Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015868

Physical Location & Seq

Genomic Coordinates Reverse (-)

5832123 .. 5833058

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAAGATCCAGTGCGACGTGTGTGACAAAGAAGAGGCAACTGTCTTCTGCTCTGCCGATGAAGCCGCTCTTTGTGACGTCTGCGATTGCCAAATTCACCATACAAACAAACTTGCCAGCAAACACAAGCGCTTCTCTGTTCTCCACCCAACTTTCAAAGATTCCCCTCTTTGTGATATCTGTCAGGAAAGGCGAGGATTTCTCTTTTGTCAAGAAGATAGAGCAATTCTCTGCAGGGAGTGTGACCATTCGATTCACAAATCGAACGAACACACACAGAAACACAGCAGGTTTCTTCTGCCGGGTGTCAAGCTTTCTGCGGCTTCTTCTTTGTATCCAACTTCATCAGCCTGCTCCAACTTCCCCGAAGTTATGACCGCAAAAATTAATGATGCAAGAGCCTCAAAGTCATCCACAAAGAGACAGAGAACAGTTTCGCCCAACAAAATCTTGAGTTCTCCTTCTCCTTCGTTATTGGAACAACCAATCTCATCTTCGTCAGGCAAGAAGGTAGAAGAGAATTATTGTTTCAATGACTATGGTTCGGGTTCGACGAGCAGCATATCAGAGTATTTGATGGAGAAGCTCCCCGGGTGGCATGTGGAAGACCTTGATTTTTCATATGATCATTCCAATGCTTTCTGTGAGGTTGGAAGTGCACATTACTGTTGGTATTTGACAGTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009741 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010099 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1900457 GO:1900458 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

230

Amino Acids

25.71

Weight (kDa)

6.25

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39070
fragaria_vesca	FvH4_2g10070
malus_domestica	MD10G1066000.v1.1
prunus_persica	Prupe.8G087900_v2.0.a1
pyrus_communis	pycom05g04940 pycom10g05150
rosa_chinensis	RchiOBHm_Chr6g0267001
rosa_laevigata	RLG00000014052
rosa_multiflora	Rmu_sc0017071.1_g000007
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh6AG149900 Rh6BG150800 Rh6CG146000 Rh6DG134900
rosa_wichuraiana	Rw6G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	279
AccBSI	CCGCTC	1 cut(s)	68
AciI	CCGC	3 cut(s)	66, 320, 378
AcsI	RAATTY	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	78
AfeI	AGCGCT	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	157, 532
AjiI	CACGTC	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	478, 510
AluBI	AGCT	2 cut(s)	313, 586
AluI	AGCT	2 cut(s)	313, 586
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	1 cut(s)	415
Alw44I	GTGCAC	1 cut(s)	657
Ama87I	CYCGRG	1 cut(s)	590
Aor51HI	AGCGCT	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	1 cut(s)	93
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	132
AsuC2I	CCSGG	3 cut(s)	303, 591, 592
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	590
BaeGI	GKGCMC	1 cut(s)	661
BbsI	GAAGAC	2 cut(s)	37, 612
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	1 cut(s)	571
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	625
BcnI	CCSGG	3 cut(s)	303, 591, 592
BcoDI	GTCTC	1 cut(s)	415
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	3 cut(s)	66, 321, 559
BlsI	GCNGC	3 cut(s)	67, 322, 560
Bme1390I	CCNGG	3 cut(s)	303, 591, 592
BmeT110I	CYCGRG	1 cut(s)	590
BmgBI	CACGTC	1 cut(s)	19
BmrFI	CCNGG	3 cut(s)	303, 591, 592
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	2 cut(s)	37, 612
BplI	GAGNNNNNCTC	4 cut(s)	186, 218, 213, 245
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	3 cut(s)	303, 591, 592
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	589, 590
Bse1I	ACTGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	589, 590
BseGI	GGATG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	661
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	2 cut(s)	302, 591
BsmAI	GTCTC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	590
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	2 cut(s)	6, 625
BspACI	CCGC	3 cut(s)	66, 320, 378
BspMAI	CTGCAG	1 cut(s)	236
BspMI	ACCTGC	1 cut(s)	279
BsrBI	CCGCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	589, 590
BssMI	GATC	2 cut(s)	6, 625
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	4 cut(s)	43, 433, 668, 682
Bst6I	CTCTTC	2 cut(s)	27, 510
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	118, 352
BstF5I	GGATG	1 cut(s)	410
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	9, 628
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	2 cut(s)	6, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	3 cut(s)	301, 589, 590
BstSFI	CTRYAG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	1 cut(s)	570
BstV2I	GAAGAC	2 cut(s)	37, 612
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	118, 352
CfoI	GCGC	1 cut(s)	132
Cfr9I	CCCGGG	1 cut(s)	590
CviAII	CATG	1 cut(s)	599
CviJI	RGCY	6 cut(s)	65, 313, 323, 350, 401, 586
CviKI_1	RGCY	6 cut(s)	65, 313, 323, 350, 401, 586
DpnI	GATC	2 cut(s)	8, 627
DpnII	GATC	2 cut(s)	6, 625
Eam1104I	CTCTTC	2 cut(s)	27, 510
EarI	CTCTTC	2 cut(s)	27, 510
Eco32I	GATATC	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	590
EcoRV	GATATC	1 cut(s)	178
FaeI	CATG	1 cut(s)	602
FaiI	YATR	7 cut(s)	102, 374, 540, 563, 600, 622, 624
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	1 cut(s)	598
FauNDI	CATATG	1 cut(s)	622
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	3 cut(s)	66, 321, 559
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	66, 321, 559
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	3 cut(s)	66, 321, 559
HaeII	RGCGCY	1 cut(s)	133
HapII	CCGG	2 cut(s)	302, 591
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	602
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	2 cut(s)	161, 253
HpaII	CCGG	2 cut(s)	302, 591
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	659, 685
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	3 cut(s)	185, 212, 451
Hpy8I	GTNNAC	2 cut(s)	659, 685
Hpy99I	CGWCG	2 cut(s)	20, 556
HpyAV	CCTTC	3 cut(s)	471, 477, 502
HpyCH4III	ACNGT	4 cut(s)	43, 433, 668, 682
HpyCH4IV	ACGT	2 cut(s)	18, 78
HpyCH4V	TGCA	3 cut(s)	234, 395, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpySE526I	ACGT	2 cut(s)	18, 78
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	602
HspAI	GCGC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	2 cut(s)	6, 625
LmnI	GCTCC	2 cut(s)	359, 591
LpnPI	CCDG	9 cut(s)	23, 130, 170, 220, 274, 315, 364, 486, 604
Lsp1109I	GCAGC	1 cut(s)	570
LweI	GCATC	1 cut(s)	382
MaeII	ACGT	2 cut(s)	18, 78
MaeIII	GTNAC	3 cut(s)	23, 74, 242
MalI	GATC	2 cut(s)	8, 627
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	2 cut(s)	6, 625
MboII	GAAGA	9 cut(s)	16, 37, 44, 227, 287, 318, 486, 527, 617
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	4 cut(s)	93, 225, 384, 520
MmeI	TCCRAC	3 cut(s)	362, 381, 631
MnlI	CCTC	5 cut(s)	28, 177, 188, 412, 640
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	633
MspI	CCGG	2 cut(s)	302, 591
MspR9I	CCNGG	3 cut(s)	303, 591, 592
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	3 cut(s)	303, 591, 592
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	2 cut(s)	6, 625
NlaIII	CATG	1 cut(s)	602
NmuCI	GTSAC	3 cut(s)	23, 74, 242
NspI	RCATGY	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	161, 253
PkrI	GCNGC	3 cut(s)	67, 322, 560
PshBI	ATTAAT	1 cut(s)	387
PstI	CTGCAG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	3 cut(s)	66, 321, 559
Sau3AI	GATC	2 cut(s)	6, 625
ScrFI	CCNGG	3 cut(s)	303, 591, 592
SduI	GDGCHC	1 cut(s)	661
SetI	ASST	8 cut(s)	21, 81, 293, 315, 513, 588, 612, 651
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	232
SmaI	CCCGGG	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	4 cut(s)	93, 225, 384, 520
SsiI	CCGC	3 cut(s)	66, 320, 378
StyD4I	CCNGG	3 cut(s)	301, 589, 590
TaaI	ACNGT	4 cut(s)	43, 433, 668, 682
TaiI	ACGT	2 cut(s)	21, 81
TaqI	TCGA	3 cut(s)	251, 263, 551
TasI	AATT	4 cut(s)	93, 225, 384, 520
TauI	GCSGC	2 cut(s)	68, 323
TfiI	GAWTC	2 cut(s)	161, 253
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	3 cut(s)	23, 74, 242
TseI	GCWGC	1 cut(s)	558
Tsp45I	GTSAC	3 cut(s)	23, 74, 242
TspDTI	ATGAA	4 cut(s)	17, 75, 333, 609
TspMI	CCCGGG	1 cut(s)	590
TspRI	CASTG	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	657
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	1 cut(s)	602
XmaI	CCCGGG	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	433
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.