Prupe.8G087900_v2.0.a1

B-box zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015868
Physical Location & Seq
Reverse (-)
12106571 .. 12108498
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G087900.1

Sequence Viewer

Length: 627 bp
ATGAAGATCCGGTGTGATGTGTGCGAGAAAGAAGAGGCCACTGTTTTCTGCTCTGCAGATGAAGCTGCTCTTTGCGATGTCTGTGATCGCCGTGTTCACTACGCCAACAAGCTGGCCGGCAAGCACAAGCGCTTCTGTCTTCTCCACCCAACTTTCAAAGACTCCCCTCTCTGTGATATATGCCAGGAGAGGCGCGGATTTCTGTTTTGTCAACAAGACAGAGCGATTCTTTGCAGAGAATGCGACTTTTCGATTCACAAAACCAATGAGCACACACAGAAGCACAACAGGTTTGTTCTTCCAGGCGTTAAGCTCTCAGCTGCTGCTTCTTTATATCCAACCTCATCCTCCTCATGCTCTGGCTTCTCTCAATTGGCCAATACCACTGATGCAAGAGCCTCCAAGTCTTCTTCAAAGAGACCCAAAACAGTTTCTGATAAGGCCTTGAATTGCTCTCCATCAGTGGAGCAAACGACGTCGTCTTCCTCCTACAAGACAGGAGAGAATTGTGGCAGTGACAATGGCTCTGTTTCAACAAGCAGCATATCAGAGTATCTGATGGAGACGCTGCCGGGGTGGCATGTAGAAGACTTTTTCGATTTTTCGTTTGCTCCCGATGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

209

Amino Acids

23.01

Weight (kDa)

6.64

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39070
fragaria_vesca FvH4_2g10070
malus_domestica MD10G1066000.v1.1
prunus_persica Prupe.8G087900_v2.0.a1
pyrus_communis pycom05g04940 pycom10g05150
rosa_chinensis RchiOBHm_Chr6g0267001
rosa_laevigata RLG00000014052
rosa_multiflora Rmu_sc0017071.1_g000007
rosa_rugosa Rorug06G0028400
rosa_samantha Rh6AG149900 Rh6BG150800 Rh6CG146000 Rh6DG134900
rosa_wichuraiana Rw6G012980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 479
AccII CGCG 1 cut(s) 195
AciI CCGC 1 cut(s) 195
AcoI YGGCCR 2 cut(s) 114, 375
AcyI GRCGYC 1 cut(s) 476
AfeI AGCGCT 1 cut(s) 131
AgsI TTSAA 4 cut(s) 157, 414, 448, 534
AjnI CCWGG 2 cut(s) 183, 301
AluBI AGCT 4 cut(s) 65, 112, 313, 320
AluI AGCT 4 cut(s) 65, 112, 313, 320
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 412, 557
AlwNI CAGNNNCTG 2 cut(s) 323, 434
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 4 cut(s) 36, 114, 375, 441
ApeKI GCWGC 5 cut(s) 65, 320, 323, 540, 568
AspLEI GCGC 2 cut(s) 132, 195
AsuC2I CCSGG 1 cut(s) 573
BalI TGGCCA 1 cut(s) 377
BbsI GAAGAC 4 cut(s) 131, 399, 474, 594
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 5 cut(s) 52, 307, 310, 552, 555
BccI CCATC 3 cut(s) 466, 553, 611
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 2 cut(s) 185, 303
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 2 cut(s) 412, 557
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 577
BisI GCNGC 5 cut(s) 66, 321, 324, 541, 569
BlsI GCNGC 5 cut(s) 67, 322, 325, 542, 570
Bme1390I CCNGG 3 cut(s) 185, 303, 573
BmrFI CCNGG 3 cut(s) 185, 303, 573
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 4 cut(s) 131, 399, 474, 594
BpuMI CCSGG 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 476
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 572
BsaWI WCCGGW 1 cut(s) 9
Bse118I RCCGGY 1 cut(s) 116
BseBI CCWGG 2 cut(s) 185, 303
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 5 cut(s) 52, 307, 310, 552, 555
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 4 cut(s) 38, 116, 377, 443
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 3 cut(s) 10, 117, 572
BsmAI GTCTC 2 cut(s) 412, 557
BsmBI CGTCTC 1 cut(s) 557
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 4 cut(s) 38, 116, 377, 443
Bso31I GGTCTC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 6, 85
BspACI CCGC 1 cut(s) 195
BspANI GGCC 4 cut(s) 38, 116, 377, 443
BspCNI CTCAG 1 cut(s) 329
BspFNI CGCG 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 2 cut(s) 6, 85
BssNI GRCGYC 1 cut(s) 476
Bst2UI CCWGG 2 cut(s) 185, 303
Bst4CI ACNGT 2 cut(s) 43, 430
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 476
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 3 cut(s) 114, 118, 122
BstDEI CTNAG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 132, 195
BstKTI GATC 2 cut(s) 9, 88
BstMAI GTCTC 2 cut(s) 412, 557
BstMBI GATC 2 cut(s) 6, 85
BstMWI GCNNNNNNNGC 3 cut(s) 62, 240, 577
BstNI CCWGG 2 cut(s) 185, 303
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 3 cut(s) 183, 301, 571
BstSFI CTRYAG 1 cut(s) 54
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 5 cut(s) 52, 307, 310, 552, 555
BstV2I GAAGAC 4 cut(s) 131, 399, 474, 594
BstX2I RGATCY 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 4 cut(s) 38, 116, 377, 443
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 344
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 4 cut(s) 39, 384, 468, 520
Cac8I GCNNGC 3 cut(s) 114, 118, 122
CaiI CAGNNNCTG 2 cut(s) 323, 434
CfoI GCGC 2 cut(s) 132, 195
Cfr10I RCCGGY 1 cut(s) 116
CseI GACGC 1 cut(s) 574
CviAII CATG 2 cut(s) 354, 581
DdeI CTNAG 1 cut(s) 316
DpnI GATC 2 cut(s) 8, 87
DpnII GATC 2 cut(s) 6, 85
EaeI YGGCCR 2 cut(s) 114, 375
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 443
Eco31I GGTCTC 1 cut(s) 412
Eco47III AGCGCT 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 183, 301
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 2 cut(s) 357, 584
FaiI YATR 6 cut(s) 179, 181, 334, 355, 545, 582
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FatI CATG 2 cut(s) 353, 580
Fnu4HI GCNGC 5 cut(s) 66, 321, 324, 541, 569
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 5 cut(s) 66, 321, 324, 541, 569
GlaI GCGC 2 cut(s) 131, 194
GluI GCNGC 5 cut(s) 66, 321, 324, 541, 569
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 4 cut(s) 38, 116, 377, 443
HapII CCGG 3 cut(s) 10, 117, 572
HgaI GACGC 1 cut(s) 574
HhaI GCGC 2 cut(s) 132, 195
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 2 cut(s) 357, 584
Hin6I GCGC 2 cut(s) 130, 193
HinP1I GCGC 2 cut(s) 130, 193
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HinfI GANTC 3 cut(s) 161, 226, 253
HpaII CCGG 3 cut(s) 10, 117, 572
Hpy166II GTNNAC 2 cut(s) 97, 212
Hpy188I TCNGA 4 cut(s) 436, 550, 558, 626
Hpy188III TCNNGA 1 cut(s) 614
Hpy8I GTNNAC 2 cut(s) 97, 212
Hpy99I CGWCG 2 cut(s) 478, 481
HpyCH4III ACNGT 2 cut(s) 43, 430
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 3 cut(s) 56, 234, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 240, 577
HpyF3I CTNAG 1 cut(s) 316
HpySE526I ACGT 1 cut(s) 476
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 2 cut(s) 357, 584
HspAI GCGC 2 cut(s) 130, 193
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 6, 85
LmnI GCTCC 2 cut(s) 466, 616
Lsp1109I GCAGC 5 cut(s) 52, 307, 310, 552, 555
LweI GCATC 1 cut(s) 379
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 1 cut(s) 515
MalI GATC 2 cut(s) 8, 87
MboI GATC 2 cut(s) 6, 85
MboII GAAGA 8 cut(s) 16, 44, 131, 290, 399, 402, 474, 599
MfeI CAATTG 1 cut(s) 371
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 273
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 3 cut(s) 371, 448, 505
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 8 cut(s) 28, 177, 183, 352, 358, 361, 409, 496
Mox20I TGGCCA 1 cut(s) 377
MroNI GCCGGC 1 cut(s) 116
MscI TGGCCA 1 cut(s) 377
MseI TTAA 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 3 cut(s) 10, 117, 572
MspR9I CCNGG 3 cut(s) 185, 303, 573
MunI CAATTG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 245
MvaI CCWGG 2 cut(s) 185, 303
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 3 cut(s) 62, 240, 577
NaeI GCCGGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 573
NdeII GATC 2 cut(s) 6, 85
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 2 cut(s) 357, 584
NmuCI GTSAC 1 cut(s) 515
NspI RCATGY 1 cut(s) 584
PceI AGGCCT 1 cut(s) 443
PctI GAATGC 1 cut(s) 245
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 226, 253
PflFI GACNNNGTC 1 cut(s) 478
PkrI GCNGC 5 cut(s) 67, 322, 325, 542, 570
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp6I CCWGG 2 cut(s) 183, 301
PspGI CCWGG 2 cut(s) 183, 301
PstI CTGCAG 1 cut(s) 58
PstNI CAGNNNCTG 2 cut(s) 323, 434
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 478
PvuII CAGCTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 5 cut(s) 66, 321, 324, 541, 569
Sau3AI GATC 2 cut(s) 6, 85
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 3 cut(s) 185, 303, 573
SduI GDGCHC 1 cut(s) 273
SetI ASST 7 cut(s) 67, 114, 293, 315, 322, 344, 479
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 54
Sse9I AATT 3 cut(s) 371, 448, 505
SseBI AGGCCT 1 cut(s) 443
SsiI CCGC 1 cut(s) 195
StuI AGGCCT 1 cut(s) 443
StyD4I CCNGG 3 cut(s) 183, 301, 571
TaaI ACNGT 2 cut(s) 43, 430
TaiI ACGT 1 cut(s) 479
TaqI TCGA 2 cut(s) 251, 597
TasI AATT 3 cut(s) 371, 448, 505
TfiI GAWTC 2 cut(s) 226, 253
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 4 cut(s) 46, 391, 468, 520
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 5 cut(s) 65, 320, 323, 540, 568
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 17, 75
TspRI CASTG 4 cut(s) 46, 391, 468, 520
Tth111I GACNNNGTC 1 cut(s) 478
XceI RCATGY 1 cut(s) 584
ZraI GACGTC 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.