FvH4_2g17132

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010639
Physical Location & Seq
Forward (+)
14863387 .. 14866799
3413 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17132.t2

Sequence Viewer

Length: 1650 bp
ATGAGTGGCGGCAGACAGAGGACCCTCGGGGGTGGGGGTCAGCATGTGTTGGACTATCTGAAAAGAATGCAGGCAGAGAATCCTGCTTTCTTTTATGCAGTTCAGAGCGACAGTGATCACTCTGGTGGGAACATATTTTGGGCTGATGCAACAGCGAGGTTGAACTATAATTACTTTAAAGATGCTGTTATATTTGACACTACGTACAGGAAGAATCGCTATAGGGTACCGTTTGCCTCATTCATTGGGATTAATCATCATGGGCAGCCGGTGTTGTTTGGATGTGCCTTGATCCTCAATGAGTCTGAGTCCTCATTCATATGGCTATTCCAGACTTGGCTCCAAGCAATGTCTGGACGACACCCTGTCTCTATCACCACTGATCCAGATAGGCTCATACAAGTTGCTGTCACACAAGTTCTTCCTCATACCCGACACCGTTTCTGCAAGAGCTCCATATTTAGAGAAACAAAAGAGAAACTTGGTGGCCTATACACTTCTCATTCTACCTTTGAAACCGAATTTAAGAAATGCATCAATGAAAGTGAGACGATTGATGATTTCGAGTCACAGTGGCATTCACTGCTTCAAAGATGCTACATCATGGATAATGAATGGCTTCAATCAATGTACAATGCAAGGCAACAATGGGTCCCAGTTTACATGAAAGACACCTTTTTTGGAGATTTTGCTGTCAACGAGGGAAGTGGAAGTTTAACTTTGTTTTTTGATGGGTATGTGACTGAAACCACGACCATACAGATTTTGCTTAAACAGTATGAGAAGGCTGTAGTTAGTTGGCATGAAAAGGAATTAAAGGCAGATTATGACACCACTAATACTATGCCCATTCTGAAGACACCATCCCCTATGGAAAAACAAGCTGCAAACCTCTATACTAGGAGAATGTTCAAGAAATTCCAGGAGGAGTTGGTTGAGACTCTTGCAAATCCTGCAACAAAAATTGATGACAGAGGAACTGTTGCCACCTATCGAGTGGCTAAATTTGGGGAAGACCACAAAGCACATGCTGTTAATTTCAATTCTTCTGAGGCAAAAGCTAGTTGTAGCTGTCAAATGTTTGAATATTCAGGAATAATCTGTAGGCACATATTAGCAGTTTTTAGAGCAAAGAATGTTCTTACACTTCCTTCTCCATATATATTGAAACGATGGACGAGAAATGCAAAGAGTGGAGCCGTGCTGGATGAACATTCTTCTGATTTGCCAAGCAATTCTAGAGAATCTGTAACAGTTAGGTATAATAATCTACGTCAGGAAGCAATTAAATATGTTGAAGAGGGAGCAAAATCTATCCATATTTACAATGTGGCGATGAATGCTCTTCAGGAGGCTTCTAAGAAAGTTGCTTCTATGAAGAATCAAGGTTCCGGAACCATGCATGGTAGTTCCCTGGCCAATGGAGGTAGCCAAGAAATGCAGGCAATTGAAGAAAATCAAACAGCAGTATTTCAATCTGTGGATGAGAAGGAGAAGAAAATTTGCGAATTGTCTGCAGAATTGGACAATACCAATCAACGATGTGAAGTTTATCGAGCAAATCTGCTTGCTGTTCTGCGAGACATGGAAGAGCAAAAATTGAAGCTTTCAGTTAAGGTGCAAAGTGCAAGGCTAAGTCTGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

550

Amino Acids

62.55

Weight (kDa)

7.62

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 63 - 154 6e-26 MULE transposase domain
SWIM PF04434 350 - 379 2.3e-11 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010639)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38170
fragaria_vesca FvH4_2g17132 FvH4_2g17132 FvH4_2g17132
malus_domestica MD05G1144700.v1.1 MD10G1144200.v1.1
prunus_persica Prupe.8G182800_v2.0.a1
pyrus_communis pycom05g13980 pycom10g12410
rosa_chinensis RchiOBHm_Chr6g0281571
rosa_laevigata RLG00000012962
rosa_multiflora Rmu_ssc0000211.1_g000016
rosa_roxburghii Rroxscaffold_7G00186990
rosa_rugosa Rorug06G0141700 Rorug06G0141800
rosa_samantha Rh6AG254200 Rh6BG257200 Rh6CG256500 Rh6DG248300
rosa_wichuraiana Rw6G022070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 1391
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 286, 377
AcoI YGGCCR 1 cut(s) 1416
AcsI RAATTY 4 cut(s) 521, 917, 1004, 1500
AcuI CTGAAG 2 cut(s) 875, 1331
AfaI GTAC 3 cut(s) 206, 228, 632
AhdI GACNNNNNGTC 1 cut(s) 365
AjnI CCWGG 2 cut(s) 921, 1413
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 5 cut(s) 453, 884, 1061, 1071, 1606
AluI AGCT 5 cut(s) 453, 884, 1061, 1071, 1606
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 4 cut(s) 373, 542, 932, 1575
AlwI GGATC 2 cut(s) 286, 377
Ama87I CYCGRG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 1391
AoxI GGCC 2 cut(s) 487, 1416
ApeKI GCWGC 2 cut(s) 265, 884
ApoI RAATTY 4 cut(s) 521, 917, 1004, 1500
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 618
Asp718I GGTACC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 21, 652
AsuHPI GGTGA 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 21, 652
BalI TGGCCA 1 cut(s) 1418
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 455
BbsI GAAGAC 2 cut(s) 863, 1020
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 2 cut(s) 277, 871
BccI CCATC 3 cut(s) 725, 871, 1167
BceAI ACGGC 1 cut(s) 1184
BcgI CGANNNNNNTGC 2 cut(s) 1496, 1530
BciT130I CCWGG 2 cut(s) 923, 1415
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 4 cut(s) 373, 542, 932, 1575
BfaI CTAG 3 cut(s) 900, 1062, 1239
BfmI CTRYAG 4 cut(s) 220, 789, 1102, 1515
BisI GCNGC 3 cut(s) 10, 266, 885
BlsI GCNGC 3 cut(s) 11, 267, 886
Bme1390I CCNGG 2 cut(s) 923, 1415
Bme18I GGWCC 2 cut(s) 21, 652
BmeRI GACNNNNNGTC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 21, 652
BmiI GGNNCC 8 cut(s) 23, 228, 341, 653, 654, 1198, 1390, 1396
BmrFI CCNGG 2 cut(s) 923, 1415
BmrI ACTGGG 1 cut(s) 650
BmsI GCATC 4 cut(s) 136, 172, 543, 584
BmuI ACTGGG 1 cut(s) 650
BpiI GAAGAC 2 cut(s) 863, 1020
BsaAI YACGTR 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 25, 1413
BsaWI WCCGGW 1 cut(s) 1391
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 656
Bse3DI GCAATG 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 1391
BseBI CCWGG 2 cut(s) 923, 1415
BseDI CCNNGG 2 cut(s) 25, 1413
BseGI GGATG 4 cut(s) 287, 863, 1213, 1489
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 297, 1041
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 1 cut(s) 941
BseXI GCAGC 2 cut(s) 277, 871
BshFI GGCC 2 cut(s) 489, 1418
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 455
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 2 cut(s) 269, 1392
BslFI GGGAC 1 cut(s) 638
BsmAI GTCTC 4 cut(s) 373, 542, 932, 1575
BsmBI CGTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 638
BsmI GAATGC 3 cut(s) 72, 577, 1345
BsnI GGCC 2 cut(s) 489, 1418
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 455
Bsp13I TCCGGA 1 cut(s) 1391
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 3 cut(s) 115, 291, 382
BspACI CCGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 489, 1418
BspCNI CTCAG 2 cut(s) 298, 1042
BspEI TCCGGA 1 cut(s) 1391
BspLI GGNNCC 8 cut(s) 23, 228, 341, 653, 654, 1198, 1390, 1396
BspMAI CTGCAG 1 cut(s) 1519
BspPI GGATC 2 cut(s) 286, 377
BspQI GCTCTTC 2 cut(s) 1350, 1584
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 1 cut(s) 656
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 25, 1413
BssMI GATC 3 cut(s) 115, 291, 382
Bst2UI CCWGG 2 cut(s) 923, 1415
Bst4CI ACNGT 7 cut(s) 113, 231, 440, 573, 777, 982, 1255
Bst6I CTCTTC 3 cut(s) 1293, 1350, 1584
BstAPI GCANNNNNTGC 2 cut(s) 583, 953
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 72, 1443, 1569
BstDEI CTNAG 4 cut(s) 306, 1050, 1359, 1634
BstF5I GGATG 4 cut(s) 287, 863, 1213, 1489
BstKTI GATC 3 cut(s) 118, 294, 385
BstMAI GTCTC 4 cut(s) 373, 542, 932, 1575
BstMBI GATC 3 cut(s) 115, 291, 382
BstMWI GCNNNNNNNGC 3 cut(s) 583, 953, 1340
BstNI CCWGG 2 cut(s) 923, 1415
BstNSI RCATGY 2 cut(s) 47, 1031
BstSCI CCNGG 2 cut(s) 921, 1413
BstSFI CTRYAG 4 cut(s) 220, 789, 1102, 1515
BstSNI TACGTA 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 277, 871
BstV2I GAAGAC 2 cut(s) 863, 1020
BsuRI GGCC 2 cut(s) 489, 1418
BtgZI GCGATG 1 cut(s) 1349
BtsCI GGATG 4 cut(s) 287, 863, 1213, 1489
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 4 cut(s) 118, 378, 578, 581
Cac8I GCNNGC 3 cut(s) 72, 1443, 1569
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 21, 652
Csp6I GTAC 3 cut(s) 205, 227, 631
CviAII CATG 9 cut(s) 44, 260, 604, 664, 803, 1028, 1399, 1403, 1585
CviQI GTAC 3 cut(s) 205, 227, 631
DdeI CTNAG 4 cut(s) 306, 1050, 1359, 1634
DpnI GATC 3 cut(s) 117, 293, 384
DpnII GATC 3 cut(s) 115, 291, 382
DraI TTTAAA 1 cut(s) 178
DriI GACNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 1416
Eam1104I CTCTTC 3 cut(s) 1293, 1350, 1584
Eam1105I GACNNNNNGTC 1 cut(s) 365
EarI CTCTTC 3 cut(s) 1293, 1350, 1584
Ecl136II GAGCTC 1 cut(s) 453
Eco105I TACGTA 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 455
Eco47I GGWCC 2 cut(s) 21, 652
Eco53kI GAGCTC 1 cut(s) 453
Eco57I CTGAAG 2 cut(s) 875, 1331
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 453
EcoO109I RGGNCCY 2 cut(s) 21, 652
EcoRII CCWGG 2 cut(s) 921, 1413
EcoT22I ATGCAT 2 cut(s) 536, 1404
EcoT38I GRGCYC 1 cut(s) 455
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 9 cut(s) 47, 263, 607, 667, 806, 1031, 1402, 1406, 1588
FalI AAGNNNNNCTT 4 cut(s) 465, 497, 703, 735
FaqI GGGAC 1 cut(s) 638
FatI CATG 9 cut(s) 43, 259, 603, 663, 802, 1027, 1398, 1402, 1584
FauNDI CATATG 1 cut(s) 320
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 10, 266, 885
FokI GGATG 4 cut(s) 294, 850, 1220, 1496
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 3 cut(s) 10, 266, 885
FspBI CTAG 3 cut(s) 900, 1062, 1239
GluI GCNGC 3 cut(s) 10, 266, 885
HaeIII GGCC 2 cut(s) 489, 1418
HapII CCGG 2 cut(s) 269, 1392
Hin1II CATG 9 cut(s) 47, 263, 607, 667, 806, 1031, 1402, 1406, 1588
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 1604
HinfI GANTC 8 cut(s) 79, 214, 302, 308, 566, 940, 1244, 1381
HpaII CCGG 2 cut(s) 269, 1392
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 2 cut(s) 661, 697
Hpy188I TCNGA 7 cut(s) 60, 105, 307, 855, 1051, 1222, 1641
Hpy188III TCNNGA 9 cut(s) 331, 354, 386, 913, 1092, 1239, 1277, 1349, 1392
Hpy8I GTNNAC 2 cut(s) 661, 697
HpyAV CCTTC 4 cut(s) 778, 1161, 1483, 1636
HpyCH4III ACNGT 7 cut(s) 113, 231, 440, 573, 777, 982, 1255
HpyCH4IV ACGT 2 cut(s) 203, 1273
HpyF10VI GCNNNNNNNGC 3 cut(s) 583, 953, 1340
HpyF3I CTNAG 4 cut(s) 306, 1050, 1359, 1634
HpySE526I ACGT 2 cut(s) 203, 1273
Hsp92II CATG 9 cut(s) 47, 263, 607, 667, 806, 1031, 1402, 1406, 1588
KflI GGGWCCC 1 cut(s) 652
Kpn2I TCCGGA 1 cut(s) 1391
KpnI GGTACC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 291, 382
LguI GCTCTTC 2 cut(s) 1350, 1584
LmnI GCTCC 4 cut(s) 345, 458, 1196, 1304
Lsp1109I GCAGC 2 cut(s) 277, 871
LweI GCATC 4 cut(s) 136, 172, 543, 584
MaeI CTAG 3 cut(s) 900, 1062, 1239
MaeII ACGT 2 cut(s) 203, 1273
MaeIII GTNAC 4 cut(s) 409, 567, 739, 1249
MalI GATC 3 cut(s) 117, 293, 384
MboI GATC 3 cut(s) 115, 291, 382
MfeI CAATTG 1 cut(s) 1446
MhlI GDGCHC 1 cut(s) 455
MlsI TGGCCA 1 cut(s) 1418
MluNI TGGCCA 1 cut(s) 1418
MlyI GAGTC 4 cut(s) 311, 317, 575, 934
MmeI TCCRAC 1 cut(s) 30
Mox20I TGGCCA 1 cut(s) 1418
Mph1103I ATGCAT 2 cut(s) 536, 1404
MroI TCCGGA 1 cut(s) 1391
MroXI GAANNNNTTC 1 cut(s) 618
MscI TGGCCA 1 cut(s) 1418
MseI TTAA 9 cut(s) 177, 252, 525, 716, 771, 815, 1035, 1287, 1614
MslI CAYNNNNRTG 2 cut(s) 123, 319
Msp20I TGGCCA 1 cut(s) 1418
MspI CCGG 2 cut(s) 269, 1392
MspR9I CCNGG 2 cut(s) 923, 1415
MunI CAATTG 1 cut(s) 1446
Mva1269I GAATGC 3 cut(s) 72, 577, 1345
MvaI CCWGG 2 cut(s) 923, 1415
MwoI GCNNNNNNNGC 3 cut(s) 583, 953, 1340
NdeI CATATG 1 cut(s) 320
NdeII GATC 3 cut(s) 115, 291, 382
NlaIII CATG 9 cut(s) 47, 263, 607, 667, 806, 1031, 1402, 1406, 1588
NlaIV GGNNCC 8 cut(s) 23, 228, 341, 653, 654, 1198, 1390, 1396
NmuCI GTSAC 3 cut(s) 409, 567, 739
NsiI ATGCAT 2 cut(s) 536, 1404
NspI RCATGY 2 cut(s) 47, 1031
OliI CACNNNNGTG 1 cut(s) 123
PciSI GCTCTTC 2 cut(s) 1350, 1584
PctI GAATGC 3 cut(s) 72, 577, 1345
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 4 cut(s) 79, 214, 1244, 1381
PfoI TCCNGGA 1 cut(s) 921
PkrI GCNGC 3 cut(s) 11, 267, 886
PleI GAGTC 4 cut(s) 310, 316, 574, 934
PpsI GAGTC 4 cut(s) 310, 316, 574, 934
Ppu21I YACGTR 1 cut(s) 204
PpuMI RGGWCCY 2 cut(s) 21, 652
PshBI ATTAAT 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 455
Psp5II RGGWCCY 2 cut(s) 21, 652
Psp6I CCWGG 2 cut(s) 921, 1413
PspGI CCWGG 2 cut(s) 921, 1413
PspN4I GGNNCC 8 cut(s) 23, 228, 341, 653, 654, 1198, 1390, 1396
PspPI GGNCC 2 cut(s) 21, 652
PspPPI RGGWCCY 2 cut(s) 21, 652
PsrI GAACNNNNNNTAC 2 cut(s) 155, 187
PstI CTGCAG 1 cut(s) 1519
RsaI GTAC 3 cut(s) 206, 228, 632
RsaNI GTAC 3 cut(s) 205, 227, 631
RseI CAYNNNNRTG 2 cut(s) 123, 319
SacI GAGCTC 1 cut(s) 455
SapI GCTCTTC 2 cut(s) 1350, 1584
SaqAI TTAA 9 cut(s) 177, 252, 525, 716, 771, 815, 1035, 1287, 1614
SatI GCNGC 3 cut(s) 10, 266, 885
Sau3AI GATC 3 cut(s) 115, 291, 382
Sau96I GGNCC 2 cut(s) 21, 652
SchI GAGTC 4 cut(s) 311, 317, 575, 934
ScrFI CCNGG 2 cut(s) 923, 1415
SduI GDGCHC 1 cut(s) 455
SfaNI GCATC 4 cut(s) 136, 172, 543, 584
SfcI CTRYAG 4 cut(s) 220, 789, 1102, 1515
SinI GGWCC 2 cut(s) 21, 652
SmiMI CAYNNNNRTG 2 cut(s) 123, 319
SnaBI TACGTA 1 cut(s) 204
SsiI CCGC 1 cut(s) 9
SspI AATATT 1 cut(s) 1088
SspMI CTAG 3 cut(s) 900, 1062, 1239
SstI GAGCTC 1 cut(s) 455
StyD4I CCNGG 2 cut(s) 921, 1413
TaaI ACNGT 7 cut(s) 113, 231, 440, 573, 777, 982, 1255
TaiI ACGT 2 cut(s) 206, 1276
TaqI TCGA 3 cut(s) 564, 994, 1555
TatI WGTACW 1 cut(s) 630
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 4 cut(s) 79, 214, 1244, 1381
Tru1I TTAA 9 cut(s) 177, 252, 525, 716, 771, 815, 1035, 1287, 1614
Tru9I TTAA 9 cut(s) 177, 252, 525, 716, 771, 815, 1035, 1287, 1614
TscAI CASTG 4 cut(s) 118, 385, 578, 588
TseFI GTSAC 3 cut(s) 409, 567, 739
TseI GCWGC 2 cut(s) 265, 884
Tsp45I GTSAC 3 cut(s) 409, 567, 739
TspDTI ATGAA 9 cut(s) 232, 307, 555, 627, 680, 819, 1224, 1352, 1391
TspRI CASTG 4 cut(s) 118, 385, 578, 588
VpaK11BI GGWCC 2 cut(s) 21, 652
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 4 cut(s) 521, 917, 1004, 1500
XbaI TCTAGA 1 cut(s) 1238
XceI RCATGY 2 cut(s) 47, 1031
XcmI CCANNNNNNNNNTGG 2 cut(s) 350, 994
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 3 cut(s) 900, 1062, 1239
Zsp2I ATGCAT 2 cut(s) 536, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.