FvH4_2g01160

Heavy metal-associated isoprenylated plant protein 26-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013867
Physical Location & Seq
Forward (+)
1106828 .. 1108186
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01160.t1

Sequence Viewer

Length: 459 bp
ATGGGTGCTCTAGATCATTTCTCTCATCTATTTGATTGCTCCAGTGGGAGTCATCACAAGAAGCGAAAGAATTTCCAGACGGTGGAGATTAAGGTGAAGATGGACTGCGAAGGTTGCGAGAGGAAGGTGAGGAGGTCAGTGGAGGGAATGAAGGGCGTGACACAAGTCGACATAGACCGGAAAGCGAGCAAGCTGACGGTGGTCGGATACGTGGAGCCGAAGAAGGTGTTGGCACGCGTCGCGCATCGGACGGGGAAGAAGGTGGAGATCTGGCCGTATGTGCCTTACGACGTCGTTGACCACCCATACGCACAGGGTGTATACGACAAGAAGGCTCCGGCGGGTTACGTGCGAAGTGACCAACAGATGTCCGGGGGGTTGGCACGTGCGAGCTCCACGGAAGTGAGGTACACCACCGCTTTCAGTGATGAAAACCCAGCTGCCTGCACCGTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

153

Amino Acids

16.98

Weight (kDa)

9.26

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 31 - 86 3.1e-13 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38580 AT4G38580
fragaria_vesca FvH4_2g01160
malus_domestica MD05G1121800.v1.1 MD10G1124400.v1.1
prunus_persica Prupe.8G165600_v2.0.a1
pyrus_communis pycom05g11580
rosa_chinensis RchiOBHm_Chr6g0251781
rosa_laevigata RLG00000015430
rosa_multiflora Rmu_ssc0000213.1_g000113
rosa_roxburghii Rroxscaffold_7G00216390
rosa_rugosa Rorug05G0503900
rosa_samantha Rh6AG014700 Rh6BG013100 Rh6CG010100 Rh6DG011300
rosa_wichuraiana Rw6G001460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 82
AccI GTMKAC 2 cut(s) 168, 321
AccII CGCG 2 cut(s) 237, 242
AciI CCGC 2 cut(s) 341, 417
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 1 cut(s) 70
AcvI CACGTG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 317
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 3 cut(s) 193, 393, 440
AluI AGCT 3 cut(s) 193, 393, 440
Alw21I GWGCWC 2 cut(s) 10, 395
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 70
AspLEI GCGC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 2 cut(s) 106, 139
BanII GRGCYC 1 cut(s) 395
BbrPI CACGTG 1 cut(s) 386
Bbv12I GWGCWC 2 cut(s) 10, 395
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 259
BciVI GTATCC 1 cut(s) 200
BcnI CCSGG 1 cut(s) 373
BfaI CTAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 200
BglII AGATCT 1 cut(s) 267
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 373
BmiI GGNNCC 2 cut(s) 216, 336
BmrFI CCNGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 253
BoxI GACNNNNGTC 2 cut(s) 164, 200
BpmI CTGGAG 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 373
BsaAI YACGTR 3 cut(s) 211, 349, 386
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 372, 396
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 372, 396
BseLI CCNNNNNNNGG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 427
BseYI CCCAGC 1 cut(s) 436
BsgI GTGCAG 1 cut(s) 430
Bsh1236I CGCG 2 cut(s) 237, 242
BshFI GGCC 1 cut(s) 274
BsiHKAI GWGCWC 2 cut(s) 10, 395
BsiSI CCGG 3 cut(s) 178, 338, 372
BslI CCNNNNNNNGG 1 cut(s) 82
BsnI GGCC 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 10, 395
Bsp143I GATC 2 cut(s) 13, 267
BspACI CCGC 2 cut(s) 341, 417
BspANI GGCC 1 cut(s) 274
BspFNI CGCG 2 cut(s) 237, 242
BspLI GGNNCC 2 cut(s) 216, 336
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 372, 396
BssMI GATC 2 cut(s) 13, 267
BssNAI GTATAC 1 cut(s) 322
BssNI GRCGYC 1 cut(s) 291
Bst1107I GTATAC 1 cut(s) 322
Bst4CI ACNGT 3 cut(s) 82, 199, 451
BstACI GRCGYC 1 cut(s) 291
BstBAI YACGTR 3 cut(s) 211, 349, 386
BstC8I GCNNGC 5 cut(s) 187, 191, 235, 391, 445
BstDSI CCRYGG 1 cut(s) 396
BstFNI CGCG 2 cut(s) 237, 242
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 2 cut(s) 16, 270
BstMBI GATC 2 cut(s) 13, 267
BstMWI GCNNNNNNNGC 3 cut(s) 114, 239, 280
BstPAI GACNNNNGTC 2 cut(s) 164, 200
BstSCI CCNGG 1 cut(s) 371
BstUI CGCG 2 cut(s) 237, 242
BstV1I GCAGC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BstZ17I GTATAC 1 cut(s) 322
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 274
BtgI CCRYGG 1 cut(s) 396
BtsIMutI CAGTG 3 cut(s) 49, 144, 430
Cac8I GCNNGC 5 cut(s) 187, 191, 235, 391, 445
CfoI GCGC 1 cut(s) 244
CseI GACGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 409
CviAII CATG 1 cut(s) 454
CviJI RGCY 6 cut(s) 193, 217, 274, 335, 393, 440
CviKI_1 RGCY 6 cut(s) 193, 217, 274, 335, 393, 440
CviQI GTAC 1 cut(s) 409
DpnI GATC 2 cut(s) 15, 269
DpnII GATC 2 cut(s) 13, 267
DraIII CACNNNGTG 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 393
Eco72I CACGTG 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 395
FaeI CATG 1 cut(s) 457
FaiI YATR 5 cut(s) 173, 279, 307, 322, 455
FatI CATG 1 cut(s) 453
FauI CCCGC 1 cut(s) 334
FblI GTMKAC 2 cut(s) 168, 321
Fnu4HI GCNGC 1 cut(s) 441
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 441
GsaI CCCAGC 1 cut(s) 440
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 1 cut(s) 274
HapII CCGG 3 cut(s) 178, 338, 372
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 1 cut(s) 457
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 2 cut(s) 169, 298
HindII GTYRAC 2 cut(s) 169, 298
HinfI GANTC 1 cut(s) 49
HpaII CCGG 3 cut(s) 178, 338, 372
HphI GGTGA 2 cut(s) 106, 139
Hpy166II GTNNAC 4 cut(s) 169, 298, 322, 411
Hpy188I TCNGA 2 cut(s) 206, 249
Hpy188III TCNNGA 2 cut(s) 11, 76
Hpy8I GTNNAC 4 cut(s) 169, 298, 322, 411
Hpy99I CGWCG 3 cut(s) 242, 293, 296
HpyAV CCTTC 6 cut(s) 104, 118, 145, 217, 253, 325
HpyCH4III ACNGT 3 cut(s) 82, 199, 451
HpyCH4IV ACGT 4 cut(s) 210, 291, 348, 385
HpyCH4V TGCA 1 cut(s) 447
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 239, 280
HpySE526I ACGT 4 cut(s) 210, 291, 348, 385
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 1 cut(s) 457
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 2 cut(s) 13, 267
LmnI GCTCC 4 cut(s) 44, 214, 340, 398
LpnPI CCDG 8 cut(s) 55, 89, 191, 256, 299, 351, 385, 450
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 11
MaeII ACGT 4 cut(s) 210, 291, 348, 385
MaeIII GTNAC 3 cut(s) 157, 344, 356
MalI GATC 2 cut(s) 15, 269
MboI GATC 2 cut(s) 13, 267
MboII GAAGA 3 cut(s) 109, 232, 268
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 10, 395
MluCI AATT 1 cut(s) 70
MluI ACGCGT 1 cut(s) 235
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 5 cut(s) 114, 123, 126, 136, 399
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 2 cut(s) 401, 452
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 3 cut(s) 178, 338, 372
MspR9I CCNGG 1 cut(s) 373
MvnI CGCG 2 cut(s) 237, 242
MwoI GCNNNNNNNGC 3 cut(s) 114, 239, 280
NciI CCSGG 1 cut(s) 373
NdeII GATC 2 cut(s) 13, 267
NlaIII CATG 1 cut(s) 457
NlaIV GGNNCC 2 cut(s) 216, 336
NmuCI GTSAC 2 cut(s) 157, 356
OliI CACNNNNGTG 1 cut(s) 401
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 1 cut(s) 57
PmaCI CACGTG 1 cut(s) 386
PmlI CACGTG 1 cut(s) 386
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 3 cut(s) 211, 349, 386
PshAI GACNNNNGTC 2 cut(s) 164, 200
Psp124BI GAGCTC 1 cut(s) 395
PspCI CACGTG 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 216, 336
PsuI RGATCY 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 2 cut(s) 401, 452
SacI GAGCTC 1 cut(s) 395
SalI GTCGAC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 2 cut(s) 13, 267
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 373
SduI GDGCHC 2 cut(s) 10, 395
SfaNI GCATC 1 cut(s) 253
SmiMI CAYNNNNRTG 2 cut(s) 401, 452
Sse9I AATT 1 cut(s) 70
SsiI CCGC 2 cut(s) 341, 417
SspMI CTAG 1 cut(s) 11
SstI GAGCTC 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 371
TaaI ACNGT 3 cut(s) 82, 199, 451
TaiI ACGT 4 cut(s) 213, 294, 351, 388
TaqI TCGA 1 cut(s) 168
TasI AATT 1 cut(s) 70
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 3 cut(s) 49, 144, 430
TseFI GTSAC 2 cut(s) 157, 356
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 157, 356
TspDTI ATGAA 2 cut(s) 164, 444
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 3 cut(s) 49, 144, 430
Van91I CCANNNNNTGG 1 cut(s) 82
XapI RAATTY 1 cut(s) 70
XbaI TCTAGA 1 cut(s) 10
XmiI GTMKAC 2 cut(s) 168, 321
XspI CTAG 1 cut(s) 11
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.