RLG00000012962

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010639
Physical Location & Seq
Reverse (-)
24357369 .. 24358983
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012962

Sequence Viewer

Length: 1182 bp
ATGAAAGAGAAACTTGGTGGTCTATATACTTCTCATTCGACCTTTGAAACCGAATTTAAGAAATGCATTAATGAAAGCGAGACGATTGATGGTTTTGAGTCACATTGGCATTCACTGCTTCAAAGATACTACATCATGGATAATGAATGGCTTCAGTCAATGTACAATGCCAGGCAACAATGGGTCCCAGTTTACATGAGAGACACCTTTTTCGGAGATTTTGCTGTAAATGAGGGAAGTGGAAGTTTAACTTTGTTTTTTGATGGGTTTGTGACTGAAGCCACGACCATACAGATTTTGCTTAAACAGTATGAGAAGGCTGTAGTTAGTTGGCATGAAAAGGAATTAAAAGCAGATTTTGACACCACTAATACTATGCCCATTCTGAAGACACCATCCCCTATGGAAAAACAAGCTGCAAACCTCTATACTAGGAGAATGTTCAAGAAATTCCAGGAGGAGTTGGTTGAGACTCTTGCAAATCCTGCAACGAAAATTGATGACACAGGAACTGTTGCCACCTATCGAGTGGCTAAATTTGGGGAAGACCACAAAGCACATGCTGTTAATTTCAATTCTTCTGAGGCGAAAGCTAGTTGCAGCTGTCAAATGTTTGAATATTCGGGAATAATCTGTAGGCACATATTAGCAGTTTTTAGAGCAAAGAATGTTCTTACACTTCCTTCTCCATATATATTGAAACGATGGACAAGAAATGCCAAGACTGGAGCTGTGCTGGATGAACGTTCTTCTGATTCACCAAGCACTTCCAGAGAATCTGTAACAGTTAGGTATAACAATCTACGTCAGGAAGCAATTAAATATGTTGAAGAGGGAGCGAAATCTATCCACATTTACAATGTGGCGATGAAAGCTCTTCAGGAGGCTGCTAAGAAAGTTGCTTCTATGAAGAATCAAGGTTCCGGAGCCATGCATGGTAGTTCCCTGGCCAATGGAGGTAGCCAAGAAATGCATGCAACTGAAGAAAATCAAACGGCAGTATTTCAATCGGCGGATGAGAAGGAGAAGAAAATTCATGAATTGTCTGCTGAATTGGACAGCACCAATCAACGATGTGAAGTTTATCGAGCAAATCTGCTTGCTGTTCTGCGAGATATGGAAGAGCAAAAGTTGAAGCTTTCAGTTAAGGTGCAAAGTGCAAGGCTAAGTCTGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

394

Amino Acids

44.64

Weight (kDa)

6.85

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 194 - 223 1.5e-11 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010639)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38170
fragaria_vesca FvH4_2g17132 FvH4_2g17132 FvH4_2g17132
malus_domestica MD05G1144700.v1.1 MD10G1144200.v1.1
prunus_persica Prupe.8G182800_v2.0.a1
pyrus_communis pycom05g13980 pycom10g12410
rosa_chinensis RchiOBHm_Chr6g0281571
rosa_laevigata RLG00000012962
rosa_multiflora Rmu_ssc0000211.1_g000016
rosa_roxburghii Rroxscaffold_7G00186990
rosa_rugosa Rorug06G0141700 Rorug06G0141800
rosa_samantha Rh6AG254200 Rh6BG257200 Rh6CG256500 Rh6DG248300
rosa_wichuraiana Rw6G022070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 923
AciI CCGC 1 cut(s) 1013
AclI AACGTT 1 cut(s) 745
AcoI YGGCCR 1 cut(s) 948
AcsI RAATTY 4 cut(s) 53, 449, 536, 1032
AcuI CTGAAG 5 cut(s) 137, 297, 407, 863, 1002
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 9 cut(s) 47, 122, 445, 574, 617, 700, 830, 1007, 1135
AjnI CCWGG 3 cut(s) 170, 453, 945
AluBI AGCT 6 cut(s) 416, 593, 603, 731, 875, 1138
AluI AGCT 6 cut(s) 416, 593, 603, 731, 875, 1138
Alw26I GTCTC 3 cut(s) 74, 195, 464
AlwNI CAGNNNCTG 1 cut(s) 512
Aor13HI TCCGGA 1 cut(s) 923
AoxI GGCC 1 cut(s) 948
ApeKI GCWGC 3 cut(s) 416, 600, 887
ApoI RAATTY 4 cut(s) 53, 449, 536, 1032
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AseI ATTAAT 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 750
AvaII GGWCC 1 cut(s) 184
BalI TGGCCA 1 cut(s) 950
BbsI GAAGAC 2 cut(s) 395, 552
BbvI GCAGC 3 cut(s) 403, 612, 874
BccI CCATC 4 cut(s) 83, 257, 403, 699
BceAI ACGGC 1 cut(s) 1011
BciT130I CCWGG 3 cut(s) 172, 455, 947
BcoDI GTCTC 3 cut(s) 74, 195, 464
BfaI CTAG 2 cut(s) 432, 594
BfmI CTRYAG 2 cut(s) 321, 634
BisI GCNGC 3 cut(s) 417, 601, 888
BlsI GCNGC 3 cut(s) 418, 602, 889
Bme1390I CCNGG 3 cut(s) 172, 455, 947
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 4 cut(s) 185, 186, 922, 928
BmrFI CCNGG 3 cut(s) 172, 455, 947
BmrI ACTGGG 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 182
BpiI GAAGAC 2 cut(s) 395, 552
BpmI CTGGAG 1 cut(s) 747
BsaJI CCNNGG 1 cut(s) 945
BsaWI WCCGGW 1 cut(s) 923
Bse1I ACTGG 2 cut(s) 188, 730
BseAI TCCGGA 1 cut(s) 923
BseBI CCWGG 3 cut(s) 172, 455, 947
BseDI CCNNGG 1 cut(s) 945
BseGI GGATG 3 cut(s) 395, 745, 1021
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 2 cut(s) 188, 730
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 3 cut(s) 403, 612, 874
BshFI GGCC 1 cut(s) 950
BsiSI CCGG 1 cut(s) 924
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 3 cut(s) 74, 195, 464
BsmBI CGTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 950
Bsp13I TCCGGA 1 cut(s) 923
Bsp1407I TGTACA 1 cut(s) 162
BspACI CCGC 1 cut(s) 1013
BspANI GGCC 1 cut(s) 950
BspCNI CTCAG 1 cut(s) 574
BspEI TCCGGA 1 cut(s) 923
BspHI TCATGA 1 cut(s) 1036
BspLI GGNNCC 4 cut(s) 185, 186, 922, 928
BspQI GCTCTTC 2 cut(s) 882, 1116
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 2 cut(s) 188, 730
BssECI CCNNGG 1 cut(s) 945
Bst2UI CCWGG 3 cut(s) 172, 455, 947
Bst4CI ACNGT 3 cut(s) 309, 514, 787
Bst6I CTCTTC 3 cut(s) 825, 882, 1116
BstAPI GCANNNNNTGC 2 cut(s) 115, 485
BstAUI TGTACA 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 975, 1101
BstDEI CTNAG 3 cut(s) 582, 891, 1166
BstF5I GGATG 3 cut(s) 395, 745, 1021
BstMAI GTCTC 3 cut(s) 74, 195, 464
BstMWI GCNNNNNNNGC 3 cut(s) 115, 485, 872
BstNI CCWGG 3 cut(s) 172, 455, 947
BstNSI RCATGY 2 cut(s) 563, 977
BstSCI CCNGG 3 cut(s) 170, 453, 945
BstSFI CTRYAG 2 cut(s) 321, 634
BstV1I GCAGC 3 cut(s) 403, 612, 874
BstV2I GAAGAC 2 cut(s) 395, 552
BsuRI GGCC 1 cut(s) 950
BtgZI GCGATG 1 cut(s) 881
BtsCI GGATG 3 cut(s) 395, 745, 1021
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 975, 1101
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 1036
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 163
CviAII CATG 8 cut(s) 136, 196, 335, 560, 931, 935, 974, 1037
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 3 cut(s) 582, 891, 1166
EaeI YGGCCR 1 cut(s) 948
Eam1104I CTCTTC 3 cut(s) 825, 882, 1116
EarI CTCTTC 3 cut(s) 825, 882, 1116
EciI GGCGGA 1 cut(s) 1028
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 5 cut(s) 137, 297, 407, 863, 1002
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 170, 453, 945
EcoT22I ATGCAT 3 cut(s) 68, 936, 975
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 8 cut(s) 139, 199, 338, 563, 934, 938, 977, 1040
FalI AAGNNNNNCTT 3 cut(s) 29, 235, 267
FaqI GGGAC 1 cut(s) 170
FatI CATG 8 cut(s) 135, 195, 334, 559, 930, 934, 973, 1036
Fnu4HI GCNGC 3 cut(s) 417, 601, 888
FokI GGATG 3 cut(s) 382, 752, 1028
Fsp4HI GCNGC 3 cut(s) 417, 601, 888
FspBI CTAG 2 cut(s) 432, 594
GluI GCNGC 3 cut(s) 417, 601, 888
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 1 cut(s) 950
HapII CCGG 1 cut(s) 924
Hin1II CATG 8 cut(s) 139, 199, 338, 563, 934, 938, 977, 1040
HindIII AAGCTT 1 cut(s) 1136
HinfI GANTC 5 cut(s) 98, 472, 755, 776, 913
HpaII CCGG 1 cut(s) 924
HphI GGTGA 1 cut(s) 750
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 5 cut(s) 215, 387, 583, 754, 1173
Hpy188III TCNNGA 7 cut(s) 445, 624, 771, 809, 881, 924, 1037
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 4 cut(s) 310, 693, 1015, 1168
HpyCH4III ACNGT 3 cut(s) 309, 514, 787
HpyCH4IV ACGT 2 cut(s) 745, 805
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 485, 872
HpyF3I CTNAG 3 cut(s) 582, 891, 1166
HpySE526I ACGT 2 cut(s) 745, 805
Hsp92II CATG 8 cut(s) 139, 199, 338, 563, 934, 938, 977, 1040
KflI GGGWCCC 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 923
LguI GCTCTTC 2 cut(s) 882, 1116
LmnI GCTCC 3 cut(s) 728, 836, 926
Lsp1109I GCAGC 3 cut(s) 403, 612, 874
MaeI CTAG 2 cut(s) 432, 594
MaeII ACGT 2 cut(s) 745, 805
MaeIII GTNAC 3 cut(s) 99, 271, 781
MlsI TGGCCA 1 cut(s) 950
MluNI TGGCCA 1 cut(s) 950
MlyI GAGTC 2 cut(s) 107, 466
MnlI CCTC 7 cut(s) 226, 434, 451, 577, 826, 877, 950
Mox20I TGGCCA 1 cut(s) 950
Mph1103I ATGCAT 3 cut(s) 68, 936, 975
MroI TCCGGA 1 cut(s) 923
MroXI GAANNNNTTC 1 cut(s) 150
MscI TGGCCA 1 cut(s) 950
MseI TTAA 8 cut(s) 57, 69, 248, 303, 347, 567, 819, 1146
Msp20I TGGCCA 1 cut(s) 950
MspA1I CMGCKG 1 cut(s) 603
MspI CCGG 1 cut(s) 924
MspR9I CCNGG 3 cut(s) 172, 455, 947
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 3 cut(s) 172, 455, 947
MwoI GCNNNNNNNGC 3 cut(s) 115, 485, 872
NlaIII CATG 8 cut(s) 139, 199, 338, 563, 934, 938, 977, 1040
NlaIV GGNNCC 4 cut(s) 185, 186, 922, 928
NmuCI GTSAC 2 cut(s) 99, 271
NsiI ATGCAT 3 cut(s) 68, 936, 975
NspI RCATGY 2 cut(s) 563, 977
PaeI GCATGC 1 cut(s) 977
PagI TCATGA 1 cut(s) 1036
PciSI GCTCTTC 2 cut(s) 882, 1116
PctI GAATGC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 3 cut(s) 755, 776, 913
PfoI TCCNGGA 1 cut(s) 453
PkrI GCNGC 3 cut(s) 418, 602, 889
PleI GAGTC 2 cut(s) 106, 466
PpsI GAGTC 2 cut(s) 106, 466
PpuMI RGGWCCY 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 745
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 3 cut(s) 170, 453, 945
PspGI CCWGG 3 cut(s) 170, 453, 945
PspN4I GGNNCC 4 cut(s) 185, 186, 922, 928
PspPI GGNCC 1 cut(s) 184
PspPPI RGGWCCY 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 512
PvuII CAGCTG 1 cut(s) 603
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SapI GCTCTTC 2 cut(s) 882, 1116
SaqAI TTAA 8 cut(s) 57, 69, 248, 303, 347, 567, 819, 1146
SatI GCNGC 3 cut(s) 417, 601, 888
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 2 cut(s) 107, 466
ScrFI CCNGG 3 cut(s) 172, 455, 947
SfcI CTRYAG 2 cut(s) 321, 634
SinI GGWCC 1 cut(s) 184
SphI GCATGC 1 cut(s) 977
SsiI CCGC 1 cut(s) 1013
SspI AATATT 1 cut(s) 620
SspMI CTAG 2 cut(s) 432, 594
StyD4I CCNGG 3 cut(s) 170, 453, 945
TaaI ACNGT 3 cut(s) 309, 514, 787
TaiI ACGT 2 cut(s) 748, 808
TaqI TCGA 3 cut(s) 38, 526, 1087
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 3 cut(s) 755, 776, 913
Tru1I TTAA 8 cut(s) 57, 69, 248, 303, 347, 567, 819, 1146
Tru9I TTAA 8 cut(s) 57, 69, 248, 303, 347, 567, 819, 1146
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 2 cut(s) 99, 271
TseI GCWGC 3 cut(s) 416, 600, 887
Tsp45I GTSAC 2 cut(s) 99, 271
TspDTI ATGAA 9 cut(s) 17, 87, 159, 351, 756, 884, 923, 1025, 1053
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 184
VspI ATTAAT 1 cut(s) 69
XapI RAATTY 4 cut(s) 53, 449, 536, 1032
XceI RCATGY 2 cut(s) 563, 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 2 cut(s) 432, 594
Zsp2I ATGCAT 3 cut(s) 68, 936, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.