Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013867

Physical Location & Seq

Genomic Coordinates Reverse (-)

17200504 .. 17201852

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G165600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGTGCTCTAGATCATCTCTCAGATCTCTTTGATTGCTCAGGTGGGAGTTCCAGGCACAGGAAACGCAAGCAATTCCAGACGGTGGAGATCAAGGTGAAGATGGACTGCGAAGGATGCGAGAGGAAGGTGAGGAGATCTGTGGAGGGGATGAAAGGCGTGACGCAAGTGACCGTGGAGCGCAAGGCCCACAAGCTCACAGTCGTTGGATACGTGGACCCGGGCAAGGTGCTGGCACGTGTCGCACATCGGACGGGCAAGAAGGTGGAGTTCTGGCCATACGTCCCGTACGACGTCGTTGCCCACCCGTACGCCGCTGGGGTGTACGACAAGAAGGCTCCGTCCGGGTACGTGAGGAACGTGGAGGACCCGCAGCTCCGGAACCTCGCACGTGCGAGCTCCACGGAAGTGCGTTACACCACGGCATTCAGTGATGAAAACCCAGCTGCCTGTGCTGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0009987 GO:0010286 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0032791 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046870 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

155

Amino Acids

17.19

Weight (kDa)

9.41

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38580 AT4G38580
fragaria_vesca	FvH4_2g01160
malus_domestica	MD05G1121800.v1.1 MD10G1124400.v1.1
prunus_persica	Prupe.8G165600_v2.0.a1
pyrus_communis	pycom05g11580
rosa_chinensis	RchiOBHm_Chr6g0251781
rosa_laevigata	RLG00000015430
rosa_multiflora	Rmu_ssc0000213.1_g000113
rosa_roxburghii	Rroxscaffold_7G00216390
rosa_rugosa	Rorug05G0503900
rosa_samantha	Rh6AG014700 Rh6BG013100 Rh6CG010100 Rh6DG011300
rosa_wichuraiana	Rw6G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccIII	TCCGGA	1 cut(s)	378
AciI	CCGC	2 cut(s)	315, 371
AcoI	YGGCCR	1 cut(s)	275
AcvI	CACGTG	2 cut(s)	239, 392
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	4 cut(s)	290, 311, 326, 350
AfiI	CCNNNNNNNGG	3 cut(s)	60, 85, 226
AflIII	ACRYGT	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	53
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	4 cut(s)	196, 376, 399, 446
AluI	AGCT	4 cut(s)	196, 376, 399, 446
Alw21I	GWGCWC	2 cut(s)	10, 401
Ama87I	CYCGRG	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	378
AoxI	GGCC	2 cut(s)	186, 275
ApeKI	GCWGC	2 cut(s)	373, 446
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	3 cut(s)	187, 217, 367
AsuC2I	CCSGG	3 cut(s)	221, 222, 346
AsuHPI	GGTGA	2 cut(s)	109, 142
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	217, 367
BalI	TGGCCA	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	401
BbrPI	CACGTG	2 cut(s)	239, 392
Bbv12I	GWGCWC	2 cut(s)	10, 401
BbvI	GCAGC	2 cut(s)	385, 433
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	438
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	1 cut(s)	55
BciVI	GTATCC	1 cut(s)	203
BcnI	CCSGG	3 cut(s)	221, 222, 346
BfaI	CTAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	203
BglII	AGATCT	2 cut(s)	25, 137
BisI	GCNGC	3 cut(s)	315, 374, 447
BlsI	GCNGC	3 cut(s)	316, 375, 448
Bme1390I	CCNGG	4 cut(s)	55, 221, 222, 346
Bme18I	GGWCC	2 cut(s)	217, 367
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	187, 217, 367
BmiI	GGNNCC	4 cut(s)	219, 339, 369, 383
BmrFI	CCNGG	4 cut(s)	55, 221, 222, 346
BmsI	GCATC	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	40
BpuMI	CCSGG	3 cut(s)	221, 222, 346
BsaAI	YACGTR	4 cut(s)	214, 239, 352, 392
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	174, 220, 402, 420
BsaWI	WCCGGW	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 85, 226
BseAI	TCCGGA	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	4 cut(s)	174, 220, 402, 420
BseGI	GGATG	2 cut(s)	122, 156
BseLI	CCNNNNNNNGG	3 cut(s)	60, 85, 226
BseMII	CTCAG	2 cut(s)	36, 54
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	385, 433
BseYI	CCCAGC	2 cut(s)	317, 442
BshFI	GGCC	2 cut(s)	188, 277
BsiHKAI	GWGCWC	2 cut(s)	10, 401
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	3 cut(s)	221, 345, 379
BsiWI	CGTACG	2 cut(s)	288, 309
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	3 cut(s)	60, 85, 226
BsmFI	GGGAC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	188, 277
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	10, 401
Bsp13I	TCCGGA	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	13, 25, 90, 137
BspACI	CCGC	2 cut(s)	315, 371
BspANI	GGCC	2 cut(s)	188, 277
BspCNI	CTCAG	2 cut(s)	35, 53
BspEI	TCCGGA	1 cut(s)	378
BspLI	GGNNCC	4 cut(s)	219, 339, 369, 383
BssECI	CCNNGG	4 cut(s)	174, 220, 402, 420
BssMI	GATC	4 cut(s)	13, 25, 90, 137
BssNI	GRCGYC	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	3 cut(s)	85, 175, 202
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	4 cut(s)	214, 239, 352, 392
BstC8I	GCNNGC	3 cut(s)	71, 234, 397
BstDEI	CTNAG	2 cut(s)	22, 40
BstDSI	CCRYGG	3 cut(s)	174, 402, 420
BstF5I	GGATG	2 cut(s)	122, 156
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	16, 28, 93, 140
BstMBI	GATC	4 cut(s)	13, 25, 90, 137
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 242, 452
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	4 cut(s)	53, 219, 220, 344
BstV1I	GCAGC	2 cut(s)	385, 433
BstX2I	RGATCY	2 cut(s)	25, 137
BstYI	RGATCY	2 cut(s)	25, 137
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	188, 277
BtgI	CCRYGG	3 cut(s)	174, 402, 420
BtsCI	GGATG	2 cut(s)	122, 156
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	3 cut(s)	71, 234, 397
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	3 cut(s)	187, 217, 367
Cfr9I	CCCGGG	1 cut(s)	220
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	4 cut(s)	289, 310, 325, 349
CviAII	CATG	1 cut(s)	460
CviJI	RGCY	7 cut(s)	188, 196, 277, 338, 376, 399, 446
CviKI_1	RGCY	7 cut(s)	188, 196, 277, 338, 376, 399, 446
CviQI	GTAC	4 cut(s)	289, 310, 325, 349
DdeI	CTNAG	2 cut(s)	22, 40
DpnI	GATC	4 cut(s)	15, 27, 92, 139
DpnII	GATC	4 cut(s)	13, 25, 90, 137
EaeI	YGGCCR	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	217, 367
Eco53kI	GAGCTC	1 cut(s)	399
Eco72I	CACGTG	2 cut(s)	239, 392
Eco88I	CYCGRG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	401
FaeI	CATG	1 cut(s)	463
FaiI	YATR	2 cut(s)	280, 461
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	459
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	315, 374, 447
FokI	GGATG	2 cut(s)	129, 163
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	3 cut(s)	315, 374, 447
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	3 cut(s)	315, 374, 447
GsaI	CCCAGC	2 cut(s)	321, 446
HaeIII	GGCC	2 cut(s)	188, 277
HapII	CCGG	3 cut(s)	221, 345, 379
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HpaII	CCGG	3 cut(s)	221, 345, 379
HphI	GGTGA	2 cut(s)	109, 142
Hpy166II	GTNNAC	2 cut(s)	217, 325
Hpy188I	TCNGA	2 cut(s)	25, 252
Hpy188III	TCNNGA	3 cut(s)	11, 79, 379
Hpy8I	GTNNAC	2 cut(s)	217, 325
Hpy99I	CGWCG	2 cut(s)	296, 299
HpyAV	CCTTC	4 cut(s)	107, 121, 256, 328
HpyCH4III	ACNGT	3 cut(s)	85, 175, 202
HpyCH4IV	ACGT	7 cut(s)	213, 238, 282, 294, 351, 360, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 242, 452
HpyF3I	CTNAG	2 cut(s)	22, 40
HpySE526I	ACGT	7 cut(s)	213, 238, 282, 294, 351, 360, 391
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	1 cut(s)	181
Kpn2I	TCCGGA	1 cut(s)	378
Kzo9I	GATC	4 cut(s)	13, 25, 90, 137
LmnI	GCTCC	4 cut(s)	178, 343, 381, 404
Lsp1109I	GCAGC	2 cut(s)	385, 433
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	7 cut(s)	213, 238, 282, 294, 351, 360, 391
MaeIII	GTNAC	3 cut(s)	160, 169, 413
MalI	GATC	4 cut(s)	15, 27, 92, 139
MboI	GATC	4 cut(s)	13, 25, 90, 137
MboII	GAAGA	1 cut(s)	112
MflI	RGATCY	2 cut(s)	25, 137
MhlI	GDGCHC	2 cut(s)	10, 401
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	6 cut(s)	117, 126, 139, 348, 358, 395
Mox20I	TGGCCA	1 cut(s)	277
MroI	TCCGGA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	277
MslI	CAYNNNNRTG	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	277
MspA1I	CMGCKG	2 cut(s)	317, 446
MspI	CCGG	3 cut(s)	221, 345, 379
MspR9I	CCNGG	4 cut(s)	55, 221, 222, 346
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	117, 242, 452
NciI	CCSGG	3 cut(s)	221, 222, 346
NdeII	GATC	4 cut(s)	13, 25, 90, 137
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	4 cut(s)	219, 339, 369, 383
NmuCI	GTSAC	2 cut(s)	160, 169
OliI	CACNNNNGTG	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	3 cut(s)	210, 288, 357
PctI	GAATGC	1 cut(s)	425
Pfl23II	CGTACG	2 cut(s)	288, 309
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	316, 375, 448
PmaCI	CACGTG	2 cut(s)	239, 392
PmlI	CACGTG	2 cut(s)	239, 392
Ppu21I	YACGTR	4 cut(s)	214, 239, 352, 392
PpuMI	RGGWCCY	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	53
PspCI	CACGTG	2 cut(s)	239, 392
PspFI	CCCAGC	2 cut(s)	317, 442
PspGI	CCWGG	1 cut(s)	53
PspLI	CGTACG	2 cut(s)	288, 309
PspN4I	GGNNCC	4 cut(s)	219, 339, 369, 383
PspPI	GGNCC	3 cut(s)	187, 217, 367
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	2 cut(s)	25, 137
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	4 cut(s)	290, 311, 326, 350
RsaNI	GTAC	4 cut(s)	289, 310, 325, 349
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	401
SatI	GCNGC	3 cut(s)	315, 374, 447
Sau3AI	GATC	4 cut(s)	13, 25, 90, 137
Sau96I	GGNCC	3 cut(s)	187, 217, 367
ScrFI	CCNGG	4 cut(s)	55, 221, 222, 346
SduI	GDGCHC	2 cut(s)	10, 401
SfaNI	GCATC	1 cut(s)	107
SinI	GGWCC	2 cut(s)	217, 367
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	2 cut(s)	315, 371
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	4 cut(s)	53, 219, 220, 344
TaaI	ACNGT	3 cut(s)	85, 175, 202
TaiI	ACGT	7 cut(s)	216, 241, 285, 297, 354, 363, 394
TasI	AATT	1 cut(s)	74
TauI	GCSGC	1 cut(s)	317
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	2 cut(s)	160, 169
TseI	GCWGC	2 cut(s)	373, 446
Tsp45I	GTSAC	2 cut(s)	160, 169
TspDTI	ATGAA	2 cut(s)	167, 450
TspGWI	ACGGA	2 cut(s)	330, 419
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	1 cut(s)	436
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	217, 367
XbaI	TCTAGA	1 cut(s)	10
XmaI	CCCGGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	11
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.