Rh6BG013100

Heavy metal-associated isoprenylated plant protein 26-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013867
Physical Location & Seq
Forward (+)
1908417 .. 1909855
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG013100.1

Sequence Viewer

Length: 462 bp
ATGGGTGCTCTAGATCATTTTTCTAATCTATTTGATTGCTCAAGTGGGGGTCATCACAAGAAGCGAAAGAATTTCCAGACGGTGGAGATTAAGGTGAAGATGGACTGCGAAGGGTGCGAGAGGAAGGTGAGGAGATCGGTGGAGGGAATGAAGGGGGTGTCACAGGTGGACATAGACCGCAAGGCCAGCAAGCTGACGGTGACCGGATACGTGGAGCCCAAGAAGGTGGTGGCACGCGTCGCGCATCGGACGGGCAAGAGGGTGGAGATCTGGCCGTACGTGCCGTACGACGTCGTCGACCACCCTTACGCACAGGGGGTATACGACAAGAAGGCTCCGTCGGGGTACGTGCGAGGCGACCAGCAGATGTCCGGGGGGGGACTCGCACGTGCGAGCTCCACCGAAGTTAGGTACACTACGGCTTTCAGTGATGAAAACCCAGCTGCCTGCACTGTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

153

Amino Acids

16.97

Weight (kDa)

9.28

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 31 - 85 5.6e-14 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38580 AT4G38580
fragaria_vesca FvH4_2g01160
malus_domestica MD05G1121800.v1.1 MD10G1124400.v1.1
prunus_persica Prupe.8G165600_v2.0.a1
pyrus_communis pycom05g11580
rosa_chinensis RchiOBHm_Chr6g0251781
rosa_laevigata RLG00000015430
rosa_multiflora Rmu_ssc0000213.1_g000113
rosa_roxburghii Rroxscaffold_7G00216390
rosa_rugosa Rorug05G0503900
rosa_samantha Rh6AG014700 Rh6BG013100 Rh6CG010100 Rh6DG011300
rosa_wichuraiana Rw6G001460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 82
AccI GTMKAC 2 cut(s) 297, 321
AccII CGCG 2 cut(s) 237, 242
AciI CCGC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 1 cut(s) 70
AcvI CACGTG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 4 cut(s) 278, 287, 347, 413
AfiI CCNNNNNNNGG 2 cut(s) 82, 408
AflIII ACRYGT 1 cut(s) 235
AluBI AGCT 3 cut(s) 193, 396, 443
AluI AGCT 3 cut(s) 193, 396, 443
Alw21I GWGCWC 2 cut(s) 10, 398
AoxI GGCC 2 cut(s) 183, 272
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 70
AspLEI GCGC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 3 cut(s) 106, 139, 211
BanII GRGCYC 2 cut(s) 219, 398
BbrPI CACGTG 1 cut(s) 389
Bbv12I GWGCWC 2 cut(s) 10, 398
BbvI GCAGC 1 cut(s) 430
BccI CCATC 1 cut(s) 94
BceAI ACGGC 3 cut(s) 259, 268, 435
BciVI GTATCC 1 cut(s) 200
BcnI CCSGG 1 cut(s) 373
BfaI CTAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 200
BglII AGATCT 1 cut(s) 267
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 373
BmiI GGNNCC 2 cut(s) 216, 336
BmrFI CCNGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 373
BsaAI YACGTR 4 cut(s) 211, 280, 349, 389
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 372
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 408
BseDI CCNNGG 1 cut(s) 372
BseLI CCNNNNNNNGG 2 cut(s) 82, 408
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 430
BseYI CCCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 433
Bsh1236I CGCG 2 cut(s) 237, 242
BshFI GGCC 2 cut(s) 185, 274
BsiHKAI GWGCWC 2 cut(s) 10, 398
BsiSI CCGG 2 cut(s) 204, 372
BsiWI CGTACG 2 cut(s) 276, 285
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 82, 408
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 2 cut(s) 185, 274
Bsp1286I GDGCHC 3 cut(s) 10, 219, 398
Bsp143I GATC 3 cut(s) 13, 134, 267
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 185, 274
BspFNI CGCG 2 cut(s) 237, 242
BspLI GGNNCC 2 cut(s) 216, 336
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 3 cut(s) 13, 134, 267
BssNAI GTATAC 1 cut(s) 322
BssNI GRCGYC 1 cut(s) 291
Bst1107I GTATAC 1 cut(s) 322
Bst4CI ACNGT 3 cut(s) 82, 199, 454
BstACI GRCGYC 1 cut(s) 291
BstBAI YACGTR 4 cut(s) 211, 280, 349, 389
BstC8I GCNNGC 5 cut(s) 187, 191, 235, 394, 448
BstEII GGTNACC 1 cut(s) 199
BstFNI CGCG 2 cut(s) 237, 242
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 3 cut(s) 16, 137, 270
BstMBI GATC 3 cut(s) 13, 134, 267
BstMWI GCNNNNNNNGC 4 cut(s) 114, 186, 239, 280
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 371
BstUI CGCG 2 cut(s) 237, 242
BstV1I GCAGC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 267
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 267
BstZ17I GTATAC 1 cut(s) 322
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 2 cut(s) 185, 274
BtsIMutI CAGTG 2 cut(s) 433, 450
Cac8I GCNNGC 5 cut(s) 187, 191, 235, 394, 448
CfoI GCGC 1 cut(s) 244
CseI GACGC 1 cut(s) 226
Csp6I GTAC 4 cut(s) 277, 286, 346, 412
CviAII CATG 1 cut(s) 457
CviJI RGCY 8 cut(s) 185, 193, 217, 274, 335, 396, 422, 443
CviKI_1 RGCY 8 cut(s) 185, 193, 217, 274, 335, 396, 422, 443
CviQI GTAC 4 cut(s) 277, 286, 346, 412
DpnI GATC 3 cut(s) 15, 136, 269
DpnII GATC 3 cut(s) 13, 134, 267
EaeI YGGCCR 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 396
Eco24I GRGCYC 2 cut(s) 219, 398
Eco53kI GAGCTC 1 cut(s) 396
Eco72I CACGTG 1 cut(s) 389
Eco91I GGTNACC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 396
EcoO65I GGTNACC 1 cut(s) 199
EcoT38I GRGCYC 2 cut(s) 219, 398
FaeI CATG 1 cut(s) 460
FaiI YATR 3 cut(s) 173, 322, 458
FaqI GGGAC 1 cut(s) 393
FatI CATG 1 cut(s) 456
FblI GTMKAC 2 cut(s) 297, 321
Fnu4HI GCNGC 1 cut(s) 444
FriOI GRGCYC 2 cut(s) 219, 398
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 444
GsaI CCCAGC 1 cut(s) 443
HaeIII GGCC 2 cut(s) 185, 274
HapII CCGG 2 cut(s) 204, 372
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 1 cut(s) 460
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 1 cut(s) 381
HpaII CCGG 2 cut(s) 204, 372
HphI GGTGA 3 cut(s) 106, 139, 211
Hpy166II GTNNAC 4 cut(s) 169, 298, 322, 414
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 2 cut(s) 11, 76
Hpy8I GTNNAC 4 cut(s) 169, 298, 322, 414
Hpy99I CGWCG 5 cut(s) 242, 293, 296, 299, 343
HpyAV CCTTC 5 cut(s) 104, 118, 145, 217, 325
HpyCH4III ACNGT 3 cut(s) 82, 199, 454
HpyCH4IV ACGT 5 cut(s) 210, 279, 291, 348, 388
HpyCH4V TGCA 1 cut(s) 450
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 186, 239, 280
HpySE526I ACGT 5 cut(s) 210, 279, 291, 348, 388
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 1 cut(s) 460
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 3 cut(s) 13, 134, 267
LmnI GCTCC 3 cut(s) 214, 340, 401
LpnPI CCDG 9 cut(s) 89, 149, 199, 217, 256, 299, 374, 385, 453
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 11
MaeII ACGT 5 cut(s) 210, 279, 291, 348, 388
MaeIII GTNAC 2 cut(s) 159, 199
MalI GATC 3 cut(s) 15, 136, 269
MboI GATC 3 cut(s) 13, 134, 267
MboII GAAGA 1 cut(s) 109
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 3 cut(s) 10, 219, 398
MluCI AATT 1 cut(s) 70
MluI ACGCGT 1 cut(s) 235
MlyI GAGTC 1 cut(s) 375
MnlI CCTC 5 cut(s) 114, 123, 136, 252, 347
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 204, 372
MspR9I CCNGG 1 cut(s) 373
MvnI CGCG 2 cut(s) 237, 242
MwoI GCNNNNNNNGC 4 cut(s) 114, 186, 239, 280
NciI CCSGG 1 cut(s) 373
NdeII GATC 3 cut(s) 13, 134, 267
NlaIII CATG 1 cut(s) 460
NlaIV GGNNCC 2 cut(s) 216, 336
NmuCI GTSAC 2 cut(s) 159, 199
PcsI WCGNNNNNNNCGW 3 cut(s) 285, 294, 354
Pfl23II CGTACG 2 cut(s) 276, 285
PflFI GACNNNGTC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 375
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
PpsI GAGTC 1 cut(s) 375
Ppu21I YACGTR 4 cut(s) 211, 280, 349, 389
Psp124BI GAGCTC 1 cut(s) 398
PspCI CACGTG 1 cut(s) 389
PspEI GGTNACC 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 439
PspLI CGTACG 2 cut(s) 276, 285
PspN4I GGNNCC 2 cut(s) 216, 336
PsuI RGATCY 1 cut(s) 267
PsyI GACNNNGTC 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 4 cut(s) 278, 287, 347, 413
RsaNI GTAC 4 cut(s) 277, 286, 346, 412
RseI CAYNNNNRTG 1 cut(s) 455
SacI GAGCTC 1 cut(s) 398
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 3 cut(s) 13, 134, 267
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 1 cut(s) 373
SduI GDGCHC 3 cut(s) 10, 219, 398
SfaNI GCATC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 1 cut(s) 70
SsiI CCGC 1 cut(s) 178
SspMI CTAG 1 cut(s) 11
SstI GAGCTC 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 371
TaaI ACNGT 3 cut(s) 82, 199, 454
TaiI ACGT 5 cut(s) 213, 282, 294, 351, 391
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 70
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 2 cut(s) 433, 457
TseFI GTSAC 2 cut(s) 159, 199
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 2 cut(s) 159, 199
TspDTI ATGAA 2 cut(s) 164, 447
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 2 cut(s) 433, 457
Tth111I GACNNNGTC 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 82
XapI RAATTY 1 cut(s) 70
XbaI TCTAGA 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmiI GTMKAC 2 cut(s) 297, 321
XspI CTAG 1 cut(s) 11
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.