Rroxscaffold_7G00186990

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010639
Physical Location & Seq
Reverse (-)
26342119 .. 26345842
3724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186990.1

Sequence Viewer

Length: 1035 bp
ATGGCTTCAGTCCATGTACAATGCCAGGCAACAATGGGTCCCAGTTTACATGAGAGACACCTTTTCGGAGATTTTGCTGTAAATGAGGGAAGTGGAAGTTTAACTTTGTTTTTTGATGGGTTTGTGACTGAAGCCACGACCATACAGATTTTGCTTAAACAGTATGAGAAGGCTGTAGTTAGTTGGCATGAAAAGGAATTAAAAGCAGATTTTGACACCACTAATACTATGCCCATTCTGAAGACACCATCCCCTATGGAAAAACAAGCTGCAAACCTCTATACTAGGAGAATGTTCAAGAAATTCCAGGAGGAGTTGGTTGAGACTCTTGCAAATCCTGCAACGAAAATTGATGACACAGGAACTGTTGCCACCTATCGAGTGGCTAAATTTGGGGAAGACCACAAAGCACATGCTGTTAATTTCAAATCTTCTGAGGCGAAAGCTAGTTGTAGCTGTCAAATGTTTGAATATTCGGGAATAATCTGTAGGCACATATTAGCAGTTTTTAGAGCAAAGAATGTTCTTACACTTCCTTCTCCATATATATTGAAACGATGGACAAGAAATGCCAAGACTGGAGCTGTGCAGGATGAAAGTTCTTCTGATTCACCAAGCAATTCCAGAGAATCTGTAACAGTTAGGTATAACAATCTACGTCAGGAAGCAATTAAATATGTTGAAGAGGGAGCGAAATCTATCCACATTTACAATGTGGCGATGAAAGCTCTTCAGGAGGCTGCTAAGAAAGTTGCTTCTATGAAGAATCAAGGTTCTGGAGCCATGCATGGTAGTTCCCTGGCCAATGGAGGTAGCCAAGAAATGCATGCAACTGAAGAAAATCAAACGGCAGTATTTCAATCTGCGGATGAGAAGGAGAAGAAAATTCATGAATTGTCTGCTGAATTGGACAGCACCAATCAACGATGTGAAGTTTATCGAGCAAATCTGCTTGCTGTTCTGCGAGATATGGAAGAGCAAAAGTTGAAGCTTTCAGTTAAGGTGCAAAGTGCAAGGCTAAGTCTGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

344

Amino Acids

38.37

Weight (kDa)

8.15

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 145 - 174 1.6e-11 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010639)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38170
fragaria_vesca FvH4_2g17132 FvH4_2g17132 FvH4_2g17132
malus_domestica MD05G1144700.v1.1 MD10G1144200.v1.1
prunus_persica Prupe.8G182800_v2.0.a1
pyrus_communis pycom05g13980 pycom10g12410
rosa_chinensis RchiOBHm_Chr6g0281571
rosa_laevigata RLG00000012962
rosa_multiflora Rmu_ssc0000211.1_g000016
rosa_roxburghii Rroxscaffold_7G00186990
rosa_rugosa Rorug06G0141700 Rorug06G0141800
rosa_samantha Rh6AG254200 Rh6BG257200 Rh6CG256500 Rh6DG248300
rosa_wichuraiana Rw6G022070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 866
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 3 cut(s) 302, 389, 885
AcuI CTGAAG 4 cut(s) 150, 260, 716, 855
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 7 cut(s) 298, 427, 470, 553, 683, 860, 988
AjnI CCWGG 3 cut(s) 24, 306, 798
AluBI AGCT 6 cut(s) 269, 446, 456, 584, 728, 991
AluI AGCT 6 cut(s) 269, 446, 456, 584, 728, 991
Alw26I GTCTC 2 cut(s) 49, 317
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 1 cut(s) 801
ApeKI GCWGC 2 cut(s) 269, 740
ApoI RAATTY 3 cut(s) 302, 389, 885
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 603
AvaII GGWCC 1 cut(s) 38
BalI TGGCCA 1 cut(s) 803
BbsI GAAGAC 2 cut(s) 248, 405
BbvI GCAGC 2 cut(s) 256, 727
BccI CCATC 3 cut(s) 110, 256, 552
BceAI ACGGC 1 cut(s) 864
BciT130I CCWGG 3 cut(s) 26, 308, 800
BcoDI GTCTC 2 cut(s) 49, 317
BfaI CTAG 2 cut(s) 285, 447
BfmI CTRYAG 2 cut(s) 174, 487
BisI GCNGC 2 cut(s) 270, 741
BlsI GCNGC 2 cut(s) 271, 742
Bme1390I CCNGG 3 cut(s) 26, 308, 800
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 3 cut(s) 39, 40, 781
BmrFI CCNGG 3 cut(s) 26, 308, 800
BmrI ACTGGG 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 248, 405
BpmI CTGGAG 2 cut(s) 600, 798
BsaJI CCNNGG 1 cut(s) 798
Bse1I ACTGG 2 cut(s) 42, 583
BseBI CCWGG 3 cut(s) 26, 308, 800
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 3 cut(s) 248, 598, 874
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 2 cut(s) 42, 583
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 2 cut(s) 256, 727
BsgI GTGCAG 1 cut(s) 608
BshFI GGCC 1 cut(s) 803
BslFI GGGAC 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 49, 317
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 803
Bsp1407I TGTACA 1 cut(s) 16
BspACI CCGC 1 cut(s) 866
BspANI GGCC 1 cut(s) 803
BspCNI CTCAG 1 cut(s) 427
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 3 cut(s) 39, 40, 781
BspQI GCTCTTC 2 cut(s) 735, 969
BsrGI TGTACA 1 cut(s) 16
BsrI ACTGG 2 cut(s) 42, 583
BssECI CCNNGG 1 cut(s) 798
Bst2UI CCWGG 3 cut(s) 26, 308, 800
Bst4CI ACNGT 3 cut(s) 162, 367, 640
Bst6I CTCTTC 3 cut(s) 678, 735, 969
BstAPI GCANNNNNTGC 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 828, 954
BstDEI CTNAG 3 cut(s) 435, 744, 1019
BstF5I GGATG 3 cut(s) 248, 598, 874
BstMAI GTCTC 2 cut(s) 49, 317
BstMWI GCNNNNNNNGC 2 cut(s) 338, 725
BstNI CCWGG 3 cut(s) 26, 308, 800
BstNSI RCATGY 2 cut(s) 416, 830
BstSCI CCNGG 3 cut(s) 24, 306, 798
BstSFI CTRYAG 2 cut(s) 174, 487
BstV1I GCAGC 2 cut(s) 256, 727
BstV2I GAAGAC 2 cut(s) 248, 405
BsuRI GGCC 1 cut(s) 803
BtgZI GCGATG 1 cut(s) 734
BtsCI GGATG 3 cut(s) 248, 598, 874
Cac8I GCNNGC 2 cut(s) 828, 954
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 889
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 17
CviAII CATG 8 cut(s) 14, 50, 188, 413, 784, 788, 827, 890
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 3 cut(s) 435, 744, 1019
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 3 cut(s) 678, 735, 969
EarI CTCTTC 3 cut(s) 678, 735, 969
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 4 cut(s) 150, 260, 716, 855
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 3 cut(s) 24, 306, 798
EcoT22I ATGCAT 2 cut(s) 789, 828
FaeI CATG 8 cut(s) 17, 53, 191, 416, 787, 791, 830, 893
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 1 cut(s) 24
FatI CATG 8 cut(s) 13, 49, 187, 412, 783, 787, 826, 889
Fnu4HI GCNGC 2 cut(s) 270, 741
FokI GGATG 3 cut(s) 235, 605, 881
Fsp4HI GCNGC 2 cut(s) 270, 741
FspBI CTAG 2 cut(s) 285, 447
GluI GCNGC 2 cut(s) 270, 741
GsuI CTGGAG 2 cut(s) 600, 798
HaeIII GGCC 1 cut(s) 803
Hin1II CATG 8 cut(s) 17, 53, 191, 416, 787, 791, 830, 893
HindIII AAGCTT 1 cut(s) 989
HinfI GANTC 4 cut(s) 325, 608, 629, 766
HphI GGTGA 1 cut(s) 603
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 5 cut(s) 68, 240, 436, 607, 1026
Hpy188III TCNNGA 7 cut(s) 298, 477, 624, 662, 734, 777, 890
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 163, 546, 868, 1021
HpyCH4III ACNGT 3 cut(s) 162, 367, 640
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 9 cut(s) 272, 332, 341, 589, 787, 826, 830, 1006, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 725
HpyF3I CTNAG 3 cut(s) 435, 744, 1019
HpySE526I ACGT 1 cut(s) 658
Hsp92II CATG 8 cut(s) 17, 53, 191, 416, 787, 791, 830, 893
KflI GGGWCCC 1 cut(s) 38
LguI GCTCTTC 2 cut(s) 735, 969
LmnI GCTCC 3 cut(s) 581, 689, 779
Lsp1109I GCAGC 2 cut(s) 256, 727
MaeI CTAG 2 cut(s) 285, 447
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 2 cut(s) 124, 634
MlsI TGGCCA 1 cut(s) 803
MluNI TGGCCA 1 cut(s) 803
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 7 cut(s) 79, 287, 304, 430, 679, 730, 803
Mox20I TGGCCA 1 cut(s) 803
Mph1103I ATGCAT 2 cut(s) 789, 828
MscI TGGCCA 1 cut(s) 803
MseI TTAA 6 cut(s) 101, 156, 200, 420, 672, 999
Msp20I TGGCCA 1 cut(s) 803
MspR9I CCNGG 3 cut(s) 26, 308, 800
MvaI CCWGG 3 cut(s) 26, 308, 800
MwoI GCNNNNNNNGC 2 cut(s) 338, 725
NlaIII CATG 8 cut(s) 17, 53, 191, 416, 787, 791, 830, 893
NlaIV GGNNCC 3 cut(s) 39, 40, 781
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 2 cut(s) 789, 828
NspI RCATGY 2 cut(s) 416, 830
PaeI GCATGC 1 cut(s) 830
PagI TCATGA 1 cut(s) 889
PciSI GCTCTTC 2 cut(s) 735, 969
PfeI GAWTC 3 cut(s) 608, 629, 766
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 2 cut(s) 271, 742
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 3 cut(s) 24, 306, 798
PspGI CCWGG 3 cut(s) 24, 306, 798
PspN4I GGNNCC 3 cut(s) 39, 40, 781
PspPI GGNCC 1 cut(s) 38
PspPPI RGGWCCY 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SapI GCTCTTC 2 cut(s) 735, 969
SaqAI TTAA 6 cut(s) 101, 156, 200, 420, 672, 999
SatI GCNGC 2 cut(s) 270, 741
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 3 cut(s) 26, 308, 800
SfcI CTRYAG 2 cut(s) 174, 487
SinI GGWCC 1 cut(s) 38
SphI GCATGC 1 cut(s) 830
SsiI CCGC 1 cut(s) 866
SspI AATATT 1 cut(s) 473
SspMI CTAG 2 cut(s) 285, 447
StyD4I CCNGG 3 cut(s) 24, 306, 798
TaaI ACNGT 3 cut(s) 162, 367, 640
TaiI ACGT 1 cut(s) 661
TaqI TCGA 2 cut(s) 379, 940
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 3 cut(s) 608, 629, 766
Tru1I TTAA 6 cut(s) 101, 156, 200, 420, 672, 999
Tru9I TTAA 6 cut(s) 101, 156, 200, 420, 672, 999
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 269, 740
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 6 cut(s) 204, 609, 737, 776, 878, 906
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 3 cut(s) 302, 389, 885
XceI RCATGY 2 cut(s) 416, 830
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XspI CTAG 2 cut(s) 285, 447
Zsp2I ATGCAT 2 cut(s) 789, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.