FvH4_2g10070

B-Box-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015868
Physical Location & Seq
Forward (+)
8897464 .. 8899003
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10070.t1

Sequence Viewer

Length: 639 bp
ATGAAGATCCGGTGCAATTTTTGTGACAAAGCTGAGGCCACTGTGTTCTGCTCAGCTGATGAAGCAGCTCTCTGTGACGTCTGTGATCGCCGTGTTCACCATGCAAATAAGCTTGCAAGCAAACACAAGCGCTTTTTTCTTCTCCAACCAACCTGCAAAGACTCCCCTCAATGTGATATCTGTCAGGAAAGGCGTGGATTCCTCTTTTGTCAAGAAGACAGAGCCATTTTTTGCAGGGAATGCGACAATTCAATCCACAAAGCGAATGAACACACTCGAAAACACAATAGGTTTCTTCTCACTGGTGTAAAGCTTTCTGCTGATTCTACTCAGTATCCCCCATCATCATCATCATGCTCCTTCTCTAATGAAGTAGTCATCACCAACAGCACTGACCATGCAAGAGTAGCCTCCAAGTCATCGACAAAGAGACCTAGAACAGGATCCAATGAACAAACCTCATCATATAAGGTAGAGGAGAATTGTTCGCTCAGTGACAATGGTTCAGTGAGTTCGACAAACAGCATATCAGAGTACTTGATGGGAGACCAGATCACCGAGTGGCGTGTGGAAGACCTTCTTGATGTCTCATTTGATTTTGATAGCTTCTATGAGGCTAAAAGTGCACCTTACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

213

Amino Acids

23.96

Weight (kDa)

6.17

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 3 - 44 3.9e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39070
fragaria_vesca FvH4_2g10070
malus_domestica MD10G1066000.v1.1
prunus_persica Prupe.8G087900_v2.0.a1
pyrus_communis pycom05g04940 pycom10g05150
rosa_chinensis RchiOBHm_Chr6g0267001
rosa_laevigata RLG00000014052
rosa_multiflora Rmu_sc0017071.1_g000007
rosa_rugosa Rorug06G0028400
rosa_samantha Rh6AG149900 Rh6BG150800 Rh6CG146000 Rh6DG134900
rosa_wichuraiana Rw6G012980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 161
AclWI GGATC 2 cut(s) 438, 451
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 561
AfaI GTAC 1 cut(s) 536
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 1 cut(s) 252
AluBI AGCT 6 cut(s) 32, 56, 68, 112, 313, 606
AluI AGCT 6 cut(s) 32, 56, 68, 112, 313, 606
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 3 cut(s) 424, 540, 592
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 2 cut(s) 438, 451
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 36
ApaLI GTGCAC 1 cut(s) 624
ApeKI GCWGC 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 132
AsuHPI GGTGA 3 cut(s) 89, 373, 547
BaeGI GKGCMC 1 cut(s) 628
BamHI GGATCC 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 222, 579
Bbv12I GWGCWC 1 cut(s) 628
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 77
BccI CCATC 2 cut(s) 349, 535
BceAI ACGGC 1 cut(s) 75
BciVI GTATCC 1 cut(s) 345
BcoDI GTCTC 3 cut(s) 424, 540, 592
BfaI CTAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 161
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 1 cut(s) 66
BlpI GCTNAGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 536
BmiI GGNNCC 1 cut(s) 445
BpiI GAAGAC 2 cut(s) 222, 579
Bpu10I CCTNAGC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 2 cut(s) 424, 540
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 4 cut(s) 24, 66, 344, 505
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 491
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 628
BsiSI CCGG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 3 cut(s) 424, 540, 592
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 2 cut(s) 424, 540
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 4 cut(s) 6, 85, 443, 552
Bsp1720I GCTNAGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 4 cut(s) 25, 65, 343, 504
BspLI GGNNCC 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 2 cut(s) 438, 451
BspTNI GGTCTC 2 cut(s) 424, 540
BsrI ACTGG 1 cut(s) 307
BssMI GATC 4 cut(s) 6, 85, 443, 552
BssNI GRCGYC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 114, 118
BstDEI CTNAG 4 cut(s) 33, 52, 330, 491
BstENI CCTNNNNNAGG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 4 cut(s) 9, 88, 446, 555
BstMAI GTCTC 3 cut(s) 424, 540, 592
BstMBI GATC 4 cut(s) 6, 85, 443, 552
BstMWI GCNNNNNNNGC 4 cut(s) 62, 240, 407, 623
BstSLI GKGCMC 1 cut(s) 628
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 2 cut(s) 222, 579
BstX2I RGATCY 2 cut(s) 6, 443
BstYI RGATCY 2 cut(s) 6, 443
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 38
BtsIMutI CAGTG 5 cut(s) 39, 300, 390, 499, 513
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 114, 118
CfoI GCGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 535
CviAII CATG 3 cut(s) 101, 354, 398
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 4 cut(s) 33, 52, 330, 491
DpnI GATC 4 cut(s) 8, 87, 445, 554
DpnII GATC 4 cut(s) 6, 85, 443, 552
DraIII CACNNNGTG 1 cut(s) 561
Eco31I GGTCTC 2 cut(s) 424, 540
Eco32I GATATC 1 cut(s) 178
Eco47III AGCGCT 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 438
EcoRV GATATC 1 cut(s) 178
FaeI CATG 3 cut(s) 104, 357, 401
FaiI YATR 9 cut(s) 102, 355, 399, 466, 468, 527, 612, 635, 637
FalI AAGNNNNNCTT 3 cut(s) 564, 596, 613
FatI CATG 3 cut(s) 100, 353, 397
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 10
HhaI GCGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 104, 357, 401
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 2 cut(s) 110, 311
HinfI GANTC 3 cut(s) 161, 198, 323
HpaII CCGG 1 cut(s) 10
HphI GGTGA 3 cut(s) 89, 373, 547
Hpy166II GTNNAC 2 cut(s) 97, 626
Hpy188I TCNGA 1 cut(s) 532
Hpy188III TCNNGA 3 cut(s) 185, 212, 581
Hpy8I GTNNAC 2 cut(s) 97, 626
HpyAV CCTTC 2 cut(s) 370, 587
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 7 cut(s) 15, 104, 116, 156, 234, 401, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 240, 407, 623
HpyF3I CTNAG 4 cut(s) 33, 52, 330, 491
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 104, 357, 401
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 4 cut(s) 6, 85, 443, 552
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 7 cut(s) 23, 166, 170, 220, 288, 426, 563
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 3 cut(s) 23, 74, 494
MalI GATC 4 cut(s) 8, 87, 445, 554
MboI GATC 4 cut(s) 6, 85, 443, 552
MboII GAAGA 5 cut(s) 16, 131, 227, 287, 584
MflI RGATCY 2 cut(s) 6, 443
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 3 cut(s) 16, 247, 481
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 7 cut(s) 28, 177, 212, 421, 469, 469, 607
MroXI GAANNNNTTC 1 cut(s) 576
MslI CAYNNNNRTG 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 62, 240, 407, 623
NdeII GATC 4 cut(s) 6, 85, 443, 552
NlaIII CATG 3 cut(s) 104, 357, 401
NlaIV GGNNCC 1 cut(s) 445
NmuCI GTSAC 3 cut(s) 23, 74, 494
PctI GAATGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 198, 323
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 445
PsuI RGATCY 2 cut(s) 6, 443
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
RseI CAYNNNNRTG 1 cut(s) 352
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 4 cut(s) 6, 85, 443, 552
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 628
SmiMI CAYNNNNRTG 1 cut(s) 352
Sse9I AATT 3 cut(s) 16, 247, 481
SspMI CTAG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 81
TaqI TCGA 3 cut(s) 277, 422, 515
TasI AATT 3 cut(s) 16, 247, 481
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 2 cut(s) 198, 323
TscAI CASTG 5 cut(s) 46, 307, 397, 499, 513
TseFI GTSAC 3 cut(s) 23, 74, 494
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 3 cut(s) 23, 74, 494
TspDTI ATGAA 5 cut(s) 17, 75, 282, 384, 465
TspRI CASTG 5 cut(s) 46, 307, 397, 499, 513
VneI GTGCAC 1 cut(s) 624
XagI CCTNNNNNAGG 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 1 cut(s) 435
ZraI GACGTC 1 cut(s) 79
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.