Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014574

Physical Location & Seq

Genomic Coordinates Forward (+)

4810740 .. 4811476

Gene Structure 737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGAGTTGGAGAAACATTGGAGTACTTGTCTGATCTGGTGAACAACAGTGGGTATAAACACAAAAAGAAGAAGCAATTACAGACAGTGGAGCTCAAAGTCAGGATGGACTGTGATGGCTGTGAGCTTAAGGTCAAGAATGCCCTCTCTTCCTTAACTGGGGTTAAATCTGTGGAGATAAACAGGAAGCAACAGAAGGTGACTGTGACAGGGTATGTTGAACCAAACAAAGTGCTGAAGAAGGCAAAGTCAACAGGGAAGAGGGCGGAGATATGGCCTTATGTGCCCTACAACTTAGTGGCACAGCCCTACATTGCTCAGGCTTATGACAAGAAGGCACCTCCTGGTTATGTCAGAAATGTGGACAACAATCCCTCCTCCACTGGGACTGTCACAAAATATGAAGACCCTTACACCACCATGTTCAGTGATGATAACCCTAATGCCTGCTCCATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

154

Amino Acids

17.1

Weight (kDa)

9.22

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39700
fragaria_vesca	FvH4_1g21640
malus_domestica	MD01G1024200.v1.1 MD15G1328000.v1.1
prunus_persica	Prupe.6G179300_v2.0.a1
pyrus_communis	pycom01g05190 pycom15g29660
rosa_chinensis	RchiOBHm_Chr2g0115511
rosa_laevigata	RLG00000018189
rosa_multiflora	Rmu_sc0008334.1_g000016
rosa_roxburghii	Rroxscaffold_2G00129020
rosa_rugosa	Rorug02G0197200
rosa_samantha	Rh2AG254800 Rh2BG265500 Rh2CG260000 Rh2DG262900
rosa_wichuraiana	Rw2G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	159, 384
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	94, 127
AluI	AGCT	2 cut(s)	94, 127
Alw21I	GWGCWC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	52, 211
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	3 cut(s)	100, 110, 461
BciT130I	CCWGG	1 cut(s)	345
BfrI	CTTAAG	1 cut(s)	128
BmcAI	AGTACT	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	2 cut(s)	168, 393
BmuI	ACTGGG	2 cut(s)	168, 393
BpiI	GAAGAC	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	318
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 384
Bse1I	ACTGG	2 cut(s)	163, 388
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	159, 384
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	163, 388
BseRI	GAGGAG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	288
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	159, 384
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	96, 288
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	163, 388
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	5 cut(s)	50, 88, 113, 205, 391
Bst6I	CTCTTC	2 cut(s)	154, 254
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	295, 318
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	4 cut(s)	55, 93, 381, 433
Cac8I	GCNNGC	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	421, 457
CviJI	RGCY	6 cut(s)	94, 120, 127, 277, 307, 323
CviKI_1	RGCY	6 cut(s)	94, 120, 127, 277, 307, 323
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	295, 318
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	154, 254
EarI	CTCTTC	2 cut(s)	154, 254
EciI	GGCGGA	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	2 cut(s)	424, 460
FaiI	YATR	9 cut(s)	57, 216, 274, 282, 327, 351, 402, 422, 458
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	2 cut(s)	420, 456
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	424, 460
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HphI	GGTGA	2 cut(s)	52, 211
Hpy166II	GTNNAC	3 cut(s)	43, 252, 364
Hpy188I	TCNGA	2 cut(s)	34, 356
Hpy188III	TCNNGA	2 cut(s)	103, 136
Hpy8I	GTNNAC	3 cut(s)	43, 252, 364
HpyAV	CCTTC	3 cut(s)	190, 235, 328
HpyCH4III	ACNGT	5 cut(s)	50, 88, 113, 205, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	295, 318
Hsp92II	CATG	2 cut(s)	424, 460
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	91, 455
MaeIII	GTNAC	3 cut(s)	199, 205, 391
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	5 cut(s)	82, 141, 250, 271, 416
MhlI	GDGCHC	2 cut(s)	96, 288
MluCI	AATT	1 cut(s)	77
MnlI	CCTC	5 cut(s)	155, 255, 351, 385, 388
MseI	TTAA	3 cut(s)	129, 155, 165
MslI	CAYNNNNRTG	1 cut(s)	419
MspCI	CTTAAG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	424, 460
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	3 cut(s)	199, 205, 391
PctI	GAATGC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	339
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	129, 155, 165
Sau3AI	GATC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	2 cut(s)	96, 288
SetI	ASST	5 cut(s)	96, 129, 135, 201, 343
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	343
TaaI	ACNGT	5 cut(s)	50, 88, 113, 205, 391
TasI	AATT	1 cut(s)	77
TatI	WGTACW	1 cut(s)	24
Tru1I	TTAA	3 cut(s)	129, 155, 165
Tru9I	TTAA	3 cut(s)	129, 155, 165
TscAI	CASTG	4 cut(s)	55, 93, 388, 433
TseFI	GTSAC	3 cut(s)	199, 205, 391
Tsp45I	GTSAC	3 cut(s)	199, 205, 391
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	4 cut(s)	55, 93, 388, 433
Vha464I	CTTAAG	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.