Rh6BG150800

B-Box-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015868
Physical Location & Seq
Forward (+)
24241396 .. 24243297
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG150800.1

Sequence Viewer

Length: 657 bp
ATGAAGATCCGGTGCGATGTGTGTGACAAAACTGAGGCCACTGTGTTCTGCTCAGCTGATGAAGCAGCTCTCTGCGATGTCTGTGATCGCCGTGTTCACCATGCAAATAAGCTTGCAAGCAAACACAAGCGCTTTTTTCTTCTCCAACCAACTTGCAAATTAGACTCCCCTCATTGTGATATCTGTCAGGAAAGGCGCGGATTCTTCTTCTGTCAAGAAGACAGAGCAATTCTTTGCAGGGAATGTGACCATTCAATCCACAACGCCAATGAACACACTAAGAAACACAACAGGTTTCTTCTCGCTGGTGTAAAGCTCTCTGCTGATTCTACTCTGTATCCAATTTCATCATCATCATCATGCTCAACCTTCTCTGATGACATAGTCATCATCAACAGTAGTGATCATGCAAGAGTAGCCTCCAAGTCATCAACAAAGAGACCTAGAACAAGATGCAATGAACAAAAATTGTCATCCTCATCATATAAGGTAGAGGATAATTGTTCTATCAGTGACAATGGTTCGGTGATTTCAACAAACAGCATATCCGAGTACTTGATGGGAGACCAGATCACCGAGTGGCGTGTGGAAGACCTTCTTGATGTCTCATTTGAATTTGATGGTTTCTGTGAGGTTGGAAGTGCACCTTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

218

Amino Acids

24.54

Weight (kDa)

5.98

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 3 - 44 3.8e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39070
fragaria_vesca FvH4_2g10070
malus_domestica MD10G1066000.v1.1
prunus_persica Prupe.8G087900_v2.0.a1
pyrus_communis pycom05g04940 pycom10g05150
rosa_chinensis RchiOBHm_Chr6g0267001
rosa_laevigata RLG00000014052
rosa_multiflora Rmu_sc0017071.1_g000007
rosa_rugosa Rorug06G0028400
rosa_samantha Rh6AG149900 Rh6BG150800 Rh6CG146000 Rh6DG134900
rosa_wichuraiana Rw6G012980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 198
AciI CCGC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 614
AdeI CACNNNGTG 1 cut(s) 579
AfaI GTAC 1 cut(s) 554
AfeI AGCGCT 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 3 cut(s) 255, 534, 614
AluBI AGCT 4 cut(s) 56, 68, 112, 316
AluI AGCT 4 cut(s) 56, 68, 112, 316
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 3 cut(s) 433, 558, 610
Alw44I GTGCAC 1 cut(s) 642
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 36
ApaLI GTGCAC 1 cut(s) 642
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 2 cut(s) 132, 198
AsuHPI GGTGA 3 cut(s) 89, 538, 565
BaeGI GKGCMC 1 cut(s) 646
BbsI GAAGAC 2 cut(s) 225, 597
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 1 cut(s) 77
BccI CCATC 2 cut(s) 553, 614
BceAI ACGGC 1 cut(s) 75
BciVI GTATCC 1 cut(s) 348
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 3 cut(s) 433, 558, 610
BfaI CTAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 133
BfuI GTATCC 1 cut(s) 348
BisI GCNGC 1 cut(s) 66
BlpI GCTNAGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 554
BmsI GCATC 1 cut(s) 443
BpiI GAAGAC 2 cut(s) 225, 597
Bpu1102I GCTNAGC 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 433, 558
BsaWI WCCGGW 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 463
BseGI GGATG 1 cut(s) 473
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 24, 66
BseSI GKGCMC 1 cut(s) 646
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 1 cut(s) 10
BsmAI GTCTC 3 cut(s) 433, 558, 610
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 2 cut(s) 433, 558
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 4 cut(s) 6, 85, 403, 570
Bsp1720I GCTNAGC 1 cut(s) 52
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 25, 65
BspFNI CGCG 1 cut(s) 198
BspTNI GGTCTC 2 cut(s) 433, 558
BsrDI GCAATG 1 cut(s) 463
BssMI GATC 4 cut(s) 6, 85, 403, 570
Bst4CI ACNGT 2 cut(s) 43, 398
BstC8I GCNNGC 2 cut(s) 114, 118
BstDEI CTNAG 3 cut(s) 33, 52, 279
BstF5I GGATG 1 cut(s) 473
BstFNI CGCG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 132, 198
BstKTI GATC 4 cut(s) 9, 88, 406, 573
BstMAI GTCTC 3 cut(s) 433, 558, 610
BstMBI GATC 4 cut(s) 6, 85, 403, 570
BstMWI GCNNNNNNNGC 2 cut(s) 62, 416
BstNSI RCATGY 1 cut(s) 655
BstSLI GKGCMC 1 cut(s) 646
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 2 cut(s) 225, 597
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 38
BtgZI GCGATG 2 cut(s) 30, 90
BtsCI GGATG 1 cut(s) 473
BtsIMutI CAGTG 2 cut(s) 39, 517
Cac8I GCNNGC 2 cut(s) 114, 118
CfoI GCGC 2 cut(s) 132, 198
Csp6I GTAC 1 cut(s) 553
CviAII CATG 4 cut(s) 101, 360, 407, 652
CviJI RGCY 6 cut(s) 38, 56, 68, 112, 316, 419
CviKI_1 RGCY 6 cut(s) 38, 56, 68, 112, 316, 419
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 3 cut(s) 33, 52, 279
DpnI GATC 4 cut(s) 8, 87, 405, 572
DpnII GATC 4 cut(s) 6, 85, 403, 570
DraIII CACNNNGTG 1 cut(s) 579
Eco31I GGTCTC 2 cut(s) 433, 558
Eco32I GATATC 1 cut(s) 181
Eco47III AGCGCT 1 cut(s) 131
EcoRV GATATC 1 cut(s) 181
FaeI CATG 4 cut(s) 104, 363, 410, 655
FaiI YATR 8 cut(s) 102, 361, 383, 408, 484, 486, 545, 653
FalI AAGNNNNNCTT 3 cut(s) 582, 614, 631
FatI CATG 4 cut(s) 100, 359, 406, 651
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 460
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 444
GlaI GCGC 2 cut(s) 131, 197
GluI GCNGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 10
HhaI GCGC 2 cut(s) 132, 198
Hin1II CATG 4 cut(s) 104, 363, 410, 655
Hin6I GCGC 2 cut(s) 130, 196
HinP1I GCGC 2 cut(s) 130, 196
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 164, 201, 326
HpaII CCGG 1 cut(s) 10
HphI GGTGA 3 cut(s) 89, 538, 565
Hpy166II GTNNAC 2 cut(s) 97, 644
Hpy188I TCNGA 2 cut(s) 376, 550
Hpy188III TCNNGA 3 cut(s) 188, 215, 599
Hpy8I GTNNAC 2 cut(s) 97, 644
HpyAV CCTTC 2 cut(s) 379, 605
HpyCH4III ACNGT 2 cut(s) 43, 398
HpyCH4V TGCA 7 cut(s) 104, 116, 156, 237, 410, 456, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 416
HpyF3I CTNAG 3 cut(s) 33, 52, 279
Hsp92II CATG 4 cut(s) 104, 363, 410, 655
HspAI GCGC 2 cut(s) 130, 196
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 4 cut(s) 6, 85, 403, 570
LpnPI CCDG 6 cut(s) 23, 173, 223, 277, 291, 581
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 443
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 3 cut(s) 23, 245, 512
MalI GATC 4 cut(s) 8, 87, 405, 572
MboI GATC 4 cut(s) 6, 85, 403, 570
MboII GAAGA 7 cut(s) 16, 131, 196, 199, 230, 290, 602
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 6 cut(s) 158, 228, 342, 467, 499, 614
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 169, 616
MnlI CCTC 6 cut(s) 28, 180, 430, 487, 487, 625
MroXI GAANNNNTTC 1 cut(s) 594
MslI CAYNNNNRTG 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 62, 416
NdeII GATC 4 cut(s) 6, 85, 403, 570
NlaIII CATG 4 cut(s) 104, 363, 410, 655
NmuCI GTSAC 3 cut(s) 23, 245, 512
NspI RCATGY 1 cut(s) 655
PciI ACATGT 1 cut(s) 651
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 2 cut(s) 201, 326
PflFI GACNNNGTC 1 cut(s) 383
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PscI ACATGT 1 cut(s) 651
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 1 cut(s) 358
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 4 cut(s) 6, 85, 403, 570
ScaI AGTACT 1 cut(s) 554
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 358
Sse9I AATT 6 cut(s) 158, 228, 342, 467, 499, 614
SsiI CCGC 1 cut(s) 198
SspMI CTAG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 43, 398
TasI AATT 6 cut(s) 158, 228, 342, 467, 499, 614
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 2 cut(s) 201, 326
TscAI CASTG 2 cut(s) 46, 517
TseFI GTSAC 3 cut(s) 23, 245, 512
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 3 cut(s) 23, 245, 512
TspDTI ATGAA 5 cut(s) 17, 75, 285, 336, 474
TspRI CASTG 2 cut(s) 46, 517
Tth111I GACNNNGTC 1 cut(s) 383
VneI GTGCAC 1 cut(s) 642
XapI RAATTY 1 cut(s) 614
XceI RCATGY 1 cut(s) 655
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.