Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013867

Physical Location & Seq

Genomic Coordinates Reverse (-)

15180231 .. 15181139

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGTGTTTTGGATCATTTTTCTGATCTATTTGATTGCTCAAGTGGGAGTTCCAGGCTCAAGAAACGCAGACAATTCCAGACGGTGGAGATCAAGGTGAAGATGGACTGCGAAGGATGCGAGCGGAAGGTGAAGAGATCGGTGGAAGGAATGAAGGGCGTAACGCAGGTGGACGTGGACCGCAAGGCCCACAAGCTGACGGTCGTCGGATACGTGGATCCCGGCAAGGTGCTGGCGCGCGTCGCGCATCGGACGGGGAAGAAGGTGGAGTTCTGGCCATACGTCCCCTACGACGTCGTGGCGCACCCTTACGCCGCTGGAGTGTACGACAAGAAGGCGCCGTCCGGGTACGTGCGGAACGCGCAGGACCCGCAGATGAGGAACCTCGCACGTGCCAGCTCCACGGAAGTGCGCTACACCACGGCATTCAGCGATGAAAATCCCGATGCGTGCGTTGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0009987 GO:0010286 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0032791 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046870 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

HMA

Protein Analysis

155

Amino Acids

17.29

Weight (kDa)

9.28

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38580 AT4G38580
fragaria_vesca	FvH4_2g01160
malus_domestica	MD05G1121800.v1.1 MD10G1124400.v1.1
prunus_persica	Prupe.8G165600_v2.0.a1
pyrus_communis	pycom05g11580
rosa_chinensis	RchiOBHm_Chr6g0251781
rosa_laevigata	RLG00000015430
rosa_multiflora	Rmu_ssc0000213.1_g000113
rosa_roxburghii	Rroxscaffold_7G00216390
rosa_rugosa	Rorug05G0503900
rosa_samantha	Rh6AG014700 Rh6BG013100 Rh6CG010100 Rh6DG011300
rosa_wichuraiana	Rw6G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
AatII	GACGTC	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	4 cut(s)	238, 240, 245, 362
AciI	CCGC	5 cut(s)	124, 181, 315, 355, 371
AclWI	GGATC	3 cut(s)	21, 212, 225
AcoI	YGGCCR	1 cut(s)	275
AcvI	CACGTG	1 cut(s)	392
AcyI	GRCGYC	2 cut(s)	294, 338
AfaI	GTAC	2 cut(s)	326, 350
AfiI	CCNNNNNNNGG	1 cut(s)	85
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	53
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	2 cut(s)	196, 399
AluI	AGCT	2 cut(s)	196, 399
AlwI	GGATC	3 cut(s)	21, 212, 225
AoxI	GGCC	2 cut(s)	186, 275
AspLEI	GCGC	7 cut(s)	238, 240, 247, 304, 340, 364, 414
AspS9I	GGNCC	3 cut(s)	178, 187, 367
AsuC2I	CCSGG	2 cut(s)	222, 346
AsuHPI	GGTGA	2 cut(s)	109, 142
AvaII	GGWCC	2 cut(s)	178, 367
BalI	TGGCCA	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	337
BbrPI	CACGTG	1 cut(s)	392
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	2 cut(s)	325, 438
BciT130I	CCWGG	1 cut(s)	55
BciVI	GTATCC	1 cut(s)	203
BcnI	CCSGG	2 cut(s)	222, 346
BfoI	RGCGCY	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	3 cut(s)	55, 222, 346
Bme18I	GGWCC	2 cut(s)	178, 367
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	3 cut(s)	178, 187, 367
BmiI	GGNNCC	4 cut(s)	219, 339, 369, 383
BmrFI	CCNGG	3 cut(s)	55, 222, 346
BmsI	GCATC	3 cut(s)	107, 256, 436
BoxI	GACNNNNGTC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	25, 44
BpuMI	CCSGG	2 cut(s)	222, 346
BsaAI	YACGTR	3 cut(s)	214, 352, 392
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	2 cut(s)	294, 338
BsaJI	CCNNGG	2 cut(s)	402, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	402, 420
BseGI	GGATG	1 cut(s)	122
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	85
BsePI	GCGCGC	1 cut(s)	236
Bsh1236I	CGCG	4 cut(s)	238, 240, 245, 362
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	188, 277
BshNI	GGYRCC	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	222, 345
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	188, 277
Bsp143I	GATC	5 cut(s)	13, 25, 90, 137, 217
BspACI	CCGC	5 cut(s)	124, 181, 315, 355, 371
BspANI	GGCC	2 cut(s)	188, 277
BspFNI	CGCG	4 cut(s)	238, 240, 245, 362
BspLI	GGNNCC	4 cut(s)	219, 339, 369, 383
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	3 cut(s)	21, 212, 225
BspT107I	GGYRCC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	402, 420
BssHII	GCGCGC	1 cut(s)	236
BssMI	GATC	5 cut(s)	13, 25, 90, 137, 217
BssNI	GRCGYC	2 cut(s)	294, 338
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	85, 202
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	2 cut(s)	294, 338
BstBAI	YACGTR	3 cut(s)	214, 352, 392
BstC8I	GCNNGC	5 cut(s)	122, 234, 238, 397, 451
BstDSI	CCRYGG	2 cut(s)	402, 420
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	4 cut(s)	238, 240, 245, 362
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	7 cut(s)	238, 240, 247, 304, 340, 364, 414
BstKTI	GATC	5 cut(s)	16, 28, 93, 140, 220
BstMBI	GATC	5 cut(s)	13, 25, 90, 137, 217
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 242, 244, 361, 370
BstNI	CCWGG	1 cut(s)	55
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	53, 220, 344
BstUI	CGCG	4 cut(s)	238, 240, 245, 362
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	188, 277
BtgI	CCRYGG	2 cut(s)	402, 420
BtgZI	GCGATG	1 cut(s)	447
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	122
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	5 cut(s)	122, 234, 238, 397, 451
CfoI	GCGC	7 cut(s)	238, 240, 247, 304, 340, 364, 414
Cfr13I	GGNCC	3 cut(s)	178, 187, 367
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	325, 349
CviJI	RGCY	5 cut(s)	58, 188, 196, 277, 399
CviKI_1	RGCY	5 cut(s)	58, 188, 196, 277, 399
CviQI	GTAC	2 cut(s)	325, 349
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	5 cut(s)	15, 27, 92, 139, 219
DpnII	GATC	5 cut(s)	13, 25, 90, 137, 217
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	178, 367
Eco72I	CACGTG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	53
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
FaiI	YATR	1 cut(s)	280
FaqI	GGGAC	1 cut(s)	269
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	315
GlaI	GCGC	7 cut(s)	237, 239, 246, 303, 339, 363, 413
GluI	GCNGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	188, 277
HapII	CCGG	2 cut(s)	222, 345
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	7 cut(s)	238, 240, 247, 304, 340, 364, 414
Hin1I	GRCGYC	2 cut(s)	294, 338
Hin6I	GCGC	7 cut(s)	236, 238, 245, 302, 338, 362, 412
HinP1I	GCGC	7 cut(s)	236, 238, 245, 302, 338, 362, 412
HpaII	CCGG	2 cut(s)	222, 345
HphI	GGTGA	2 cut(s)	109, 142
Hpy166II	GTNNAC	3 cut(s)	172, 178, 325
Hpy188I	TCNGA	3 cut(s)	25, 209, 252
Hpy188III	TCNNGA	3 cut(s)	61, 79, 443
Hpy8I	GTNNAC	3 cut(s)	172, 178, 325
Hpy99I	CGWCG	4 cut(s)	209, 245, 296, 299
HpyAV	CCTTC	6 cut(s)	107, 121, 140, 148, 256, 328
HpyCH4III	ACNGT	2 cut(s)	85, 202
HpyCH4IV	ACGT	6 cut(s)	174, 213, 282, 294, 351, 391
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 242, 244, 361, 370
HpySE526I	ACGT	6 cut(s)	174, 213, 282, 294, 351, 391
Hsp92I	GRCGYC	2 cut(s)	294, 338
HspAI	GCGC	7 cut(s)	236, 238, 245, 302, 338, 362, 412
KasI	GGCGCC	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	13, 25, 90, 137, 217
LmnI	GCTCC	1 cut(s)	404
LweI	GCATC	3 cut(s)	107, 256, 436
MaeII	ACGT	6 cut(s)	174, 213, 282, 294, 351, 391
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	5 cut(s)	15, 27, 92, 139, 219
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	5 cut(s)	13, 25, 90, 137, 217
MboII	GAAGA	3 cut(s)	112, 145, 271
MflI	RGATCY	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	277
Mly113I	GGCGCC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	372, 395
Mox20I	TGGCCA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	277
MslI	CAYNNNNRTG	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	277
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	2 cut(s)	222, 345
MspR9I	CCNGG	3 cut(s)	55, 222, 346
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	4 cut(s)	238, 240, 245, 362
MwoI	GCNNNNNNNGC	5 cut(s)	117, 242, 244, 361, 370
NarI	GGCGCC	1 cut(s)	338
NciI	CCSGG	2 cut(s)	222, 346
NdeII	GATC	5 cut(s)	13, 25, 90, 137, 217
NlaIV	GGNNCC	4 cut(s)	219, 339, 369, 383
OliI	CACNNNNGTG	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	157
PauI	GCGCGC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 288
PctI	GAATGC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	316
PluTI	GGCGCC	1 cut(s)	341
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
Ppu21I	YACGTR	3 cut(s)	214, 352, 392
PpuMI	RGGWCCY	1 cut(s)	367
PshAI	GACNNNNGTC	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	53
PspCI	CACGTG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	4 cut(s)	219, 339, 369, 383
PspPI	GGNCC	3 cut(s)	178, 187, 367
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	217
PteI	GCGCGC	1 cut(s)	236
RsaI	GTAC	2 cut(s)	326, 350
RsaNI	GTAC	2 cut(s)	325, 349
RseI	CAYNNNNRTG	1 cut(s)	407
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	5 cut(s)	13, 25, 90, 137, 217
Sau96I	GGNCC	3 cut(s)	178, 187, 367
ScrFI	CCNGG	3 cut(s)	55, 222, 346
SfaNI	GCATC	3 cut(s)	107, 256, 436
SfoI	GGCGCC	1 cut(s)	339
SinI	GGWCC	2 cut(s)	178, 367
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	2 cut(s)	40, 59
SmoI	CTYRAG	2 cut(s)	40, 59
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	5 cut(s)	124, 181, 315, 355, 371
SspDI	GGCGCC	1 cut(s)	337
StyD4I	CCNGG	3 cut(s)	53, 220, 344
TaaI	ACNGT	2 cut(s)	85, 202
TaiI	ACGT	6 cut(s)	177, 216, 285, 297, 354, 394
TasI	AATT	1 cut(s)	74
TauI	GCSGC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	167, 450
TspGWI	ACGGA	1 cut(s)	419
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	178, 367
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.