Rh6DG248300

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010639
Physical Location & Seq
Forward (+)
43611847 .. 43615490
3644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG248300.1

Sequence Viewer

Length: 1650 bp
ATGAGTGGCGGCAGACAGAGGACCCTCGGGGGTGGGGGTCAGCATGTGTTGGACTATCTGAAAAGAATGCAGGCAGAGAATCCTGCTTTCTTTTATGCTGTTCAGAGTGACAGTGATCACTCTAGTGGAAACATATTTTGGGCAGATGCAACTGCAAGGATGAACTATAATTACTTTAAAGATGCTGTTATATTTGACACCACGTACAGGACAAATCACTATAGGGTACCATTTGCCTCATTCATTGGGATTAATCATCATGGGCAGCCGGTGTTGTTTGGATGTGCATTGATCCTCAATGAGTCTGAGTCCTCATTCATATGGCTATTCCAAACTTGGCTTCAAGCAATGTCTGAACGCTACCCTGTCTCTATCACCACTGATCCAGATAGGCTCATACAAGTTGCTGTTGCACAAGTTCTTCCTCACACCCGACATCGTTTCTGCAAGAGCACCATATTTAGAGAAATGAAAGAGAAACTTGGTGGTCTATATACTTCTCATTCGACCTTTGAAACAGAATTTAAGAAATGCATTAATGAAAGCGAGACGATTGATGGTTTTGAGTCACATTGGCATTCACTGCTTCAAAGATACTACATCATGGATAATGAATGGCTTCAGTCAATGTACAATGCCAGGCAACAATGGGTCCCAGTTTACATGAGAGACACCTTTTTCGGAGATTTTGCTGTAAATGAGGGAAGTGGAAGTTTAACTTTGTTTTTTGATGGGTTTGTGACTGAAGCCACGACCATACAGATTTTGCTTAAACAGTATGAGAAGGCTGTAGTTAGTTGGCATGAAAAGGAATTAAAAGCAGATTTTGACACCACTAATACTATGCCCATTCTGAAGACACCATCCCCTATGGAAAAACAAGCTGCAAACCTCTATACTAGGAGAATGTTCAAGAAATTCCAGGAGGAGTTGGTTGAGACTCTTGCAAATCCTGCAACGAAAATTGATGACACAGGAACTGTTGCCACCTATCGAGTGGCTAAATTTGGGGAAGACCACAAAGCACATGCTGTTAATTTCAATTCTTCTGAGGCGAAAGCTAGTTGTAGCTGTCAAATGTTTGAATATTCGGGAATAATCTGTAGGCACATATTAGCAGTTTTTAGAGCGAAGAATGTTCTTACACTTCCTTCTCCATATATATTGAAACGATGGACAAGAAATGCCAAGACTGGAGCTGTGCTGGATGAACGTTCTTCTGATTCACCAAGCAATTCCAGAGAATCTGTAACAGTTAGGTATAACAATCTACGTCAGGAAGCAATTAAATATGTTGAAGAGGGAGCGAAATCTATCCACATTTACAATGTGGCGATGAAAGCTCTTCAGGAGGCCGCTAAGAAAGTTGCTTCTATGAAGAATCAAGGTTCCGGAGCCATGCATGGTAGTTCCCTGGCCAATGGAGGTAGCCAAGAAATGCATGCAACTGAAGAAAATCAAACGGCAGTATTTCAATCTGCGGATGAGAAGGAGAAGAAAATTCATGAATTGTCTGCTGAATTGGACAGCACCAATCAACGATGTGAAGTTTATCGAGCAAATCTGCTTGCTGTTCTGCGAGATATGGAAGAGCAAAAGTTGAAGCTTTCAGTTAAGGTGCAAAGTGCAAGGCTAAGTCTGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

549

Amino Acids

62.53

Weight (kDa)

7.29

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 31 - 142 5.2e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 63 - 154 1.1e-25 MULE transposase domain
SWIM PF04434 350 - 379 2.3e-11 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010639)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38170
fragaria_vesca FvH4_2g17132 FvH4_2g17132 FvH4_2g17132
malus_domestica MD05G1144700.v1.1 MD10G1144200.v1.1
prunus_persica Prupe.8G182800_v2.0.a1
pyrus_communis pycom05g13980 pycom10g12410
rosa_chinensis RchiOBHm_Chr6g0281571
rosa_laevigata RLG00000012962
rosa_multiflora Rmu_ssc0000211.1_g000016
rosa_roxburghii Rroxscaffold_7G00186990
rosa_rugosa Rorug06G0141700 Rorug06G0141800
rosa_samantha Rh6AG254200 Rh6BG257200 Rh6CG256500 Rh6DG248300
rosa_wichuraiana Rw6G022070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 1391
AciI CCGC 3 cut(s) 9, 1356, 1481
AclI AACGTT 1 cut(s) 1213
AclWI GGATC 2 cut(s) 286, 377
AcoI YGGCCR 1 cut(s) 1416
AcsI RAATTY 4 cut(s) 521, 917, 1004, 1500
AcuI CTGAAG 5 cut(s) 605, 765, 875, 1331, 1470
AfaI GTAC 3 cut(s) 206, 228, 632
AfiI CCNNNNNNNGG 1 cut(s) 207
AjnI CCWGG 3 cut(s) 638, 921, 1413
AjuI GAANNNNNNNTTGG 4 cut(s) 121, 153, 324, 356
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 6 cut(s) 884, 1061, 1071, 1199, 1343, 1606
AluI AGCT 6 cut(s) 884, 1061, 1071, 1199, 1343, 1606
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 4 cut(s) 373, 542, 663, 932
AlwI GGATC 2 cut(s) 286, 377
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 1391
AoxI GGCC 2 cut(s) 1353, 1416
ApeKI GCWGC 2 cut(s) 265, 884
ApoI RAATTY 4 cut(s) 521, 917, 1004, 1500
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AseI ATTAAT 2 cut(s) 252, 537
Asp700I GAANNNNTTC 1 cut(s) 618
Asp718I GGTACC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 21, 652
AsuHPI GGTGA 2 cut(s) 367, 1218
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 21, 652
BalI TGGCCA 1 cut(s) 1418
BanI GGYRCC 1 cut(s) 226
BbsI GAAGAC 2 cut(s) 863, 1020
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 2 cut(s) 277, 871
BccI CCATC 4 cut(s) 551, 725, 871, 1167
BceAI ACGGC 1 cut(s) 1479
BciT130I CCWGG 3 cut(s) 640, 923, 1415
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 4 cut(s) 373, 542, 663, 932
BfaI CTAG 3 cut(s) 123, 900, 1062
BfmI CTRYAG 3 cut(s) 220, 789, 1102
BisI GCNGC 4 cut(s) 10, 266, 885, 1356
BlsI GCNGC 4 cut(s) 11, 267, 886, 1357
Bme1390I CCNGG 3 cut(s) 640, 923, 1415
Bme18I GGWCC 2 cut(s) 21, 652
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 21, 652
BmiI GGNNCC 6 cut(s) 23, 228, 653, 654, 1390, 1396
BmrFI CCNGG 3 cut(s) 640, 923, 1415
BmrI ACTGGG 1 cut(s) 650
BmsI GCATC 2 cut(s) 136, 172
BmuI ACTGGG 1 cut(s) 650
BpiI GAAGAC 2 cut(s) 863, 1020
BpmI CTGGAG 1 cut(s) 1215
BsaAI YACGTR 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 25, 1413
BsaWI WCCGGW 1 cut(s) 1391
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 656, 1198
Bse3DI GCAATG 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 1391
BseBI CCWGG 3 cut(s) 640, 923, 1415
BseDI CCNNGG 2 cut(s) 25, 1413
BseGI GGATG 5 cut(s) 165, 287, 863, 1213, 1489
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 297, 1041
BseNI ACTGG 2 cut(s) 656, 1198
BseRI GAGGAG 1 cut(s) 941
BseXI GCAGC 2 cut(s) 277, 871
BshFI GGCC 2 cut(s) 1355, 1418
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 455
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 2 cut(s) 269, 1392
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 4 cut(s) 373, 542, 663, 932
BsmBI CGTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 638
BsmI GAATGC 2 cut(s) 72, 577
BsnI GGCC 2 cut(s) 1355, 1418
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 455
Bsp13I TCCGGA 1 cut(s) 1391
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 3 cut(s) 115, 291, 382
BspACI CCGC 3 cut(s) 9, 1356, 1481
BspANI GGCC 2 cut(s) 1355, 1418
BspCNI CTCAG 2 cut(s) 298, 1042
BspEI TCCGGA 1 cut(s) 1391
BspHI TCATGA 1 cut(s) 1504
BspLI GGNNCC 6 cut(s) 23, 228, 653, 654, 1390, 1396
BspPI GGATC 2 cut(s) 286, 377
BspQI GCTCTTC 2 cut(s) 1350, 1584
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 2 cut(s) 656, 1198
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 25, 1413
BssMI GATC 3 cut(s) 115, 291, 382
Bst2UI CCWGG 3 cut(s) 640, 923, 1415
Bst4CI ACNGT 4 cut(s) 113, 777, 982, 1255
Bst6I CTCTTC 3 cut(s) 1293, 1350, 1584
BstAPI GCANNNNNTGC 2 cut(s) 583, 953
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 72, 1443, 1569
BstDEI CTNAG 4 cut(s) 306, 1050, 1359, 1634
BstF5I GGATG 5 cut(s) 165, 287, 863, 1213, 1489
BstKTI GATC 3 cut(s) 118, 294, 385
BstMAI GTCTC 4 cut(s) 373, 542, 663, 932
BstMBI GATC 3 cut(s) 115, 291, 382
BstMWI GCNNNNNNNGC 3 cut(s) 583, 953, 1340
BstNI CCWGG 3 cut(s) 640, 923, 1415
BstNSI RCATGY 3 cut(s) 47, 1031, 1445
BstSCI CCNGG 3 cut(s) 638, 921, 1413
BstSFI CTRYAG 3 cut(s) 220, 789, 1102
BstV1I GCAGC 2 cut(s) 277, 871
BstV2I GAAGAC 2 cut(s) 863, 1020
BsuRI GGCC 2 cut(s) 1355, 1418
BtgZI GCGATG 1 cut(s) 1349
BtsCI GGATG 5 cut(s) 165, 287, 863, 1213, 1489
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 3 cut(s) 118, 378, 581
Cac8I GCNNGC 3 cut(s) 72, 1443, 1569
CaiI CAGNNNCTG 1 cut(s) 980
CciI TCATGA 1 cut(s) 1504
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 21, 652
Csp6I GTAC 3 cut(s) 205, 227, 631
CviQI GTAC 3 cut(s) 205, 227, 631
DdeI CTNAG 4 cut(s) 306, 1050, 1359, 1634
DpnI GATC 3 cut(s) 117, 293, 384
DpnII GATC 3 cut(s) 115, 291, 382
DraI TTTAAA 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 1416
Eam1104I CTCTTC 3 cut(s) 1293, 1350, 1584
EarI CTCTTC 3 cut(s) 1293, 1350, 1584
Eco47I GGWCC 2 cut(s) 21, 652
Eco57I CTGAAG 5 cut(s) 605, 765, 875, 1331, 1470
Eco88I CYCGRG 1 cut(s) 26
EcoO109I RGGNCCY 2 cut(s) 21, 652
EcoRII CCWGG 3 cut(s) 638, 921, 1413
EcoT22I ATGCAT 3 cut(s) 536, 1404, 1443
Esp3I CGTCTC 1 cut(s) 542
FalI AAGNNNNNCTT 4 cut(s) 465, 497, 703, 735
FaqI GGGAC 1 cut(s) 638
FauNDI CATATG 1 cut(s) 320
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 4 cut(s) 10, 266, 885, 1356
FokI GGATG 5 cut(s) 172, 294, 850, 1220, 1496
Fsp4HI GCNGC 4 cut(s) 10, 266, 885, 1356
FspBI CTAG 3 cut(s) 123, 900, 1062
GluI GCNGC 4 cut(s) 10, 266, 885, 1356
GsuI CTGGAG 1 cut(s) 1215
HaeIII GGCC 2 cut(s) 1355, 1418
HapII CCGG 2 cut(s) 269, 1392
HindIII AAGCTT 1 cut(s) 1604
HinfI GANTC 8 cut(s) 79, 302, 308, 566, 940, 1223, 1244, 1381
HpaII CCGG 2 cut(s) 269, 1392
HphI GGTGA 2 cut(s) 367, 1218
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 9 cut(s) 60, 105, 307, 355, 683, 855, 1051, 1222, 1641
Hpy188III TCNNGA 8 cut(s) 386, 913, 1092, 1239, 1277, 1349, 1392, 1505
Hpy8I GTNNAC 1 cut(s) 661
HpyAV CCTTC 4 cut(s) 778, 1161, 1483, 1636
HpyCH4III ACNGT 4 cut(s) 113, 777, 982, 1255
HpyCH4IV ACGT 3 cut(s) 203, 1213, 1273
HpyF10VI GCNNNNNNNGC 3 cut(s) 583, 953, 1340
HpyF3I CTNAG 4 cut(s) 306, 1050, 1359, 1634
HpySE526I ACGT 3 cut(s) 203, 1213, 1273
KflI GGGWCCC 1 cut(s) 652
Kpn2I TCCGGA 1 cut(s) 1391
KpnI GGTACC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 291, 382
LguI GCTCTTC 2 cut(s) 1350, 1584
LmnI GCTCC 3 cut(s) 1196, 1304, 1394
Lsp1109I GCAGC 2 cut(s) 277, 871
LweI GCATC 2 cut(s) 136, 172
MaeI CTAG 3 cut(s) 123, 900, 1062
MaeII ACGT 3 cut(s) 203, 1213, 1273
MaeIII GTNAC 4 cut(s) 107, 567, 739, 1249
MalI GATC 3 cut(s) 117, 293, 384
MboI GATC 3 cut(s) 115, 291, 382
MhlI GDGCHC 1 cut(s) 455
MlsI TGGCCA 1 cut(s) 1418
MluNI TGGCCA 1 cut(s) 1418
MlyI GAGTC 4 cut(s) 311, 317, 575, 934
MmeI TCCRAC 1 cut(s) 30
Mox20I TGGCCA 1 cut(s) 1418
Mph1103I ATGCAT 3 cut(s) 536, 1404, 1443
MroI TCCGGA 1 cut(s) 1391
MroXI GAANNNNTTC 1 cut(s) 618
MscI TGGCCA 1 cut(s) 1418
MslI CAYNNNNRTG 2 cut(s) 123, 319
Msp20I TGGCCA 1 cut(s) 1418
MspI CCGG 2 cut(s) 269, 1392
MspR9I CCNGG 3 cut(s) 640, 923, 1415
Mva1269I GAATGC 2 cut(s) 72, 577
MvaI CCWGG 3 cut(s) 640, 923, 1415
MwoI GCNNNNNNNGC 3 cut(s) 583, 953, 1340
NdeI CATATG 1 cut(s) 320
NdeII GATC 3 cut(s) 115, 291, 382
NlaIV GGNNCC 6 cut(s) 23, 228, 653, 654, 1390, 1396
NmuCI GTSAC 3 cut(s) 107, 567, 739
NsiI ATGCAT 3 cut(s) 536, 1404, 1443
NspI RCATGY 3 cut(s) 47, 1031, 1445
OliI CACNNNNGTG 1 cut(s) 123
PaeI GCATGC 1 cut(s) 1445
PagI TCATGA 1 cut(s) 1504
PciSI GCTCTTC 2 cut(s) 1350, 1584
PctI GAATGC 2 cut(s) 72, 577
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 4 cut(s) 79, 1223, 1244, 1381
PfoI TCCNGGA 1 cut(s) 921
PkrI GCNGC 4 cut(s) 11, 267, 886, 1357
PleI GAGTC 4 cut(s) 310, 316, 574, 934
PpsI GAGTC 4 cut(s) 310, 316, 574, 934
Ppu21I YACGTR 1 cut(s) 204
PpuMI RGGWCCY 2 cut(s) 21, 652
PshBI ATTAAT 2 cut(s) 252, 537
Psp1406I AACGTT 1 cut(s) 1213
Psp5II RGGWCCY 2 cut(s) 21, 652
Psp6I CCWGG 3 cut(s) 638, 921, 1413
PspGI CCWGG 3 cut(s) 638, 921, 1413
PspN4I GGNNCC 6 cut(s) 23, 228, 653, 654, 1390, 1396
PspPI GGNCC 2 cut(s) 21, 652
PspPPI RGGWCCY 2 cut(s) 21, 652
PsrI GAACNNNNNNTAC 2 cut(s) 155, 187
PstNI CAGNNNCTG 1 cut(s) 980
RsaI GTAC 3 cut(s) 206, 228, 632
RsaNI GTAC 3 cut(s) 205, 227, 631
RseI CAYNNNNRTG 2 cut(s) 123, 319
SapI GCTCTTC 2 cut(s) 1350, 1584
SatI GCNGC 4 cut(s) 10, 266, 885, 1356
Sau3AI GATC 3 cut(s) 115, 291, 382
Sau96I GGNCC 2 cut(s) 21, 652
SchI GAGTC 4 cut(s) 311, 317, 575, 934
ScrFI CCNGG 3 cut(s) 640, 923, 1415
SduI GDGCHC 1 cut(s) 455
SfaNI GCATC 2 cut(s) 136, 172
SfcI CTRYAG 3 cut(s) 220, 789, 1102
SinI GGWCC 2 cut(s) 21, 652
SmiMI CAYNNNNRTG 2 cut(s) 123, 319
SphI GCATGC 1 cut(s) 1445
SsiI CCGC 3 cut(s) 9, 1356, 1481
SspI AATATT 1 cut(s) 1088
SspMI CTAG 3 cut(s) 123, 900, 1062
StyD4I CCNGG 3 cut(s) 638, 921, 1413
TaaI ACNGT 4 cut(s) 113, 777, 982, 1255
TaiI ACGT 3 cut(s) 206, 1216, 1276
TaqI TCGA 3 cut(s) 506, 994, 1555
TatI WGTACW 1 cut(s) 630
TauI GCSGC 2 cut(s) 12, 1358
TfiI GAWTC 4 cut(s) 79, 1223, 1244, 1381
TscAI CASTG 3 cut(s) 118, 385, 588
TseFI GTSAC 3 cut(s) 107, 567, 739
TseI GCWGC 2 cut(s) 265, 884
Tsp45I GTSAC 3 cut(s) 107, 567, 739
TspRI CASTG 3 cut(s) 118, 385, 588
VpaK11BI GGWCC 2 cut(s) 21, 652
VspI ATTAAT 2 cut(s) 252, 537
XapI RAATTY 4 cut(s) 521, 917, 1004, 1500
XceI RCATGY 3 cut(s) 47, 1031, 1445
XcmI CCANNNNNNNNNTGG 1 cut(s) 994
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 3 cut(s) 123, 900, 1062
Zsp2I ATGCAT 3 cut(s) 536, 1404, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.