E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G01160 AT5G01160 |
| fragaria_vesca | FvH4_6g12190 FvH4_6g12190 |
| malus_domestica | MD04G1145200.v1.1 MD12G1159000.v1.1 |
| prunus_persica | Prupe.6G269500_v2.0.a1 |
| pyrus_communis | pycom04g13140 pycom12g15090 |
| rosa_chinensis | RchiOBHm_Chr3g0463991 |
| rosa_laevigata | RLG00000024729 |
| rosa_multiflora | Rmu_sc0006492.1_g000009 |
| rosa_roxburghii | Rroxscaffold_6G00416080 |
| rosa_rugosa | Rorug03G0069900 |
| rosa_samantha | Rh3AG126800 Rh3BG130700 Rh3CG133300 Rh3DG132200 |
| rosa_wichuraiana | Rw3G010710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 101 |
| Acc36I | ACCTGC | 1 cut(s) | 1000 |
| AccB1I | GGYRCC | 1 cut(s) | 988 |
| AccBSI | CCGCTC | 2 cut(s) | 325, 882 |
| AciI | CCGC | 7 cut(s) | 325, 681, 743, 882, 885, 920, 992 |
| AclWI | GGATC | 5 cut(s) | 371, 549, 835, 895, 961 |
| AcoI | YGGCCR | 1 cut(s) | 1046 |
| AcsI | RAATTY | 2 cut(s) | 9, 943 |
| AcuI | CTGAAG | 3 cut(s) | 425, 504, 510 |
| AcyI | GRCGYC | 1 cut(s) | 593 |
| AfaI | GTAC | 1 cut(s) | 860 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 695 |
| AgsI | TTSAA | 4 cut(s) | 8, 284, 341, 422 |
| AjnI | CCWGG | 2 cut(s) | 667, 694 |
| AluBI | AGCT | 6 cut(s) | 193, 380, 524, 545, 562, 750 |
| AluI | AGCT | 6 cut(s) | 193, 380, 524, 545, 562, 750 |
| Alw21I | GWGCWC | 4 cut(s) | 292, 506, 547, 856 |
| Alw26I | GTCTC | 2 cut(s) | 65, 1020 |
| AlwI | GGATC | 5 cut(s) | 371, 549, 835, 895, 961 |
| Ama87I | CYCGRG | 2 cut(s) | 775, 908 |
| AoxI | GGCC | 2 cut(s) | 56, 1046 |
| ApeKI | GCWGC | 3 cut(s) | 377, 511, 562 |
| ApoI | RAATTY | 2 cut(s) | 9, 943 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 596, 628 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 136 |
| AsuC2I | CCSGG | 4 cut(s) | 776, 777, 981, 1019 |
| AsuHPI | GGTGA | 1 cut(s) | 918 |
| AsuII | TTCGAA | 1 cut(s) | 675 |
| AvaI | CYCGRG | 2 cut(s) | 775, 908 |
| BalI | TGGCCA | 1 cut(s) | 1048 |
| BanI | GGYRCC | 1 cut(s) | 988 |
| BanII | GRGCYC | 1 cut(s) | 547 |
| BbsI | GAAGAC | 2 cut(s) | 8, 510 |
| Bbv12I | GWGCWC | 4 cut(s) | 292, 506, 547, 856 |
| BbvI | GCAGC | 3 cut(s) | 389, 523, 549 |
| BccI | CCATC | 6 cut(s) | 105, 311, 349, 473, 976, 1058 |
| BceAI | ACGGC | 1 cut(s) | 171 |
| BciT130I | CCWGG | 2 cut(s) | 669, 696 |
| BciVI | GTATCC | 3 cut(s) | 819, 924, 969 |
| BclI | TGATCA | 1 cut(s) | 265 |
| BcnI | CCSGG | 4 cut(s) | 776, 777, 981, 1019 |
| BcoDI | GTCTC | 2 cut(s) | 65, 1020 |
| BfaI | CTAG | 2 cut(s) | 194, 684 |
| BfmI | CTRYAG | 1 cut(s) | 81 |
| BfuAI | ACCTGC | 1 cut(s) | 1000 |
| BfuI | GTATCC | 3 cut(s) | 819, 924, 969 |
| BisI | GCNGC | 4 cut(s) | 378, 512, 563, 883 |
| BlsI | GCNGC | 4 cut(s) | 379, 513, 564, 884 |
| Bme1390I | CCNGG | 6 cut(s) | 669, 696, 776, 777, 981, 1019 |
| BmeT110I | CYCGRG | 2 cut(s) | 775, 908 |
| BmiI | GGNNCC | 3 cut(s) | 139, 707, 990 |
| BmrFI | CCNGG | 6 cut(s) | 669, 696, 776, 777, 981, 1019 |
| BmsI | GCATC | 1 cut(s) | 454 |
| BpiI | GAAGAC | 2 cut(s) | 8, 510 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 46, 78 |
| BpmI | CTGGAG | 1 cut(s) | 627 |
| Bpu14I | TTCGAA | 1 cut(s) | 675 |
| BpuMI | CCSGG | 4 cut(s) | 776, 777, 981, 1019 |
| BsaBI | GATNNNNATC | 2 cut(s) | 239, 368 |
| BsaHI | GRCGYC | 1 cut(s) | 593 |
| BsaJI | CCNNGG | 4 cut(s) | 442, 775, 949, 1018 |
| BsaWI | WCCGGW | 1 cut(s) | 702 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 695 |
| Bse1I | ACTGG | 2 cut(s) | 46, 487 |
| Bse3DI | GCAATG | 1 cut(s) | 902 |
| Bse8I | GATNNNNATC | 2 cut(s) | 239, 368 |
| BseBI | CCWGG | 2 cut(s) | 669, 696 |
| BseDI | CCNNGG | 4 cut(s) | 442, 775, 949, 1018 |
| BseJI | GATNNNNATC | 2 cut(s) | 239, 368 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 695 |
| BseMI | GCAATG | 1 cut(s) | 902 |
| BseMII | CTCAG | 1 cut(s) | 869 |
| BseNI | ACTGG | 2 cut(s) | 46, 487 |
| BseRI | GAGGAG | 2 cut(s) | 372, 954 |
| BseXI | GCAGC | 3 cut(s) | 389, 523, 549 |
| BseYI | CCCAGC | 4 cut(s) | 558, 720, 746, 1005 |
| BsgI | GTGCAG | 1 cut(s) | 396 |
| Bsh1285I | CGRYCG | 1 cut(s) | 175 |
| BshFI | GGCC | 2 cut(s) | 58, 1048 |
| BshNI | GGYRCC | 1 cut(s) | 988 |
| BsiEI | CGRYCG | 1 cut(s) | 175 |
| BsiHKAI | GWGCWC | 4 cut(s) | 292, 506, 547, 856 |
| BsiHKCI | CYCGRG | 2 cut(s) | 775, 908 |
| BsiSI | CCGG | 4 cut(s) | 703, 776, 981, 1018 |
| BslFI | GGGAC | 1 cut(s) | 75 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 695 |
| BsmAI | GTCTC | 2 cut(s) | 65, 1020 |
| BsmBI | CGTCTC | 2 cut(s) | 65, 1020 |
| BsmFI | GGGAC | 1 cut(s) | 75 |
| BsnI | GGCC | 2 cut(s) | 58, 1048 |
| BsoBI | CYCGRG | 2 cut(s) | 775, 908 |
| Bsp119I | TTCGAA | 1 cut(s) | 675 |
| Bsp1286I | GDGCHC | 4 cut(s) | 292, 506, 547, 856 |
| Bsp143I | GATC | 7 cut(s) | 112, 265, 363, 554, 827, 887, 953 |
| Bsp19I | CCATGG | 1 cut(s) | 442 |
| BspACI | CCGC | 7 cut(s) | 325, 681, 743, 882, 885, 920, 992 |
| BspANI | GGCC | 2 cut(s) | 58, 1048 |
| BspCNI | CTCAG | 1 cut(s) | 868 |
| BspLI | GGNNCC | 3 cut(s) | 139, 707, 990 |
| BspMI | ACCTGC | 1 cut(s) | 1000 |
| BspPI | GGATC | 5 cut(s) | 371, 549, 835, 895, 961 |
| BspT104I | TTCGAA | 1 cut(s) | 675 |
| BspT107I | GGYRCC | 1 cut(s) | 988 |
| BsrBI | CCGCTC | 2 cut(s) | 325, 882 |
| BsrDI | GCAATG | 1 cut(s) | 902 |
| BsrI | ACTGG | 2 cut(s) | 46, 487 |
| BssECI | CCNNGG | 4 cut(s) | 442, 775, 949, 1018 |
| BssMI | GATC | 7 cut(s) | 112, 265, 363, 554, 827, 887, 953 |
| BssNI | GRCGYC | 1 cut(s) | 593 |
| BssT1I | CCWWGG | 2 cut(s) | 442, 949 |
| Bst2UI | CCWGG | 2 cut(s) | 669, 696 |
| Bst4CI | ACNGT | 7 cut(s) | 76, 82, 157, 612, 851, 1031, 1061 |
| BstACI | GRCGYC | 1 cut(s) | 593 |
| BstBI | TTCGAA | 1 cut(s) | 675 |
| BstC8I | GCNNGC | 3 cut(s) | 292, 543, 752 |
| BstDEI | CTNAG | 2 cut(s) | 392, 855 |
| BstDSI | CCRYGG | 1 cut(s) | 442 |
| BstEII | GGTNACC | 1 cut(s) | 482 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 693 |
| BstKTI | GATC | 7 cut(s) | 115, 268, 366, 557, 830, 890, 956 |
| BstMAI | GTCTC | 2 cut(s) | 65, 1020 |
| BstMBI | GATC | 7 cut(s) | 112, 265, 363, 554, 827, 887, 953 |
| BstMCI | CGRYCG | 1 cut(s) | 175 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 222, 599, 751 |
| BstNI | CCWGG | 2 cut(s) | 669, 696 |
| BstPI | GGTNACC | 1 cut(s) | 482 |
| BstSCI | CCNGG | 6 cut(s) | 667, 694, 774, 775, 979, 1017 |
| BstSFI | CTRYAG | 1 cut(s) | 81 |
| BstV1I | GCAGC | 3 cut(s) | 389, 523, 549 |
| BstV2I | GAAGAC | 2 cut(s) | 8, 510 |
| BstX2I | RGATCY | 2 cut(s) | 363, 554 |
| BstYI | RGATCY | 2 cut(s) | 363, 554 |
| BsuI | GTATCC | 3 cut(s) | 819, 924, 969 |
| BsuRI | GGCC | 2 cut(s) | 58, 1048 |
| BtgI | CCRYGG | 1 cut(s) | 442 |
| BtsI | GCAGTG | 1 cut(s) | 301 |
| BtsIMutI | CAGTG | 1 cut(s) | 301 |
| BveI | ACCTGC | 1 cut(s) | 1000 |
| Cac8I | GCNNGC | 3 cut(s) | 292, 543, 752 |
| Cfr9I | CCCGGG | 1 cut(s) | 775 |
| CseI | GACGC | 1 cut(s) | 582 |
| Csp6I | GTAC | 1 cut(s) | 859 |
| CviAII | CATG | 5 cut(s) | 269, 428, 434, 443, 972 |
| CviQI | GTAC | 1 cut(s) | 859 |
| DdeI | CTNAG | 2 cut(s) | 392, 855 |
| DpnI | GATC | 7 cut(s) | 114, 267, 365, 556, 829, 889, 955 |
| DpnII | GATC | 7 cut(s) | 112, 265, 363, 554, 827, 887, 953 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 101 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 101 |
| EaeI | YGGCCR | 1 cut(s) | 1046 |
| EciI | GGCGGA | 1 cut(s) | 900 |
| Ecl136II | GAGCTC | 1 cut(s) | 545 |
| Eco130I | CCWWGG | 2 cut(s) | 442, 949 |
| Eco147I | AGGCCT | 1 cut(s) | 58 |
| Eco24I | GRGCYC | 1 cut(s) | 547 |
| Eco53kI | GAGCTC | 1 cut(s) | 545 |
| Eco57I | CTGAAG | 3 cut(s) | 425, 504, 510 |
| Eco88I | CYCGRG | 2 cut(s) | 775, 908 |
| Eco91I | GGTNACC | 1 cut(s) | 482 |
| EcoICRI | GAGCTC | 1 cut(s) | 545 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 693 |
| EcoO65I | GGTNACC | 1 cut(s) | 482 |
| EcoRII | CCWGG | 2 cut(s) | 667, 694 |
| EcoT14I | CCWWGG | 2 cut(s) | 442, 949 |
| EcoT38I | GRGCYC | 1 cut(s) | 547 |
| ErhI | CCWWGG | 2 cut(s) | 442, 949 |
| Esp3I | CGTCTC | 2 cut(s) | 65, 1020 |
| FaeI | CATG | 5 cut(s) | 272, 431, 437, 446, 975 |
| FaiI | YATR | 9 cut(s) | 246, 270, 316, 429, 435, 444, 728, 737, 973 |
| FaqI | GGGAC | 1 cut(s) | 75 |
| FatI | CATG | 5 cut(s) | 268, 427, 433, 442, 971 |
| FauI | CCCGC | 1 cut(s) | 927 |
| FbaI | TGATCA | 1 cut(s) | 265 |
| Fnu4HI | GCNGC | 4 cut(s) | 378, 512, 563, 883 |
| FriOI | GRGCYC | 1 cut(s) | 547 |
| Fsp4HI | GCNGC | 4 cut(s) | 378, 512, 563, 883 |
| FspBI | CTAG | 2 cut(s) | 194, 684 |
| GluI | GCNGC | 4 cut(s) | 378, 512, 563, 883 |
| GsaI | CCCAGC | 4 cut(s) | 562, 724, 750, 1009 |
| GsuI | CTGGAG | 1 cut(s) | 627 |
| HaeIII | GGCC | 2 cut(s) | 58, 1048 |
| HapII | CCGG | 4 cut(s) | 703, 776, 981, 1018 |
| HgaI | GACGC | 1 cut(s) | 582 |
| Hin1I | GRCGYC | 1 cut(s) | 593 |
| Hin1II | CATG | 5 cut(s) | 272, 431, 437, 446, 975 |
| HincII | GTYRAC | 1 cut(s) | 1015 |
| HindII | GTYRAC | 1 cut(s) | 1015 |
| HpaI | GTTAAC | 1 cut(s) | 1015 |
| HpaII | CCGG | 4 cut(s) | 703, 776, 981, 1018 |
| HphI | GGTGA | 1 cut(s) | 918 |
| Hpy166II | GTNNAC | 4 cut(s) | 208, 578, 782, 1015 |
| Hpy188III | TCNNGA | 6 cut(s) | 92, 349, 403, 615, 631, 644 |
| Hpy8I | GTNNAC | 4 cut(s) | 208, 578, 782, 1015 |
| Hpy99I | CGWCG | 4 cut(s) | 37, 70, 173, 180 |
| HpyAV | CCTTC | 4 cut(s) | 69, 353, 813, 933 |
| HpyCH4III | ACNGT | 7 cut(s) | 76, 82, 157, 612, 851, 1031, 1061 |
| HpyCH4V | TGCA | 7 cut(s) | 239, 377, 467, 511, 565, 602, 739 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 222, 599, 751 |
| HpyF3I | CTNAG | 2 cut(s) | 392, 855 |
| Hsp92I | GRCGYC | 1 cut(s) | 593 |
| Hsp92II | CATG | 5 cut(s) | 272, 431, 437, 446, 975 |
| Ksp22I | TGATCA | 1 cut(s) | 265 |
| KspAI | GTTAAC | 1 cut(s) | 1015 |
| Kzo9I | GATC | 7 cut(s) | 112, 265, 363, 554, 827, 887, 953 |
| LmnI | GCTCC | 2 cut(s) | 385, 550 |
| Lsp1109I | GCAGC | 3 cut(s) | 389, 523, 549 |
| LweI | GCATC | 1 cut(s) | 454 |
| MaeI | CTAG | 2 cut(s) | 194, 684 |
| MaeIII | GTNAC | 4 cut(s) | 76, 142, 482, 606 |
| MalI | GATC | 7 cut(s) | 114, 267, 365, 556, 829, 889, 955 |
| MbiI | CCGCTC | 2 cut(s) | 325, 882 |
| MboI | GATC | 7 cut(s) | 112, 265, 363, 554, 827, 887, 953 |
| MboII | GAAGA | 7 cut(s) | 8, 107, 346, 358, 418, 488, 510 |
| MflI | RGATCY | 2 cut(s) | 363, 554 |
| MhlI | GDGCHC | 4 cut(s) | 292, 506, 547, 856 |
| MlsI | TGGCCA | 1 cut(s) | 1048 |
| MluCI | AATT | 4 cut(s) | 9, 634, 839, 943 |
| MluNI | TGGCCA | 1 cut(s) | 1048 |
| MlyI | GAGTC | 1 cut(s) | 139 |
| MmeI | TCCRAC | 2 cut(s) | 89, 836 |
| Mox20I | TGGCCA | 1 cut(s) | 1048 |
| MroXI | GAANNNNTTC | 1 cut(s) | 136 |
| MscI | TGGCCA | 1 cut(s) | 1048 |
| MseI | TTAA | 3 cut(s) | 551, 846, 1014 |
| MslI | CAYNNNNRTG | 1 cut(s) | 432 |
| Msp20I | TGGCCA | 1 cut(s) | 1048 |
| MspA1I | CMGCKG | 1 cut(s) | 562 |
| MspI | CCGG | 4 cut(s) | 703, 776, 981, 1018 |
| MspR9I | CCNGG | 6 cut(s) | 669, 696, 776, 777, 981, 1019 |
| MvaI | CCWGG | 2 cut(s) | 669, 696 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 222, 599, 751 |
| NciI | CCSGG | 4 cut(s) | 776, 777, 981, 1019 |
| NcoI | CCATGG | 1 cut(s) | 442 |
| NdeII | GATC | 7 cut(s) | 112, 265, 363, 554, 827, 887, 953 |
| NlaIII | CATG | 5 cut(s) | 272, 431, 437, 446, 975 |
| NlaIV | GGNNCC | 3 cut(s) | 139, 707, 990 |
| NmuCI | GTSAC | 2 cut(s) | 142, 606 |
| NspV | TTCGAA | 1 cut(s) | 675 |
| PceI | AGGCCT | 1 cut(s) | 58 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 108, 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 136 |
| PfoI | TCCNGGA | 2 cut(s) | 667, 979 |
| PkrI | GCNGC | 4 cut(s) | 379, 513, 564, 884 |
| PleI | GAGTC | 1 cut(s) | 139 |
| PpsI | GAGTC | 1 cut(s) | 139 |
| Psp124BI | GAGCTC | 1 cut(s) | 547 |
| Psp6I | CCWGG | 2 cut(s) | 667, 694 |
| PspEI | GGTNACC | 1 cut(s) | 482 |
| PspFI | CCCAGC | 4 cut(s) | 558, 720, 746, 1005 |
| PspGI | CCWGG | 2 cut(s) | 667, 694 |
| PspN4I | GGNNCC | 3 cut(s) | 139, 707, 990 |
| PsuI | RGATCY | 2 cut(s) | 363, 554 |
| PvuII | CAGCTG | 1 cut(s) | 562 |
| RsaI | GTAC | 1 cut(s) | 860 |
| RsaNI | GTAC | 1 cut(s) | 859 |
| RseI | CAYNNNNRTG | 1 cut(s) | 432 |
| SacI | GAGCTC | 1 cut(s) | 547 |
| SaqAI | TTAA | 3 cut(s) | 551, 846, 1014 |
| SatI | GCNGC | 4 cut(s) | 378, 512, 563, 883 |
| Sau3AI | GATC | 7 cut(s) | 112, 265, 363, 554, 827, 887, 953 |
| SchI | GAGTC | 1 cut(s) | 139 |
| ScrFI | CCNGG | 6 cut(s) | 669, 696, 776, 777, 981, 1019 |
| SduI | GDGCHC | 4 cut(s) | 292, 506, 547, 856 |
| SfaNI | GCATC | 1 cut(s) | 454 |
| SfcI | CTRYAG | 1 cut(s) | 81 |
| SfuI | TTCGAA | 1 cut(s) | 675 |
| SmaI | CCCGGG | 1 cut(s) | 777 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 432 |
| Sse9I | AATT | 4 cut(s) | 9, 634, 839, 943 |
| SseBI | AGGCCT | 1 cut(s) | 58 |
| SsiI | CCGC | 7 cut(s) | 325, 681, 743, 882, 885, 920, 992 |
| SspMI | CTAG | 2 cut(s) | 194, 684 |
| SstI | GAGCTC | 1 cut(s) | 547 |
| StuI | AGGCCT | 1 cut(s) | 58 |
| StyD4I | CCNGG | 6 cut(s) | 667, 694, 774, 775, 979, 1017 |
| StyI | CCWWGG | 2 cut(s) | 442, 949 |
| TaaI | ACNGT | 7 cut(s) | 76, 82, 157, 612, 851, 1031, 1061 |
| TaqI | TCGA | 1 cut(s) | 675 |
| TaqII | GACCGA | 1 cut(s) | 161 |
| TasI | AATT | 4 cut(s) | 9, 634, 839, 943 |
| TauI | GCSGC | 1 cut(s) | 885 |
| Tru1I | TTAA | 3 cut(s) | 551, 846, 1014 |
| Tru9I | TTAA | 3 cut(s) | 551, 846, 1014 |
| TscAI | CASTG | 1 cut(s) | 301 |
| TseFI | GTSAC | 2 cut(s) | 142, 606 |
| TseI | GCWGC | 3 cut(s) | 377, 511, 562 |
| Tsp45I | GTSAC | 2 cut(s) | 142, 606 |
| TspDTI | ATGAA | 4 cut(s) | 358, 743, 779, 891 |
| TspGWI | ACGGA | 3 cut(s) | 50, 83, 130 |
| TspMI | CCCGGG | 1 cut(s) | 775 |
| TspRI | CASTG | 1 cut(s) | 301 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 693 |
| XapI | RAATTY | 2 cut(s) | 9, 943 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 440 |
| XmaI | CCCGGG | 1 cut(s) | 775 |
| XmnI | GAANNNNTTC | 1 cut(s) | 136 |
| XspI | CTAG | 2 cut(s) | 194, 684 |