Rorug05G0503900

Heavy metal-associated isoprenylated plant protein 26-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
68650123 .. 68653421
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0503900.1

Sequence Viewer

Length: 1548 bp
ATGGGTTCGGATTCATATTCGGGTCAAACAATCATGCAGCGCCTTTGCCGCGTAAAAACTTTTCACTTTCCCCCGCTTTCTTTCTGGGCTCTAAACGTTTCCTTTTCTCCCTCTCCAGAGCGATCATCTTGCTCATCATTCGGTTTCTGGGGAAAAGATAGGACTATGGATGCAAGTTCTCGAATGGTACAATATAAAGAGCAGAAGTTGGATGGAGGAGAAGTGATGATAGGAGTCAGCAAGAGTTTAAGCAATTTACCTGATGTGCTTATTGTAAAAATTCTCTCCCTGCTTCCAACCAAAGATGCTATCAGGACAAGCATTCTATCTAAAAGATGGGAATACATATGGACATCACTTCCCAATCTCAAGTTTATTCAATGGAAGTTTGAGAATAAGAGAACTTCCTTGGTGAATGCTGTGGAAAGAGCGCTTATTCTTCGTGGCCCTGCTGATATTAAAGAGTTCACTCTTTCATTTGAAGTGTTGGGAGATGCATTACGTGTTAATACGTGGATCTCTGCTGTATTACAGCGCAATGTTGAAGATCTTTCTTTAGCTCTGCACAGTTTCAATGACCCAGTTTCTTTGCCTCGTTCTTTATTTACGTCTGCGACATTGAAAGTGCTCCTGCTGGAACTGCCCTGTATTTTCAAAGTTCCTTCTACTATTTGTTTCTCAAGCCTAAGGAGCTTAACTCTTTCGTCCGTGGTGTTTTCTGACGACTACTCGGCCCAGCAGTTGTTTTCTGGTTGCTCAGTTCTTGAGGAAATATTTCTATATGGTTGCAATTGGGCAAATCTCAACTTTTTGAGTATTTCTGCTCCGAAGCTTTTGAGGTTTACCATAGATGAAGGGGATTCACAAATTTTAAGAGGTTCAGATGGTTGTCAGATTATGGTACTTGGAGTTAGACTGGCATATTTTTCTTACACAGGTGAGTTCCTAGATGACTATTGCTTTTATAACTCATCAGCAAATGAAGCTCTGATATCTCTTAATTCTATCAAGAGGGTCCAACAAGTTAGTTACCGGTTGTATAAGCTTCTTAATGGGCTCTCTAGTGTGAAGCACCTAACCATCTGTGATACGTCCTTTGAGGTGGTTCAGACTAATGCTTCAGAACATCTTATGCCCTCGTTCAATAATCTAACCACCTTGATATTTGAACGAGTGGAAGTAGATCTCGGTTGCAAAGGACTATTGACCTTTCTTCAAAATTGTCCTTGTCTTAAGTATCTTATATTCTGTGAGGGGATTGGTCTGTACTCAGATGATGCAAAAGATGATGGGATGTTGGAGCCACTGCCTCCATGTTTCTTGAATAGTCTTGAAGAGATTGATGTCTTAGAATTTTGTGGAGATGAGGATGAGCTTCATGCAATGAAGGTCTTGCTAAATTGTGCAATGGTCTTGAAAAAGGTGACTATTAATTGGTGCAGTGGTGTTCAAGTGGAACCAGAAACGATGAAGGACATTAACAAACAGTTATTAGATCTCCCCAGAGGGTCAGAAAACTGCAAAGTTGTTTGTTTGTGCCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

57.91

Weight (kDa)

5.41

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 83 - 123 1.7e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 152 - 482 8.9e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 170 - 280 4e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38580 AT4G38580
fragaria_vesca FvH4_2g01160
malus_domestica MD05G1121800.v1.1 MD10G1124400.v1.1
prunus_persica Prupe.8G165600_v2.0.a1
pyrus_communis pycom05g11580
rosa_chinensis RchiOBHm_Chr6g0251781
rosa_laevigata RLG00000015430
rosa_multiflora Rmu_ssc0000213.1_g000113
rosa_roxburghii Rroxscaffold_7G00216390
rosa_rugosa Rorug05G0503900
rosa_samantha Rh6AG014700 Rh6BG013100 Rh6CG010100 Rh6DG011300
rosa_wichuraiana Rw6G001460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
AccII CGCG 1 cut(s) 51
AciI CCGC 2 cut(s) 49, 74
AclI AACGTT 1 cut(s) 96
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 3 cut(s) 279, 867, 1352
AcuI CTGAAG 1 cut(s) 1104
AfaI GTAC 3 cut(s) 189, 903, 1268
AfeI AGCGCT 1 cut(s) 432
AflII CTTAAG 1 cut(s) 1232
AflIII ACRYGT 1 cut(s) 502
AgeI ACCGGT 1 cut(s) 1032
AluBI AGCT 6 cut(s) 560, 693, 832, 986, 1045, 1375
AluI AGCT 6 cut(s) 560, 693, 832, 986, 1045, 1375
Alw21I GWGCWC 1 cut(s) 630
AlwI GGATC 1 cut(s) 524
Aor51HI AGCGCT 1 cut(s) 432
AoxI GGCC 2 cut(s) 445, 732
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 3 cut(s) 279, 867, 1352
AseI ATTAAT 1 cut(s) 1431
AsiGI ACCGGT 1 cut(s) 1032
Asp700I GAANNNNTTC 1 cut(s) 774
AspLEI GCGC 3 cut(s) 42, 433, 537
AspS9I GGNCC 3 cut(s) 446, 733, 1015
AsuHPI GGTGA 3 cut(s) 424, 950, 1435
AvaII GGWCC 1 cut(s) 1015
AxyI CCTNAGG 1 cut(s) 686
BaeGI GKGCMC 1 cut(s) 1541
BanII GRGCYC 2 cut(s) 91, 1059
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 49
BccI CCATC 5 cut(s) 206, 330, 878, 1088, 1283
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BfaI CTAG 2 cut(s) 947, 1062
BfoI RGCGCY 2 cut(s) 43, 434
BfrI CTTAAG 1 cut(s) 1232
BglII AGATCT 3 cut(s) 547, 1183, 1495
BisI GCNGC 2 cut(s) 38, 49
BlsI GCNGC 2 cut(s) 39, 50
Bme18I GGWCC 1 cut(s) 1015
BmgT120I GGNCC 3 cut(s) 446, 733, 1015
BmiI GGNNCC 3 cut(s) 1016, 1302, 1458
BmrI ACTGGG 1 cut(s) 575
BmsI GCATC 4 cut(s) 160, 295, 484, 1267
BmuI ACTGGG 1 cut(s) 575
BplI GAGNNNNNCTC 2 cut(s) 682, 714
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 3 cut(s) 353, 664, 785
BsaAI YACGTR 2 cut(s) 503, 513
BsaJI CCNNGG 2 cut(s) 408, 708
BsaWI WCCGGW 1 cut(s) 1032
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse118I RCCGGY 1 cut(s) 1032
Bse1I ACTGG 2 cut(s) 581, 921
Bse21I CCTNAGG 1 cut(s) 686
Bse3DI GCAATG 3 cut(s) 544, 1389, 1413
BseDI CCNNGG 2 cut(s) 408, 708
BseGI GGATG 4 cut(s) 175, 217, 1299, 1375
BseMI GCAATG 3 cut(s) 544, 1389, 1413
BseMII CTCAG 2 cut(s) 771, 1284
BseNI ACTGG 2 cut(s) 581, 921
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 1541
BseXI GCAGC 1 cut(s) 49
BseYI CCCAGC 1 cut(s) 735
BsgI GTGCAG 2 cut(s) 548, 1459
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 447, 734
BshTI ACCGGT 1 cut(s) 1032
BsiHKAI GWGCWC 1 cut(s) 630
BsiSI CCGG 1 cut(s) 1033
BsmI GAATGC 2 cut(s) 321, 421
BsnI GGCC 2 cut(s) 447, 734
Bsp1286I GDGCHC 4 cut(s) 91, 630, 1059, 1541
Bsp143I GATC 5 cut(s) 122, 516, 547, 1183, 1495
BspACI CCGC 2 cut(s) 49, 74
BspANI GGCC 2 cut(s) 447, 734
BspCNI CTCAG 2 cut(s) 770, 1283
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 1016, 1302, 1458
BspPI GGATC 1 cut(s) 524
BspTI CTTAAG 1 cut(s) 1232
BsrDI GCAATG 3 cut(s) 544, 1389, 1413
BsrFI RCCGGY 1 cut(s) 1032
BsrI ACTGG 2 cut(s) 581, 921
BssAI RCCGGY 1 cut(s) 1032
BssECI CCNNGG 2 cut(s) 408, 708
BssMI GATC 5 cut(s) 122, 516, 547, 1183, 1495
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 569, 1488
Bst6I CTCTTC 1 cut(s) 1329
BstAFI CTTAAG 1 cut(s) 1232
BstBAI YACGTR 2 cut(s) 503, 513
BstDEI CTNAG 4 cut(s) 686, 757, 1270, 1348
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 4 cut(s) 175, 217, 1299, 1375
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 2 cut(s) 43, 434
BstHHI GCGC 3 cut(s) 42, 433, 537
BstKTI GATC 5 cut(s) 125, 519, 550, 1186, 1498
BstMBI GATC 5 cut(s) 122, 516, 547, 1183, 1495
BstMWI GCNNNNNNNGC 4 cut(s) 48, 640, 690, 983
BstSLI GKGCMC 1 cut(s) 1541
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 4 cut(s) 516, 547, 1183, 1495
BstYI RGATCY 4 cut(s) 516, 547, 1183, 1495
Bsu36I CCTNAGG 1 cut(s) 686
BsuRI GGCC 2 cut(s) 447, 734
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 4 cut(s) 175, 217, 1299, 1375
BtsI GCAGTG 2 cut(s) 1304, 1447
BtsIMutI CAGTG 2 cut(s) 1304, 1447
CfoI GCGC 3 cut(s) 42, 433, 537
Cfr10I RCCGGY 1 cut(s) 1032
Cfr13I GGNCC 3 cut(s) 446, 733, 1015
Csp6I GTAC 3 cut(s) 188, 902, 1267
CspAI ACCGGT 1 cut(s) 1032
CviAII CATG 3 cut(s) 34, 1314, 1379
CviQI GTAC 3 cut(s) 188, 902, 1267
DdeI CTNAG 4 cut(s) 686, 757, 1270, 1348
DpnI GATC 5 cut(s) 124, 518, 549, 1185, 1497
DpnII GATC 5 cut(s) 122, 516, 547, 1183, 1495
Eam1104I CTCTTC 1 cut(s) 1329
EarI CTCTTC 1 cut(s) 1329
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 2 cut(s) 91, 1059
Eco32I GATATC 1 cut(s) 993
Eco47I GGWCC 1 cut(s) 1015
Eco47III AGCGCT 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 1104
Eco81I CCTNAGG 1 cut(s) 686
EcoRV GATATC 1 cut(s) 993
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 91, 1059
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 3 cut(s) 37, 1317, 1382
FatI CATG 3 cut(s) 33, 1313, 1378
FauI CCCGC 1 cut(s) 81
FauNDI CATATG 1 cut(s) 347
Fnu4HI GCNGC 2 cut(s) 38, 49
FokI GGATG 4 cut(s) 182, 224, 1306, 1382
FriOI GRGCYC 2 cut(s) 91, 1059
Fsp4HI GCNGC 2 cut(s) 38, 49
FspBI CTAG 2 cut(s) 947, 1062
GlaI GCGC 3 cut(s) 41, 432, 536
GluI GCNGC 2 cut(s) 38, 49
GsaI CCCAGC 1 cut(s) 739
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 2 cut(s) 43, 434
HaeIII GGCC 2 cut(s) 447, 734
HapII CCGG 1 cut(s) 1033
HhaI GCGC 3 cut(s) 42, 433, 537
Hin1II CATG 3 cut(s) 37, 1317, 1382
Hin6I GCGC 3 cut(s) 40, 431, 535
HinP1I GCGC 3 cut(s) 40, 431, 535
HindIII AAGCTT 2 cut(s) 830, 1043
HinfI GANTC 3 cut(s) 11, 234, 860
HpaII CCGG 1 cut(s) 1033
HphI GGTGA 3 cut(s) 424, 950, 1435
Hpy166II GTNNAC 2 cut(s) 468, 843
Hpy188III TCNNGA 8 cut(s) 116, 180, 313, 764, 1009, 1321, 1331, 1414
Hpy8I GTNNAC 2 cut(s) 468, 843
HpyAV CCTTC 4 cut(s) 672, 848, 1381, 1465
HpyCH4III ACNGT 2 cut(s) 569, 1488
HpyCH4IV ACGT 5 cut(s) 96, 502, 512, 608, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 640, 690, 983
HpyF3I CTNAG 4 cut(s) 686, 757, 1270, 1348
HpySE526I ACGT 5 cut(s) 96, 502, 512, 608, 1091
Hsp92II CATG 3 cut(s) 37, 1317, 1382
HspAI GCGC 3 cut(s) 40, 431, 535
Kzo9I GATC 5 cut(s) 122, 516, 547, 1183, 1495
LmnI GCTCC 4 cut(s) 633, 690, 829, 1300
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 4 cut(s) 160, 295, 484, 1267
MaeI CTAG 2 cut(s) 947, 1062
MaeII ACGT 5 cut(s) 96, 502, 512, 608, 1091
MaeIII GTNAC 2 cut(s) 1028, 1423
MalI GATC 5 cut(s) 124, 518, 549, 1185, 1497
MboI GATC 5 cut(s) 122, 516, 547, 1183, 1495
MboII GAAGA 4 cut(s) 431, 557, 1205, 1346
MfeI CAATTG 1 cut(s) 790
MflI RGATCY 4 cut(s) 516, 547, 1183, 1495
MhlI GDGCHC 4 cut(s) 91, 630, 1059, 1541
MluCI AATT 9 cut(s) 253, 279, 790, 867, 1000, 1219, 1352, 1399, 1432
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 4 cut(s) 189, 320, 1042, 1278
Mph1103I ATGCAT 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 774
MspCI CTTAAG 1 cut(s) 1232
MspI CCGG 1 cut(s) 1033
MunI CAATTG 1 cut(s) 790
Mva1269I GAATGC 2 cut(s) 321, 421
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 48, 640, 690, 983
NdeI CATATG 1 cut(s) 347
NdeII GATC 5 cut(s) 122, 516, 547, 1183, 1495
NlaIII CATG 3 cut(s) 37, 1317, 1382
NlaIV GGNNCC 3 cut(s) 1016, 1302, 1458
NmeAIII GCCGAG 1 cut(s) 710
NmuCI GTSAC 1 cut(s) 1423
NsiI ATGCAT 1 cut(s) 499
PctI GAATGC 2 cut(s) 321, 421
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 2 cut(s) 11, 860
PinAI ACCGGT 1 cut(s) 1032
PkrI GCNGC 2 cut(s) 39, 50
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Ppu21I YACGTR 2 cut(s) 503, 513
PshBI ATTAAT 1 cut(s) 1431
PsiI TTATAA 1 cut(s) 966
Psp1406I AACGTT 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 735
PspN4I GGNNCC 3 cut(s) 1016, 1302, 1458
PspPI GGNCC 3 cut(s) 446, 733, 1015
PsuI RGATCY 4 cut(s) 516, 547, 1183, 1495
RsaI GTAC 3 cut(s) 189, 903, 1268
RsaNI GTAC 3 cut(s) 188, 902, 1267
SatI GCNGC 2 cut(s) 38, 49
Sau3AI GATC 5 cut(s) 122, 516, 547, 1183, 1495
Sau96I GGNCC 3 cut(s) 446, 733, 1015
SchI GAGTC 1 cut(s) 243
SduI GDGCHC 4 cut(s) 91, 630, 1059, 1541
SfaNI GCATC 4 cut(s) 160, 295, 484, 1267
SinI GGWCC 1 cut(s) 1015
SmlI CTYRAG 4 cut(s) 368, 679, 764, 1232
SmoI CTYRAG 4 cut(s) 368, 679, 764, 1232
Sse9I AATT 9 cut(s) 253, 279, 790, 867, 1000, 1219, 1352, 1399, 1432
SsiI CCGC 2 cut(s) 49, 74
SspI AATATT 1 cut(s) 774
SspMI CTAG 2 cut(s) 947, 1062
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 569, 1488
TaiI ACGT 5 cut(s) 99, 505, 515, 611, 1094
TaqI TCGA 1 cut(s) 181
TasI AATT 9 cut(s) 253, 279, 790, 867, 1000, 1219, 1352, 1399, 1432
TatI WGTACW 1 cut(s) 1266
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 11, 860
TscAI CASTG 2 cut(s) 1311, 1447
TseFI GTSAC 1 cut(s) 1423
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 1423
TspDTI ATGAA 6 cut(s) 465, 867, 996, 1367, 1400, 1484
TspGWI ACGGA 1 cut(s) 697
TspRI CASTG 2 cut(s) 1311, 1447
Vha464I CTTAAG 1 cut(s) 1232
VpaK11BI GGWCC 1 cut(s) 1015
VspI ATTAAT 1 cut(s) 1431
XapI RAATTY 3 cut(s) 279, 867, 1352
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 2 cut(s) 947, 1062
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.