AT5G01160

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
53856 .. 56052
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01160.1

Sequence Viewer

Length: 1083 bp
ATGCTTCAAATTCGTCTTCGGAGGGATTCCCCGACGGAAACTGGAAATGGTGCGAGGCCTTCTCCGACGGAGACGGTTACTGTAGCCTGTCCCGACCATCTCGTCCTCGCCGATCTTCCTGTTGCGAAAGGAATCGGTTCCGTGACTCCCACCACCGTAATCAAGCCCGTCGGTCGTCGTTCTCGCCGTCAGCTAGGCGAGAGAGTTCACTTCTGCGTTCGTTGCGATTTTCCGATTGCAATCTATGGTCGTCTGATTCCTTGTGATCATGCCTTTTGCCTTGAATGTGCTCGCAGTGATTCCATCTGCTATCTATGTGATGAGCGGATTCAGAAGATTCAAACAATCAAGATGATGGAAGGGATCTTCATCTGTGCAGCTCCTCATTGTCTTAGGTCTTTCCTGAAGAAACTTGACTTTGAAGCCCATGTCCATGACCTCCATGGAAGCCTATTACAAGCCGATGCAGAGAAAGAAGATGGTAACCAGTCAGATGTTCAGAGCACAATGCAGCAGTCTTCAGCTTCAGAATCCACCTTGCGAGCTCCTTTAAGATCCCAGCTGCAACAATCCCGTGAACTAAACAGGTCGGCGTCATTTGCAAAGTCACAGTCTGGATTTAGTCAAGTCCAGAATTACCCTCCAGATAGCGATAACTCTCGCCCTCCTGGATTCGAAACCGCTAGTCCTAAACCAGGAATCCGGTTCCCAGACTACCCCCAGCCTATGAATCTTATGCAACCGCCCAGCTTGCCCGTTCCAATGAATCAAAACCCGGGTTTACCACAGCAGTTTGGTTTTCCTTCGTATCCAACAACAGAGAGTGGATCATCTCAACAATTCTTTAACGGTGCTCAGTACGAGATGACAAGAACAGAGAGCGGCGGATCAGAACAAAGTTCATTGCTCGGGTATCCCCCGCCTTCACCAATGACGAATCTGAATTTCCAAGGATCGTATCCTCCTCCATCATGGAATCCCGGAATGGCACCGCCTCACACGACCCAGCAGGTTAACCGGGGTAGAGACGGTCAAAGTTTTGGGTGGCCACAAGAGAACCGTGATGGCTTTGGGCAGGAGTAA

Protein Analysis

360

Amino Acids

39.77

Weight (kDa)

6.46

Isoelectric Point (pI)

70.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012517)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 1000
AccB1I GGYRCC 1 cut(s) 988
AccBSI CCGCTC 2 cut(s) 325, 882
AciI CCGC 7 cut(s) 325, 681, 743, 882, 885, 920, 992
AclWI GGATC 5 cut(s) 371, 549, 835, 895, 961
AcoI YGGCCR 1 cut(s) 1046
AcsI RAATTY 2 cut(s) 9, 943
AcuI CTGAAG 3 cut(s) 425, 504, 510
AcyI GRCGYC 1 cut(s) 593
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 1 cut(s) 695
AgsI TTSAA 4 cut(s) 8, 284, 341, 422
AjnI CCWGG 2 cut(s) 667, 694
AluBI AGCT 6 cut(s) 193, 380, 524, 545, 562, 750
AluI AGCT 6 cut(s) 193, 380, 524, 545, 562, 750
Alw21I GWGCWC 4 cut(s) 292, 506, 547, 856
Alw26I GTCTC 2 cut(s) 65, 1020
AlwI GGATC 5 cut(s) 371, 549, 835, 895, 961
Ama87I CYCGRG 2 cut(s) 775, 908
AoxI GGCC 2 cut(s) 56, 1046
ApeKI GCWGC 3 cut(s) 377, 511, 562
ApoI RAATTY 2 cut(s) 9, 943
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
Asp700I GAANNNNTTC 1 cut(s) 136
AsuC2I CCSGG 4 cut(s) 776, 777, 981, 1019
AsuHPI GGTGA 1 cut(s) 918
AsuII TTCGAA 1 cut(s) 675
AvaI CYCGRG 2 cut(s) 775, 908
BalI TGGCCA 1 cut(s) 1048
BanI GGYRCC 1 cut(s) 988
BanII GRGCYC 1 cut(s) 547
BbsI GAAGAC 2 cut(s) 8, 510
Bbv12I GWGCWC 4 cut(s) 292, 506, 547, 856
BbvI GCAGC 3 cut(s) 389, 523, 549
BccI CCATC 6 cut(s) 105, 311, 349, 473, 976, 1058
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 2 cut(s) 669, 696
BciVI GTATCC 3 cut(s) 819, 924, 969
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 4 cut(s) 776, 777, 981, 1019
BcoDI GTCTC 2 cut(s) 65, 1020
BfaI CTAG 2 cut(s) 194, 684
BfmI CTRYAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 1000
BfuI GTATCC 3 cut(s) 819, 924, 969
BisI GCNGC 4 cut(s) 378, 512, 563, 883
BlsI GCNGC 4 cut(s) 379, 513, 564, 884
Bme1390I CCNGG 6 cut(s) 669, 696, 776, 777, 981, 1019
BmeT110I CYCGRG 2 cut(s) 775, 908
BmiI GGNNCC 3 cut(s) 139, 707, 990
BmrFI CCNGG 6 cut(s) 669, 696, 776, 777, 981, 1019
BmsI GCATC 1 cut(s) 454
BpiI GAAGAC 2 cut(s) 8, 510
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 627
Bpu14I TTCGAA 1 cut(s) 675
BpuMI CCSGG 4 cut(s) 776, 777, 981, 1019
BsaBI GATNNNNATC 2 cut(s) 239, 368
BsaHI GRCGYC 1 cut(s) 593
BsaJI CCNNGG 4 cut(s) 442, 775, 949, 1018
BsaWI WCCGGW 1 cut(s) 702
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 2 cut(s) 46, 487
Bse3DI GCAATG 1 cut(s) 902
Bse8I GATNNNNATC 2 cut(s) 239, 368
BseBI CCWGG 2 cut(s) 669, 696
BseDI CCNNGG 4 cut(s) 442, 775, 949, 1018
BseJI GATNNNNATC 2 cut(s) 239, 368
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMI GCAATG 1 cut(s) 902
BseMII CTCAG 1 cut(s) 869
BseNI ACTGG 2 cut(s) 46, 487
BseRI GAGGAG 2 cut(s) 372, 954
BseXI GCAGC 3 cut(s) 389, 523, 549
BseYI CCCAGC 4 cut(s) 558, 720, 746, 1005
BsgI GTGCAG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 2 cut(s) 58, 1048
BshNI GGYRCC 1 cut(s) 988
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 4 cut(s) 292, 506, 547, 856
BsiHKCI CYCGRG 2 cut(s) 775, 908
BsiSI CCGG 4 cut(s) 703, 776, 981, 1018
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 2 cut(s) 65, 1020
BsmBI CGTCTC 2 cut(s) 65, 1020
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 2 cut(s) 58, 1048
BsoBI CYCGRG 2 cut(s) 775, 908
Bsp119I TTCGAA 1 cut(s) 675
Bsp1286I GDGCHC 4 cut(s) 292, 506, 547, 856
Bsp143I GATC 7 cut(s) 112, 265, 363, 554, 827, 887, 953
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 7 cut(s) 325, 681, 743, 882, 885, 920, 992
BspANI GGCC 2 cut(s) 58, 1048
BspCNI CTCAG 1 cut(s) 868
BspLI GGNNCC 3 cut(s) 139, 707, 990
BspMI ACCTGC 1 cut(s) 1000
BspPI GGATC 5 cut(s) 371, 549, 835, 895, 961
BspT104I TTCGAA 1 cut(s) 675
BspT107I GGYRCC 1 cut(s) 988
BsrBI CCGCTC 2 cut(s) 325, 882
BsrDI GCAATG 1 cut(s) 902
BsrI ACTGG 2 cut(s) 46, 487
BssECI CCNNGG 4 cut(s) 442, 775, 949, 1018
BssMI GATC 7 cut(s) 112, 265, 363, 554, 827, 887, 953
BssNI GRCGYC 1 cut(s) 593
BssT1I CCWWGG 2 cut(s) 442, 949
Bst2UI CCWGG 2 cut(s) 669, 696
Bst4CI ACNGT 7 cut(s) 76, 82, 157, 612, 851, 1031, 1061
BstACI GRCGYC 1 cut(s) 593
BstBI TTCGAA 1 cut(s) 675
BstC8I GCNNGC 3 cut(s) 292, 543, 752
BstDEI CTNAG 2 cut(s) 392, 855
BstDSI CCRYGG 1 cut(s) 442
BstEII GGTNACC 1 cut(s) 482
BstENI CCTNNNNNAGG 1 cut(s) 693
BstKTI GATC 7 cut(s) 115, 268, 366, 557, 830, 890, 956
BstMAI GTCTC 2 cut(s) 65, 1020
BstMBI GATC 7 cut(s) 112, 265, 363, 554, 827, 887, 953
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 222, 599, 751
BstNI CCWGG 2 cut(s) 669, 696
BstPI GGTNACC 1 cut(s) 482
BstSCI CCNGG 6 cut(s) 667, 694, 774, 775, 979, 1017
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 3 cut(s) 389, 523, 549
BstV2I GAAGAC 2 cut(s) 8, 510
BstX2I RGATCY 2 cut(s) 363, 554
BstYI RGATCY 2 cut(s) 363, 554
BsuI GTATCC 3 cut(s) 819, 924, 969
BsuRI GGCC 2 cut(s) 58, 1048
BtgI CCRYGG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 3 cut(s) 292, 543, 752
Cfr9I CCCGGG 1 cut(s) 775
CseI GACGC 1 cut(s) 582
Csp6I GTAC 1 cut(s) 859
CviAII CATG 5 cut(s) 269, 428, 434, 443, 972
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 2 cut(s) 392, 855
DpnI GATC 7 cut(s) 114, 267, 365, 556, 829, 889, 955
DpnII GATC 7 cut(s) 112, 265, 363, 554, 827, 887, 953
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 1046
EciI GGCGGA 1 cut(s) 900
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 2 cut(s) 442, 949
Eco147I AGGCCT 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 547
Eco53kI GAGCTC 1 cut(s) 545
Eco57I CTGAAG 3 cut(s) 425, 504, 510
Eco88I CYCGRG 2 cut(s) 775, 908
Eco91I GGTNACC 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 545
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoO65I GGTNACC 1 cut(s) 482
EcoRII CCWGG 2 cut(s) 667, 694
EcoT14I CCWWGG 2 cut(s) 442, 949
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 2 cut(s) 442, 949
Esp3I CGTCTC 2 cut(s) 65, 1020
FaeI CATG 5 cut(s) 272, 431, 437, 446, 975
FaiI YATR 9 cut(s) 246, 270, 316, 429, 435, 444, 728, 737, 973
FaqI GGGAC 1 cut(s) 75
FatI CATG 5 cut(s) 268, 427, 433, 442, 971
FauI CCCGC 1 cut(s) 927
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 4 cut(s) 378, 512, 563, 883
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 4 cut(s) 378, 512, 563, 883
FspBI CTAG 2 cut(s) 194, 684
GluI GCNGC 4 cut(s) 378, 512, 563, 883
GsaI CCCAGC 4 cut(s) 562, 724, 750, 1009
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 2 cut(s) 58, 1048
HapII CCGG 4 cut(s) 703, 776, 981, 1018
HgaI GACGC 1 cut(s) 582
Hin1I GRCGYC 1 cut(s) 593
Hin1II CATG 5 cut(s) 272, 431, 437, 446, 975
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HpaI GTTAAC 1 cut(s) 1015
HpaII CCGG 4 cut(s) 703, 776, 981, 1018
HphI GGTGA 1 cut(s) 918
Hpy166II GTNNAC 4 cut(s) 208, 578, 782, 1015
Hpy188III TCNNGA 6 cut(s) 92, 349, 403, 615, 631, 644
Hpy8I GTNNAC 4 cut(s) 208, 578, 782, 1015
Hpy99I CGWCG 4 cut(s) 37, 70, 173, 180
HpyAV CCTTC 4 cut(s) 69, 353, 813, 933
HpyCH4III ACNGT 7 cut(s) 76, 82, 157, 612, 851, 1031, 1061
HpyCH4V TGCA 7 cut(s) 239, 377, 467, 511, 565, 602, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 599, 751
HpyF3I CTNAG 2 cut(s) 392, 855
Hsp92I GRCGYC 1 cut(s) 593
Hsp92II CATG 5 cut(s) 272, 431, 437, 446, 975
Ksp22I TGATCA 1 cut(s) 265
KspAI GTTAAC 1 cut(s) 1015
Kzo9I GATC 7 cut(s) 112, 265, 363, 554, 827, 887, 953
LmnI GCTCC 2 cut(s) 385, 550
Lsp1109I GCAGC 3 cut(s) 389, 523, 549
LweI GCATC 1 cut(s) 454
MaeI CTAG 2 cut(s) 194, 684
MaeIII GTNAC 4 cut(s) 76, 142, 482, 606
MalI GATC 7 cut(s) 114, 267, 365, 556, 829, 889, 955
MbiI CCGCTC 2 cut(s) 325, 882
MboI GATC 7 cut(s) 112, 265, 363, 554, 827, 887, 953
MboII GAAGA 7 cut(s) 8, 107, 346, 358, 418, 488, 510
MflI RGATCY 2 cut(s) 363, 554
MhlI GDGCHC 4 cut(s) 292, 506, 547, 856
MlsI TGGCCA 1 cut(s) 1048
MluCI AATT 4 cut(s) 9, 634, 839, 943
MluNI TGGCCA 1 cut(s) 1048
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 89, 836
Mox20I TGGCCA 1 cut(s) 1048
MroXI GAANNNNTTC 1 cut(s) 136
MscI TGGCCA 1 cut(s) 1048
MseI TTAA 3 cut(s) 551, 846, 1014
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 1048
MspA1I CMGCKG 1 cut(s) 562
MspI CCGG 4 cut(s) 703, 776, 981, 1018
MspR9I CCNGG 6 cut(s) 669, 696, 776, 777, 981, 1019
MvaI CCWGG 2 cut(s) 669, 696
MwoI GCNNNNNNNGC 3 cut(s) 222, 599, 751
NciI CCSGG 4 cut(s) 776, 777, 981, 1019
NcoI CCATGG 1 cut(s) 442
NdeII GATC 7 cut(s) 112, 265, 363, 554, 827, 887, 953
NlaIII CATG 5 cut(s) 272, 431, 437, 446, 975
NlaIV GGNNCC 3 cut(s) 139, 707, 990
NmuCI GTSAC 2 cut(s) 142, 606
NspV TTCGAA 1 cut(s) 675
PceI AGGCCT 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 184
PdmI GAANNNNTTC 1 cut(s) 136
PfoI TCCNGGA 2 cut(s) 667, 979
PkrI GCNGC 4 cut(s) 379, 513, 564, 884
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 547
Psp6I CCWGG 2 cut(s) 667, 694
PspEI GGTNACC 1 cut(s) 482
PspFI CCCAGC 4 cut(s) 558, 720, 746, 1005
PspGI CCWGG 2 cut(s) 667, 694
PspN4I GGNNCC 3 cut(s) 139, 707, 990
PsuI RGATCY 2 cut(s) 363, 554
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 1 cut(s) 547
SaqAI TTAA 3 cut(s) 551, 846, 1014
SatI GCNGC 4 cut(s) 378, 512, 563, 883
Sau3AI GATC 7 cut(s) 112, 265, 363, 554, 827, 887, 953
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 6 cut(s) 669, 696, 776, 777, 981, 1019
SduI GDGCHC 4 cut(s) 292, 506, 547, 856
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 675
SmaI CCCGGG 1 cut(s) 777
SmiMI CAYNNNNRTG 1 cut(s) 432
Sse9I AATT 4 cut(s) 9, 634, 839, 943
SseBI AGGCCT 1 cut(s) 58
SsiI CCGC 7 cut(s) 325, 681, 743, 882, 885, 920, 992
SspMI CTAG 2 cut(s) 194, 684
SstI GAGCTC 1 cut(s) 547
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 6 cut(s) 667, 694, 774, 775, 979, 1017
StyI CCWWGG 2 cut(s) 442, 949
TaaI ACNGT 7 cut(s) 76, 82, 157, 612, 851, 1031, 1061
TaqI TCGA 1 cut(s) 675
TaqII GACCGA 1 cut(s) 161
TasI AATT 4 cut(s) 9, 634, 839, 943
TauI GCSGC 1 cut(s) 885
Tru1I TTAA 3 cut(s) 551, 846, 1014
Tru9I TTAA 3 cut(s) 551, 846, 1014
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 2 cut(s) 142, 606
TseI GCWGC 3 cut(s) 377, 511, 562
Tsp45I GTSAC 2 cut(s) 142, 606
TspDTI ATGAA 4 cut(s) 358, 743, 779, 891
TspGWI ACGGA 3 cut(s) 50, 83, 130
TspMI CCCGGG 1 cut(s) 775
TspRI CASTG 1 cut(s) 301
XagI CCTNNNNNAGG 1 cut(s) 693
XapI RAATTY 2 cut(s) 9, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmaI CCCGGG 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 2 cut(s) 194, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.