Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013867

Physical Location & Seq

Genomic Coordinates Forward (+)

18034131 .. 18035922

Gene Structure 1792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGTGTTCTTGATCATGTCTCTGAAATGTTTGACTGCTCTCATGGTCACAAGATTAAAAAGCGCAAACAGTTGCAGACGGTGGAGATTAAAGTGAAAATGGACTGCGAAGGTTGCGAGCGGAAAGTGCGGCGTTCTGTCGAAGGCATGAAGGGTGTGTCTTCTGTGACGTTGGAGCCCAAAGCCCATAAAGTCACTGTAGTCGGCTACGTCGATCCCAACAAGGTGGTGGCTCGAATGTCTCACAGGACCGGCAAGAAAGTCGAGCTCTGGCCATATGTGCCCTACGACGTGGTCGCTCATCCTTACGCTGCCGGTGTCTACGACAAGAAGGCACCCTCCGGTTATGTCCGAAGAGTCGACGACCCCGGAGTGTCGCAGCTGGCTCGTGCTAGCTCCACCGAGGTCCGCTACACCACTGCATTTAGCGACGAGAACCCGGCGGCTTGTGTGGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0009987 GO:0010286 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0032791 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046870 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

HMA

Protein Analysis

153

Amino Acids

17.02

Weight (kDa)

9.26

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	31 - 87	2.4e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38580 AT4G38580
fragaria_vesca	FvH4_2g01160
malus_domestica	MD05G1121800.v1.1 MD10G1124400.v1.1
prunus_persica	Prupe.8G165600_v2.0.a1
pyrus_communis	pycom05g11580
rosa_chinensis	RchiOBHm_Chr6g0251781
rosa_laevigata	RLG00000015430
rosa_multiflora	Rmu_ssc0000213.1_g000113
rosa_roxburghii	Rroxscaffold_7G00216390
rosa_rugosa	Rorug05G0503900
rosa_samantha	Rh6AG014700 Rh6BG013100 Rh6CG010100 Rh6DG011300
rosa_wichuraiana	Rw6G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AccBSI	CCGCTC	1 cut(s)	121
AccI	GTMKAC	2 cut(s)	321, 360
AciI	CCGC	4 cut(s)	121, 130, 409, 443
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	292
AluBI	AGCT	3 cut(s)	268, 382, 396
AluI	AGCT	3 cut(s)	268, 382, 396
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	25, 246
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	311, 379
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	249, 406
AsuC2I	CCSGG	2 cut(s)	369, 440
AsuNHI	GCTAGC	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	249, 406
BaeGI	GKGCMC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	2 cut(s)	180, 270
BauI	CACGAG	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	298, 391
BcgI	CGANNNNNNTGC	4 cut(s)	244, 278, 368, 402
BclI	TGATCA	1 cut(s)	13
BcnI	CCSGG	2 cut(s)	369, 440
BcoDI	GTCTC	2 cut(s)	25, 246
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	4 cut(s)	131, 312, 380, 444
BlsI	GCNGC	4 cut(s)	132, 313, 381, 445
Bme1390I	CCNGG	2 cut(s)	369, 440
Bme18I	GGWCC	2 cut(s)	249, 406
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	249, 406
BmiI	GGNNCC	2 cut(s)	177, 336
BmrFI	CCNGG	2 cut(s)	369, 440
BmtI	GCTAGC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	153
BpuMI	CCSGG	2 cut(s)	369, 440
BsaJI	CCNNGG	2 cut(s)	367, 402
BsaWI	WCCGGW	1 cut(s)	341
Bse118I	RCCGGY	2 cut(s)	251, 314
BseDI	CCNNGG	2 cut(s)	367, 402
BseGI	GGATG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	298, 391
BshFI	GGCC	1 cut(s)	274
BshNI	GGYRCC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	5 cut(s)	252, 315, 342, 369, 440
BsmAI	GTCTC	2 cut(s)	25, 246
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	3 cut(s)	180, 270, 285
Bsp143I	GATC	2 cut(s)	13, 214
BspACI	CCGC	4 cut(s)	121, 130, 409, 443
BspANI	GGCC	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	177, 336
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	121
BsrFI	RCCGGY	2 cut(s)	251, 314
BssAI	RCCGGY	2 cut(s)	251, 314
BssECI	CCNNGG	2 cut(s)	367, 402
BssMI	GATC	2 cut(s)	13, 214
BssSI	CACGAG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	72, 82, 199
Bst6I	CTCTTC	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	119, 384, 394
BstF5I	GGATG	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	2 cut(s)	16, 217
BstMAI	GTCTC	2 cut(s)	25, 246
BstMBI	GATC	2 cut(s)	13, 214
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 127, 280
BstSCI	CCNGG	2 cut(s)	367, 438
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	298, 391
BstV2I	GAAGAC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	195, 417
Cac8I	GCNNGC	3 cut(s)	119, 384, 394
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	2 cut(s)	251, 314
Cfr13I	GGNCC	2 cut(s)	249, 406
CviAII	CATG	4 cut(s)	17, 44, 148, 457
DpnI	GATC	2 cut(s)	15, 216
DpnII	GATC	2 cut(s)	13, 214
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	180, 270
Eco47I	GGWCC	2 cut(s)	249, 406
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoT38I	GRGCYC	2 cut(s)	180, 270
FaeI	CATG	4 cut(s)	20, 47, 151, 460
FaiI	YATR	8 cut(s)	18, 45, 149, 189, 277, 279, 348, 458
FatI	CATG	4 cut(s)	16, 43, 147, 456
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	13
FblI	GTMKAC	2 cut(s)	321, 360
Fnu4HI	GCNGC	4 cut(s)	131, 312, 380, 444
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	2 cut(s)	180, 270
Fsp4HI	GCNGC	4 cut(s)	131, 312, 380, 444
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	4 cut(s)	131, 312, 380, 444
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	5 cut(s)	252, 315, 342, 369, 440
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	20, 47, 151, 460
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	357
HpaII	CCGG	5 cut(s)	252, 315, 342, 369, 440
Hpy166II	GTNNAC	2 cut(s)	322, 361
Hpy188I	TCNGA	2 cut(s)	25, 353
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	322, 361
Hpy99I	CGWCG	4 cut(s)	215, 293, 365, 434
HpyAV	CCTTC	4 cut(s)	104, 137, 145, 325
HpyCH4III	ACNGT	3 cut(s)	72, 82, 199
HpyCH4IV	ACGT	3 cut(s)	170, 210, 291
HpyCH4V	TGCA	2 cut(s)	76, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 127, 280
HpySE526I	ACGT	3 cut(s)	170, 210, 291
Hsp92II	CATG	4 cut(s)	20, 47, 151, 460
HspAI	GCGC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	13, 214
LmnI	GCTCC	2 cut(s)	175, 401
LpnPI	CCDG	8 cut(s)	232, 256, 265, 328, 355, 368, 382, 453
Lsp1109I	GCAGC	2 cut(s)	298, 391
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	3 cut(s)	170, 210, 291
MaeIII	GTNAC	3 cut(s)	47, 166, 193
MalI	GATC	2 cut(s)	15, 216
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	2 cut(s)	13, 214
MboII	GAAGA	2 cut(s)	153, 366
MhlI	GDGCHC	3 cut(s)	180, 270, 285
MlsI	TGGCCA	1 cut(s)	274
MluNI	TGGCCA	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	349, 397
Mox20I	TGGCCA	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	274
MseI	TTAA	2 cut(s)	57, 90
Msp20I	TGGCCA	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	5 cut(s)	252, 315, 342, 369, 440
MspR9I	CCNGG	2 cut(s)	369, 440
MwoI	GCNNNNNNNGC	3 cut(s)	114, 127, 280
NciI	CCSGG	2 cut(s)	369, 440
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	2 cut(s)	13, 214
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	4 cut(s)	20, 47, 151, 460
NlaIV	GGNNCC	2 cut(s)	177, 336
NmuCI	GTSAC	3 cut(s)	47, 166, 193
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	4 cut(s)	132, 313, 381, 445
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	177, 336
PspPI	GGNCC	2 cut(s)	249, 406
PsyI	GACNNNGTC	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	57, 90
SatI	GCNGC	4 cut(s)	131, 312, 380, 444
Sau3AI	GATC	2 cut(s)	13, 214
Sau96I	GGNCC	2 cut(s)	249, 406
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	369, 440
SduI	GDGCHC	3 cut(s)	180, 270, 285
SetI	ASST	9 cut(s)	115, 173, 213, 228, 270, 294, 384, 398, 408
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	249, 406
SsiI	CCGC	4 cut(s)	121, 130, 409, 443
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	367, 438
TaaI	ACNGT	3 cut(s)	72, 82, 199
TaiI	ACGT	3 cut(s)	173, 213, 294
TaqI	TCGA	5 cut(s)	141, 213, 235, 264, 360
TauI	GCSGC	2 cut(s)	133, 446
Tru1I	TTAA	2 cut(s)	57, 90
Tru9I	TTAA	2 cut(s)	57, 90
TscAI	CASTG	2 cut(s)	202, 424
TseFI	GTSAC	3 cut(s)	47, 166, 193
TseI	GCWGC	2 cut(s)	311, 379
Tsp45I	GTSAC	3 cut(s)	47, 166, 193
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	202, 424
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	249, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	321, 360
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.