1437
EcoNI CCTNNNNNAGG 2 cut(s) 211, 404
EcoRII CCWGG 3 cut(s) 97, 1390, 1465
EcoT14I CCWWGG 2 cut(s) 736, 876
EcoT22I ATGCAT 1 cut(s) 754
ErhI CCWWGG 2 cut(s) 736, 876
FaeI CATG 4 cut(s) 46, 62, 269, 880
FaqI GGGAC 1 cut(s) 596
FatI CATG 4 cut(s) 42, 58, 265, 876
FauI CCCGC 1 cut(s) 446
FblI GTMKAC 3 cut(s) 698, 1111, 1270
FokI GGATG 6 cut(s) 495, 656, 761, 1352, 1361, 1449
FspBI CTAG 5 cut(s) 191, 645, 894, 1398, 1617
GsuI CTGGAG 2 cut(s) 611, 837
HaeIII GGCC 1 cut(s) 1524
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 874
Hin1I GRCGYC 1 cut(s) 866
Hin1II CATG 4 cut(s) 46, 62, 269, 880
HindIII AAGCTT 2 cut(s) 1416, 1624
HinfI GANTC 9 cut(s) 94, 308, 314, 521, 584, 977, 1049, 1244, 1459
HpaII CCGG 1 cut(s) 252
HphI GGTGA 4 cut(s) 194, 241, 1072, 1484
Hpy166II GTNNAC 4 cut(s) 699, 1024, 1112, 1271
Hpy188I TCNGA 7 cut(s) 75, 313, 526, 674, 1016, 1320, 1429
Hpy188III TCNNGA 8 cut(s) 91, 420, 595, 929, 981, 1055, 1241, 1439
Hpy8I GTNNAC 4 cut(s) 699, 1024, 1112, 1271
HpyAV CCTTC 6 cut(s) 256, 384, 452, 701, 1295, 1357
HpyCH4III ACNGT 5 cut(s) 385, 654, 783, 1039, 1268
HpyCH4IV ACGT 2 cut(s) 79, 495
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 359, 959, 1340
HpyF3I CTNAG 9 cut(s) 312, 477, 546, 1008, 1172, 1209, 1221, 1506, 1622
HpySE526I ACGT 2 cut(s) 79, 495
Hsp92I GRCGYC 1 cut(s) 866
Hsp92II CATG 4 cut(s) 46, 62, 269, 880
Kzo9I GATC 3 cut(s) 148, 394, 1320
LguI GCTCTTC 1 cut(s) 1158
LmnI GCTCC 2 cut(s) 367, 630
LweI GCATC 4 cut(s) 584, 739, 761, 1330
MaeI CTAG 5 cut(s) 191, 645, 894, 1398, 1617
MaeII ACGT 2 cut(s) 79, 495
MaeIII GTNAC 2 cut(s) 541, 1379
MalI GATC 3 cut(s) 150, 396, 1322
MboI GATC 3 cut(s) 148, 394, 1320
MboII GAAGA 6 cut(s) 44, 457, 724, 874, 1145, 1589
MfeI CAATTG 2 cut(s) 114, 795
MflI RGATCY 2 cut(s) 148, 1320
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 9 cut(s) 23, 114, 166, 527, 535, 795, 954, 969, 1069
MlyI GAGTC 4 cut(s) 317, 323, 578, 1043
MmeI TCCRAC 2 cut(s) 176, 1491
Mph1103I ATGCAT 1 cut(s) 754
MroXI GAANNNNTTC 2 cut(s) 137, 728
MseI TTAA 1 cut(s) 1250
MspA1I CMGCKG 2 cut(s) 1077, 1505
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 4 cut(s) 99, 253, 1392, 1467
MunI CAATTG 2 cut(s) 114, 795
Mva1269I GAATGC 1 cut(s) 914
MvaI CCWGG 3 cut(s) 99, 1392, 1467
MwoI GCNNNNNNNGC 4 cut(s) 11, 359, 959, 1340
NciI CCSGG 1 cut(s) 253
NcoI CCATGG 1 cut(s) 876
NdeII GATC 3 cut(s) 148, 394, 1320
NheI GCTAGC 1 cut(s) 893
NlaIII CATG 4 cut(s) 46, 62, 269, 880
NlaIV GGNNCC 4 cut(s) 150, 626, 659, 1306
NmeAIII GCCGAG 1 cut(s) 589
NsiI ATGCAT 1 cut(s) 754
NspI RCATGY 1 cut(s) 62
PaeR7I CTCGAG 3 cut(s) 89, 420, 1437
PciSI GCTCTTC 1 cut(s) 1158
PctI GAATGC 1 cut(s) 914
PdmI GAANNNNTTC 2 cut(s) 137, 728
PfeI GAWTC 5 cut(s) 94, 521, 977, 1244, 1459
PleI GAGTC 4 cut(s) 316, 322, 578, 1043
PpsI GAGTC 4 cut(s) 316, 322, 578, 1043
PsiI TTATAA 2 cut(s) 533, 639
Psp6I CCWGG 3 cut(s) 97, 1390, 1465
PspGI CCWGG 3 cut(s) 97, 1390, 1465
PspN4I GGNNCC 4 cut(s) 150, 626, 659, 1306
PspPI GGNCC 2 cut(s) 658, 1182
PsrI GAACNNNNNNTAC 2 cut(s) 976, 1008
PsuI RGATCY 2 cut(s) 148, 1320
PvuII CAGCTG 2 cut(s) 1077, 1505
RsaI GTAC 1 cut(s) 1608
RsaNI GTAC 1 cut(s) 1607
SapI GCTCTTC 1 cut(s) 1158
SaqAI TTAA 1 cut(s) 1250
Sau3AI GATC 3 cut(s) 148, 394, 1320
Sau96I GGNCC 2 cut(s) 658, 1182
SchI GAGTC 4 cut(s) 317, 323, 578, 1043
ScrFI CCNGG 4 cut(s) 99, 253, 1392, 1467
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 4 cut(s) 584, 739, 761, 1330
SfcI CTRYAG 1 cut(s) 208
Sfr274I CTCGAG 3 cut(s) 89, 420, 1437
SinI GGWCC 2 cut(s) 658, 1182
SlaI CTCGAG 3 cut(s) 89, 420, 1437
SmlI CTYRAG 5 cut(s) 89, 420, 1055, 1437, 1601
SmoI CTYRAG 5 cut(s) 89, 420, 1055, 1437, 1601
Sse9I AATT 9 cut(s) 23, 114, 166, 527, 535, 795, 954, 969, 1069
SsiI CCGC 3 cut(s) 146, 439, 1124
SspMI CTAG 5 cut(s) 191, 645, 894, 1398, 1617
StyD4I CCNGG 4 cut(s) 97, 251, 1390, 1465
StyI CCWWGG 2 cut(s) 736, 876
TaaI ACNGT 5 cut(s) 385, 654, 783, 1039, 1268
TaiI ACGT 2 cut(s) 82, 498
TaqI TCGA 7 cut(s) 54, 90, 421, 468, 1296, 1438, 1543
TasI AATT 9 cut(s) 23, 114, 166, 527, 535, 795, 954, 969, 1069
TfiI GAWTC 5 cut(s) 94, 521, 977, 1244, 1459
Tru1I TTAA 1 cut(s) 1250
Tru9I TTAA 1 cut(s) 1250
TscAI CASTG 4 cut(s) 21, 659, 1138, 1213
TspDTI ATGAA 5 cut(s) 658, 720, 875, 907, 1365
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 4 cut(s) 21, 659, 1138, 1213
VpaK11BI GGWCC 2 cut(s) 658, 1182
XagI CCTNNNNNAGG 2 cut(s) 211, 404
XapI RAATTY 1 cut(s) 527
XceI RCATGY 1 cut(s) 62
XhoI CTCGAG 3 cut(s) 89, 420, 1437
XmiI GTMKAC 3 cut(s) 698, 1111, 1270
XmnI GAANNNNTTC 2 cut(s) 137, 728
XspI CTAG 5 cut(s) 191, 645, 894, 1398, 1617
Zsp2I ATGCAT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.