AT4G39700

Heavy metal-associated isoprenylated plant protein 26-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014574
Physical Location & Seq
Forward (+)
18424109 .. 18425109
1001 bp
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UTR
Exon/CDS
Intron
AT4G39700.1

Sequence Viewer

Length: 477 bp
ATGGGAGTTGGGGGAACGTTGGAGTATATATCAGAGCTAATAGGGAATGGAGGAAGCCATAGTTATGGAAAAAGGAAGAAGAAGAAGCAGTTTCAAACAGTAGAGCTCAAAGTTAGGATGGATTGTGATGGTTGTGTCCTCAAAATCAAAAACTCTCTTTCTTCTCTAAAAGGAGTGAAAACGGTGGAGATAAACAAGAAGCAACAGAAGGTGACAGTGAGTGGTTATGCGGATGCGAGCAAGGTGCTGAAGAAGGCTAAAGCGACGGGGAAGAAAGCCGAGATATGGCCGTACGTACCGTACAACTTGGTGGCTCAGCCGTACATAGCTCAGGCTTATGATAAGAAAGCACCGCCTGGTTACGTCAGAAAAGTTGACCCAAACGTCACCACCGGGACGATGGCTGTTTACTACGATGACCCTTCTTATACTTCTTTGTTTAGTGATGATAATCCTAATGCTTGCTCTATTATGTAG

Protein Analysis

158

Amino Acids

17.35

Weight (kDa)

9.49

Isoelectric Point (pI)

22.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 37 - 92 6.8e-13 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014574)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39700
fragaria_vesca FvH4_1g21640
malus_domestica MD01G1024200.v1.1 MD15G1328000.v1.1
prunus_persica Prupe.6G179300_v2.0.a1
pyrus_communis pycom01g05190 pycom15g29660
rosa_chinensis RchiOBHm_Chr2g0115511
rosa_laevigata RLG00000018189
rosa_multiflora Rmu_sc0008334.1_g000016
rosa_roxburghii Rroxscaffold_2G00129020
rosa_rugosa Rorug02G0197200
rosa_samantha Rh2AG254800 Rh2BG265500 Rh2CG260000 Rh2DG262900
rosa_wichuraiana Rw2G019940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 383
AciI CCGC 2 cut(s) 230, 353
AclI AACGTT 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 4 cut(s) 293, 297, 302, 323
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 3 cut(s) 37, 106, 329
AluI AGCT 3 cut(s) 37, 106, 329
Alw21I GWGCWC 1 cut(s) 108
AoxI GGCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 223, 379
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 3 cut(s) 112, 122, 394
BceAI ACGGC 2 cut(s) 274, 304
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 357
BcnI CCSGG 1 cut(s) 394
BlpI GCTNAGC 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 357, 394
BmrFI CCNGG 2 cut(s) 357, 394
BmsI GCATC 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 394
BsaAI YACGTR 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 450
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 123, 238
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 329, 344
BshFI GGCC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 393
BsiWI CGTACG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 108
Bsp1720I GCTNAGC 1 cut(s) 315
BspACI CCGC 2 cut(s) 230, 353
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 328, 343
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 4 cut(s) 100, 184, 217, 300
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 238, 463
BstDEI CTNAG 2 cut(s) 315, 330
BstF5I GGATG 2 cut(s) 123, 238
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 2 cut(s) 355, 392
BstSNI TACGTA 1 cut(s) 295
BstXI CCANNNNNNTGG 1 cut(s) 65
BsuRI GGCC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 123, 238
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 238, 463
Csp6I GTAC 4 cut(s) 292, 296, 301, 322
CviQI GTAC 4 cut(s) 292, 296, 301, 322
DdeI CTNAG 2 cut(s) 315, 330
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 106
Eco105I TACGTA 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 108
FaqI GGGAC 1 cut(s) 409
FokI GGATG 2 cut(s) 130, 245
FriOI GRGCYC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 289
HapII CCGG 1 cut(s) 393
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HpaII CCGG 1 cut(s) 393
HphI GGTGA 2 cut(s) 223, 379
Hpy166II GTNNAC 2 cut(s) 376, 409
Hpy188I TCNGA 2 cut(s) 34, 368
Hpy8I GTNNAC 2 cut(s) 376, 409
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 3 cut(s) 202, 247, 432
HpyCH4III ACNGT 4 cut(s) 100, 184, 217, 300
HpyCH4IV ACGT 4 cut(s) 17, 294, 363, 384
HpyF3I CTNAG 2 cut(s) 315, 330
HpySE526I ACGT 4 cut(s) 17, 294, 363, 384
LpnPI CCDG 4 cut(s) 317, 342, 369, 406
LweI GCATC 1 cut(s) 223
MaeII ACGT 4 cut(s) 17, 294, 363, 384
MaeIII GTNAC 3 cut(s) 211, 359, 385
MboII GAAGA 6 cut(s) 88, 91, 94, 153, 262, 283
MhlI GDGCHC 1 cut(s) 108
MnlI CCTC 2 cut(s) 44, 149
MslI CAYNNNNRTG 1 cut(s) 63
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 357, 394
MvaI CCWGG 1 cut(s) 357
NciI CCSGG 1 cut(s) 394
NmeAIII GCCGAG 1 cut(s) 304
NmuCI GTSAC 2 cut(s) 211, 385
Pfl23II CGTACG 1 cut(s) 291
Ppu21I YACGTR 1 cut(s) 295
Psp124BI GAGCTC 1 cut(s) 108
Psp1406I AACGTT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspLI CGTACG 1 cut(s) 291
RsaI GTAC 4 cut(s) 293, 297, 302, 323
RsaNI GTAC 4 cut(s) 292, 296, 301, 322
RseI CAYNNNNRTG 1 cut(s) 63
SacI GAGCTC 1 cut(s) 108
ScrFI CCNGG 2 cut(s) 357, 394
SduI GDGCHC 1 cut(s) 108
SetI ASST 9 cut(s) 20, 39, 108, 213, 246, 297, 331, 366, 387
SfaNI GCATC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 63
SnaBI TACGTA 1 cut(s) 295
SsiI CCGC 2 cut(s) 230, 353
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 355, 392
TaaI ACNGT 4 cut(s) 100, 184, 217, 300
TaiI ACGT 4 cut(s) 20, 297, 366, 387
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 2 cut(s) 211, 385
Tsp45I GTSAC 2 cut(s) 211, 385
TspRI CASTG 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.