RLG00000014052

B-Box-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015868
Physical Location & Seq
Reverse (-)
46218671 .. 46219756
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014052

Sequence Viewer

Length: 651 bp
ATGAAGATCCGGTGCGATGTGTGTGACAAAGCTGAGGCCACTGTGTTCTGCTCAGCTGATGAAGCAGCTCTCTGCGATGTCTGTGATCGCCGTGTTCACCATGCAAATAAGCTTGCAAGCAAACACAAGCGCTTCTTTCTTCTCCACCCAACGTGCAAAGACTCCCCTCATTGTGATATCTGTCAGAAAAGGCGCGGATTCCTCTTCTGTCAAGAAGACAGAGCAATTCTTTGCAGGGAATGTGACCATTCAATCCACAACGCCAATGAACACACTAAGAAACACAACAGGTTTCTTCTCACTGGTGTAAAGCTCTCTGCTGATTCTACTCTGTATCCAACTTCATCATCATCATGCTCTACCTTCTCTGATGACATAGTCATCATCAACAGTAGTGATCATGCAAGAGTAGCCCCCAAGTCATCAACAAAGAGACCTAGAACAAGATGCAATGAACAAAAATTGTCATCCTCATCATATAAGGTAGAGGAGAATTGTTCTATCAGTGACAATGGTTCGGTGATTTCGACAAACAACATATCCGAGTACTTGATGGGAGACCAGATCACCGAGTGGCGTGTGGAAGACCTTCTTGATGTCTCATTTGATTTTGATGGTTTCTATGAGGTTGGAAGTGCACCTTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

217

Amino Acids

24.4

Weight (kDa)

6.35

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 3 - 44 2.3e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39070
fragaria_vesca FvH4_2g10070
malus_domestica MD10G1066000.v1.1
prunus_persica Prupe.8G087900_v2.0.a1
pyrus_communis pycom05g04940 pycom10g05150
rosa_chinensis RchiOBHm_Chr6g0267001
rosa_laevigata RLG00000014052
rosa_multiflora Rmu_sc0017071.1_g000007
rosa_rugosa Rorug06G0028400
rosa_samantha Rh6AG149900 Rh6BG150800 Rh6CG146000 Rh6DG134900
rosa_wichuraiana Rw6G012980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 195
AciI CCGC 1 cut(s) 195
AdeI CACNNNGTG 1 cut(s) 573
AfaI GTAC 1 cut(s) 548
AfeI AGCGCT 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 1 cut(s) 252
AluBI AGCT 5 cut(s) 32, 56, 68, 112, 313
AluI AGCT 5 cut(s) 32, 56, 68, 112, 313
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 3 cut(s) 427, 552, 604
Alw44I GTGCAC 1 cut(s) 636
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 36
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 2 cut(s) 132, 195
AsuHPI GGTGA 3 cut(s) 89, 532, 559
BaeGI GKGCMC 1 cut(s) 640
BbsI GAAGAC 2 cut(s) 222, 591
Bbv12I GWGCWC 1 cut(s) 640
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 77
BccI CCATC 2 cut(s) 547, 608
BceAI ACGGC 1 cut(s) 75
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 3 cut(s) 427, 552, 604
BfaI CTAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 133
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 1 cut(s) 66
BlpI GCTNAGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 548
BmsI GCATC 1 cut(s) 437
BpiI GAAGAC 2 cut(s) 222, 591
Bpu10I CCTNAGC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 427, 552
BsaWI WCCGGW 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 457
BseGI GGATG 1 cut(s) 467
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 2 cut(s) 24, 66
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 640
BsiSI CCGG 1 cut(s) 10
BsmAI GTCTC 3 cut(s) 427, 552, 604
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 2 cut(s) 427, 552
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 4 cut(s) 6, 85, 397, 564
Bsp1720I GCTNAGC 1 cut(s) 52
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 25, 65
BspFNI CGCG 1 cut(s) 195
BspTNI GGTCTC 2 cut(s) 427, 552
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 1 cut(s) 307
BssMI GATC 4 cut(s) 6, 85, 397, 564
Bst4CI ACNGT 2 cut(s) 43, 392
Bst6I CTCTTC 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 114, 118
BstDEI CTNAG 3 cut(s) 33, 52, 276
BstF5I GGATG 1 cut(s) 467
BstFNI CGCG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 132, 195
BstKTI GATC 4 cut(s) 9, 88, 400, 567
BstMAI GTCTC 3 cut(s) 427, 552, 604
BstMBI GATC 4 cut(s) 6, 85, 397, 564
BstMWI GCNNNNNNNGC 2 cut(s) 62, 410
BstNSI RCATGY 1 cut(s) 649
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 2 cut(s) 222, 591
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 38
BtgZI GCGATG 2 cut(s) 30, 90
BtsCI GGATG 1 cut(s) 467
BtsIMutI CAGTG 3 cut(s) 39, 300, 511
Cac8I GCNNGC 2 cut(s) 114, 118
CfoI GCGC 2 cut(s) 132, 195
Csp6I GTAC 1 cut(s) 547
CviAII CATG 4 cut(s) 101, 354, 401, 646
CviJI RGCY 7 cut(s) 32, 38, 56, 68, 112, 313, 413
CviKI_1 RGCY 7 cut(s) 32, 38, 56, 68, 112, 313, 413
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 3 cut(s) 33, 52, 276
DpnI GATC 4 cut(s) 8, 87, 399, 566
DpnII GATC 4 cut(s) 6, 85, 397, 564
DraIII CACNNNGTG 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco31I GGTCTC 2 cut(s) 427, 552
Eco32I GATATC 1 cut(s) 178
Eco47III AGCGCT 1 cut(s) 131
EcoRV GATATC 1 cut(s) 178
FaeI CATG 4 cut(s) 104, 357, 404, 649
FaiI YATR 9 cut(s) 102, 355, 377, 402, 478, 480, 539, 624, 647
FalI AAGNNNNNCTT 5 cut(s) 119, 151, 576, 608, 625
FatI CATG 4 cut(s) 100, 353, 400, 645
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 438
GlaI GCGC 2 cut(s) 131, 194
GluI GCNGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 10
HhaI GCGC 2 cut(s) 132, 195
Hin1II CATG 4 cut(s) 104, 357, 404, 649
Hin6I GCGC 2 cut(s) 130, 193
HinP1I GCGC 2 cut(s) 130, 193
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 161, 198, 323
HpaII CCGG 1 cut(s) 10
HphI GGTGA 3 cut(s) 89, 532, 559
Hpy166II GTNNAC 2 cut(s) 97, 638
Hpy188I TCNGA 3 cut(s) 186, 370, 544
Hpy188III TCNNGA 2 cut(s) 212, 593
Hpy8I GTNNAC 2 cut(s) 97, 638
HpyAV CCTTC 2 cut(s) 373, 599
HpyCH4III ACNGT 2 cut(s) 43, 392
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 7 cut(s) 104, 116, 156, 234, 404, 450, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 410
HpyF3I CTNAG 3 cut(s) 33, 52, 276
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 4 cut(s) 104, 357, 404, 649
HspAI GCGC 2 cut(s) 130, 193
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 4 cut(s) 6, 85, 397, 564
LpnPI CCDG 5 cut(s) 23, 220, 274, 288, 575
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 437
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 3 cut(s) 23, 242, 506
MalI GATC 4 cut(s) 8, 87, 399, 566
MboI GATC 4 cut(s) 6, 85, 397, 564
MboII GAAGA 6 cut(s) 16, 131, 196, 227, 287, 596
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 3 cut(s) 225, 461, 493
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 2 cut(s) 362, 610
MnlI CCTC 6 cut(s) 28, 177, 212, 481, 481, 619
MroXI GAANNNNTTC 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 62, 410
NdeII GATC 4 cut(s) 6, 85, 397, 564
NlaIII CATG 4 cut(s) 104, 357, 404, 649
NmuCI GTSAC 3 cut(s) 23, 242, 506
NspI RCATGY 1 cut(s) 649
PciI ACATGT 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 198, 323
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PscI ACATGT 1 cut(s) 645
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 352
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 4 cut(s) 6, 85, 397, 564
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 352
Sse9I AATT 3 cut(s) 225, 461, 493
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 43, 392
TaiI ACGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 527
TasI AATT 3 cut(s) 225, 461, 493
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 2 cut(s) 198, 323
TscAI CASTG 3 cut(s) 46, 307, 511
TseFI GTSAC 3 cut(s) 23, 242, 506
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 3 cut(s) 23, 242, 506
TspDTI ATGAA 5 cut(s) 17, 75, 282, 333, 468
TspRI CASTG 3 cut(s) 46, 307, 511
Tth111I GACNNNGTC 1 cut(s) 377
VneI GTGCAC 1 cut(s) 636
XceI RCATGY 1 cut(s) 649
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 1 cut(s) 438
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.