Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015868

Physical Location & Seq

Genomic Coordinates Reverse (-)

18204631 .. 18206684

Gene Structure 2054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTTTTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATTTCGCCAATAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCCTCTTTGTGATATTTGCGGGGAGAGGCGTGCATTATTATTTTGCCAAGAAGACAGAGCAATACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAATAGATTCCTCCTTACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTCCAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAGTATCGAGCGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAGCAATTGCTATTATGGGATAGAAGAAAACTACCATCACGTGAGCGATTCGGGGTCGGGATCGGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGAGGATTTGCTTGAACACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAATAACAGTGAGTCTTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAGGGTTTTGGGATCACAAACCCTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009741 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010099 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1900457 GO:1900458 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

242

Amino Acids

26.78

Weight (kDa)

6.04

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	55 - 92	9.3e-08	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0015868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39070
fragaria_vesca	FvH4_2g10070
malus_domestica	MD10G1066000.v1.1
prunus_persica	Prupe.8G087900_v2.0.a1
pyrus_communis	pycom05g04940 pycom10g05150
rosa_chinensis	RchiOBHm_Chr6g0267001
rosa_laevigata	RLG00000014052
rosa_multiflora	Rmu_sc0017071.1_g000007
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh6AG149900 Rh6BG150800 Rh6CG146000 Rh6DG134900
rosa_wichuraiana	Rw6G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	56, 183
AclWI	GGATC	2 cut(s)	532, 717
AcvI	CACGTG	1 cut(s)	505
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	2 cut(s)	157, 599
AluBI	AGCT	5 cut(s)	38, 68, 263, 420, 447
AluI	AGCT	5 cut(s)	38, 68, 263, 420, 447
Alw21I	GWGCWC	3 cut(s)	273, 422, 449
Alw26I	GTCTC	2 cut(s)	557, 619
AlwI	GGATC	2 cut(s)	532, 717
Ama87I	CYCGRG	1 cut(s)	415
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	65, 362, 365
AsiSI	GCGATCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	2 cut(s)	118, 573
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	422, 449
BauI	CACGAG	1 cut(s)	463
BbrPI	CACGTG	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	3 cut(s)	273, 422, 449
BbvI	GCAGC	3 cut(s)	77, 349, 352
BccI	CCATC	4 cut(s)	507, 553, 668, 699
BcnI	CCSGG	2 cut(s)	118, 573
BcoDI	GTCTC	2 cut(s)	557, 619
BfaI	CTAG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	3 cut(s)	66, 363, 366
BlsI	GCNGC	3 cut(s)	67, 364, 367
Bme1390I	CCNGG	2 cut(s)	118, 573
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	118, 573
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	222
BpuMI	CCSGG	2 cut(s)	118, 573
BsaAI	YACGTR	1 cut(s)	505
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse118I	RCCGGY	1 cut(s)	302
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	77, 349, 352
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	3 cut(s)	273, 422, 449
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	4 cut(s)	117, 130, 303, 572
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	2 cut(s)	557, 619
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	425
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	3 cut(s)	273, 422, 449
Bsp1407I	TGTACA	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	85, 312, 524, 709
BspACI	CCGC	2 cut(s)	56, 183
BspANI	GGCC	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	532, 717
BspQI	GCTCTTC	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	302
BssMI	GATC	4 cut(s)	85, 312, 524, 709
BssSI	CACGAG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	463
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	454
BstAUI	TGTACA	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	4 cut(s)	88, 315, 527, 712
BstMAI	GTCTC	2 cut(s)	557, 619
BstMBI	GATC	4 cut(s)	85, 312, 524, 709
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	116, 571
BstV1I	GCAGC	3 cut(s)	77, 349, 352
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	658
Cac8I	GCNNGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	1 cut(s)	92
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	4 cut(s)	87, 314, 526, 711
DpnII	GATC	4 cut(s)	85, 312, 524, 709
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Ecl136II	GAGCTC	2 cut(s)	420, 447
Eco24I	GRGCYC	2 cut(s)	422, 449
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	2 cut(s)	420, 447
Eco72I	CACGTG	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	415
EcoICRI	GAGCTC	2 cut(s)	420, 447
EcoO109I	RGGNCCY	1 cut(s)	412
EcoT38I	GRGCYC	2 cut(s)	422, 449
FaeI	CATG	1 cut(s)	95
FaiI	YATR	7 cut(s)	93, 232, 480, 545, 621, 663, 672
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	1 cut(s)	91
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	3 cut(s)	66, 363, 366
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	2 cut(s)	422, 449
Fsp4HI	GCNGC	3 cut(s)	66, 363, 366
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	3 cut(s)	66, 363, 366
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	4 cut(s)	117, 130, 303, 572
Hin1II	CATG	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	3 cut(s)	291, 512, 656
HpaII	CCGG	4 cut(s)	117, 130, 303, 572
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	3 cut(s)	415, 522, 726
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	615
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	3 cut(s)	197, 234, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	4 cut(s)	85, 312, 524, 709
LguI	GCTCTTC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	130, 143, 316, 522, 585
Lsp1109I	GCAGC	3 cut(s)	77, 349, 352
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	4 cut(s)	87, 314, 526, 711
MboI	GATC	4 cut(s)	85, 312, 524, 709
MboII	GAAGA	7 cut(s)	16, 44, 227, 441, 444, 500, 672
MfeI	CAATTG	1 cut(s)	469
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	3 cut(s)	273, 422, 449
MluCI	AATT	3 cut(s)	349, 469, 686
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	2 cut(s)	378, 557
MseI	TTAA	1 cut(s)	309
MspI	CCGG	4 cut(s)	117, 130, 303, 572
MspR9I	CCNGG	2 cut(s)	118, 573
MunI	CAATTG	1 cut(s)	469
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	2 cut(s)	118, 573
NdeII	GATC	4 cut(s)	85, 312, 524, 709
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	414
NmeAIII	GCCGAG	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	291, 512
PkrI	GCNGC	3 cut(s)	67, 364, 367
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	1 cut(s)	664
PmaCI	CACGTG	1 cut(s)	505
PmlI	CACGTG	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	664
Ppu21I	YACGTR	1 cut(s)	505
PpuMI	RGGWCCY	1 cut(s)	412
Psp124BI	GAGCTC	2 cut(s)	422, 449
Psp5II	RGGWCCY	1 cut(s)	412
PspCI	CACGTG	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	412
PspPPI	RGGWCCY	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	312
PvuI	CGATCG	1 cut(s)	88
RgaI	GCGATCGC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SacI	GAGCTC	2 cut(s)	422, 449
SapI	GCTCTTC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	66, 363, 366
Sau3AI	GATC	4 cut(s)	85, 312, 524, 709
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	2 cut(s)	118, 573
SduI	GDGCHC	3 cut(s)	273, 422, 449
SetI	ASST	9 cut(s)	40, 70, 265, 414, 422, 438, 449, 507, 541
SfaAI	GCGATCGC	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	151
SgfI	GCGATCGC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	412
Sse9I	AATT	3 cut(s)	349, 469, 686
SsiI	CCGC	2 cut(s)	56, 183
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	2 cut(s)	422, 449
StyD4I	CCNGG	2 cut(s)	116, 571
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	376, 404, 455
TasI	AATT	3 cut(s)	349, 469, 686
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	2 cut(s)	291, 512
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	3 cut(s)	65, 362, 365
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	17, 75, 86
TspRI	CASTG	1 cut(s)	658
VpaK11BI	GGWCC	1 cut(s)	412
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.