E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G01160 AT5G01160 |
| fragaria_vesca | FvH4_6g12190 FvH4_6g12190 |
| malus_domestica | MD04G1145200.v1.1 MD12G1159000.v1.1 |
| prunus_persica | Prupe.6G269500_v2.0.a1 |
| pyrus_communis | pycom04g13140 pycom12g15090 |
| rosa_chinensis | RchiOBHm_Chr3g0463991 |
| rosa_laevigata | RLG00000024729 |
| rosa_multiflora | Rmu_sc0006492.1_g000009 |
| rosa_roxburghii | Rroxscaffold_6G00416080 |
| rosa_rugosa | Rorug03G0069900 |
| rosa_samantha | Rh3AG126800 Rh3BG130700 Rh3CG133300 Rh3DG132200 |
| rosa_wichuraiana | Rw3G010710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 80 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 647, 929, 947 |
| AccBSI | CCGCTC | 2 cut(s) | 159, 359 |
| AclWI | GGATC | 6 cut(s) | 10, 350, 940, 1154, 1259, 1272 |
| AcoI | YGGCCR | 4 cut(s) | 102, 151, 769, 1375 |
| AcsI | RAATTY | 4 cut(s) | 395, 553, 654, 1048 |
| AcuI | CTGAAG | 3 cut(s) | 44, 404, 887 |
| AfaI | GTAC | 3 cut(s) | 885, 969, 1038 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 44, 100, 496, 641, 647, 929, 947, 1247 |
| AgsI | TTSAA | 6 cut(s) | 282, 401, 467, 552, 593, 1204 |
| AjnI | CCWGG | 6 cut(s) | 640, 688, 1027, 1057, 1117, 1245 |
| AleI | CACNNNNGTG | 1 cut(s) | 192 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1227, 1259 |
| AluBI | AGCT | 7 cut(s) | 172, 521, 584, 735, 1112, 1336, 1383 |
| AluI | AGCT | 7 cut(s) | 172, 521, 584, 735, 1112, 1336, 1383 |
| Alw21I | GWGCWC | 3 cut(s) | 523, 754, 955 |
| Alw26I | GTCTC | 4 cut(s) | 44, 374, 410, 800 |
| AlwI | GGATC | 6 cut(s) | 10, 350, 940, 1154, 1259, 1272 |
| Ama87I | CYCGRG | 1 cut(s) | 516 |
| AoxI | GGCC | 7 cut(s) | 102, 151, 530, 614, 701, 769, 1375 |
| ApeKI | GCWGC | 3 cut(s) | 625, 787, 844 |
| ApoI | RAATTY | 4 cut(s) | 395, 553, 654, 1048 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 306 |
| AspS9I | GGNCC | 1 cut(s) | 1008 |
| AsuHPI | GGTGA | 2 cut(s) | 1138, 1370 |
| AvaI | CYCGRG | 1 cut(s) | 516 |
| AvaII | GGWCC | 1 cut(s) | 1008 |
| BalI | TGGCCA | 2 cut(s) | 104, 1377 |
| BamHI | GGATCC | 1 cut(s) | 1264 |
| BanII | GRGCYC | 2 cut(s) | 239, 523 |
| BbsI | GAAGAC | 2 cut(s) | 529, 581 |
| Bbv12I | GWGCWC | 3 cut(s) | 523, 754, 955 |
| BbvCI | CCTCAGC | 1 cut(s) | 1209 |
| BbvI | GCAGC | 3 cut(s) | 637, 799, 856 |
| BccI | CCATC | 7 cut(s) | 155, 452, 732, 923, 958, 1133, 1367 |
| BceAI | ACGGC | 1 cut(s) | 513 |
| BciT130I | CCWGG | 6 cut(s) | 642, 690, 1029, 1059, 1119, 1247 |
| BcoDI | GTCTC | 4 cut(s) | 44, 374, 410, 800 |
| BfaI | CTAG | 3 cut(s) | 270, 546, 1384 |
| BfmI | CTRYAG | 2 cut(s) | 434, 1134 |
| BglII | AGATCT | 1 cut(s) | 673 |
| BisI | GCNGC | 8 cut(s) | 63, 129, 154, 157, 357, 626, 788, 845 |
| BlsI | GCNGC | 8 cut(s) | 64, 130, 155, 158, 358, 627, 789, 846 |
| Bme1390I | CCNGG | 6 cut(s) | 642, 690, 1029, 1059, 1119, 1247 |
| Bme18I | GGWCC | 1 cut(s) | 1008 |
| BmeT110I | CYCGRG | 1 cut(s) | 516 |
| BmgT120I | GGNCC | 1 cut(s) | 1008 |
| BmiI | GGNNCC | 3 cut(s) | 118, 1009, 1266 |
| BmrFI | CCNGG | 6 cut(s) | 642, 690, 1029, 1059, 1119, 1247 |
| BmrI | ACTGGG | 2 cut(s) | 553, 917 |
| BmsI | GCATC | 4 cut(s) | 509, 882, 1301, 1337 |
| BmuI | ACTGGG | 2 cut(s) | 553, 917 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1365 |
| BpiI | GAAGAC | 2 cut(s) | 529, 581 |
| BpmI | CTGGAG | 2 cut(s) | 624, 1308 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1209 |
| BpuEI | CTTGAG | 1 cut(s) | 1149 |
| BsaBI | GATNNNNATC | 1 cut(s) | 218 |
| BsaI | GGTCTC | 1 cut(s) | 44 |
| BsaJI | CCNNGG | 8 cut(s) | 42, 105, 527, 611, 1027, 1118, 1246, 1268 |
| BsaWI | WCCGGW | 1 cut(s) | 97 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 622, 652 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 44, 100, 496, 641, 647, 929, 947, 1247 |
| Bse1I | ACTGG | 5 cut(s) | 533, 559, 617, 772, 923 |
| Bse3DI | GCAATG | 1 cut(s) | 1236 |
| Bse8I | GATNNNNATC | 1 cut(s) | 218 |
| BseBI | CCWGG | 6 cut(s) | 642, 690, 1029, 1059, 1119, 1247 |
| BseDI | CCNNGG | 8 cut(s) | 42, 105, 527, 611, 1027, 1118, 1246, 1268 |
| BseGI | GGATG | 3 cut(s) | 408, 463, 994 |
| BseJI | GATNNNNATC | 1 cut(s) | 218 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 44, 100, 496, 641, 647, 929, 947, 1247 |
| BseMI | GCAATG | 1 cut(s) | 1236 |
| BseMII | CTCAG | 5 cut(s) | 224, 691, 795, 1170, 1223 |
| BseNI | ACTGG | 5 cut(s) | 533, 559, 617, 772, 923 |
| BseRI | GAGGAG | 4 cut(s) | 351, 403, 1144, 1311 |
| BseX3I | CGGCCG | 1 cut(s) | 151 |
| BseXI | GCAGC | 3 cut(s) | 637, 799, 856 |
| Bsh1285I | CGRYCG | 2 cut(s) | 154, 686 |
| BshFI | GGCC | 7 cut(s) | 104, 153, 532, 616, 703, 771, 1377 |
| BsiEI | CGRYCG | 2 cut(s) | 154, 686 |
| BsiHKAI | GWGCWC | 3 cut(s) | 523, 754, 955 |
| BsiHKCI | CYCGRG | 1 cut(s) | 516 |
| BsiSI | CCGG | 2 cut(s) | 98, 768 |
| BslFI | GGGAC | 1 cut(s) | 1008 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 44, 100, 496, 641, 647, 929, 947, 1247 |
| BsmAI | GTCTC | 4 cut(s) | 44, 374, 410, 800 |
| BsmFI | GGGAC | 1 cut(s) | 1008 |
| BsmI | GAATGC | 2 cut(s) | 835, 1084 |
| BsnI | GGCC | 7 cut(s) | 104, 153, 532, 616, 703, 771, 1377 |
| Bso31I | GGTCTC | 1 cut(s) | 44 |
| BsoBI | CYCGRG | 1 cut(s) | 516 |
| Bsp1286I | GDGCHC | 4 cut(s) | 239, 523, 754, 955 |
| Bsp143I | GATC | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| BspANI | GGCC | 7 cut(s) | 104, 153, 532, 616, 703, 771, 1377 |
| BspCNI | CTCAG | 5 cut(s) | 225, 690, 796, 1169, 1222 |
| BspLI | GGNNCC | 3 cut(s) | 118, 1009, 1266 |
| BspMAI | CTGCAG | 1 cut(s) | 1138 |
| BspPI | GGATC | 6 cut(s) | 10, 350, 940, 1154, 1259, 1272 |
| BspTNI | GGTCTC | 1 cut(s) | 44 |
| BsrBI | CCGCTC | 2 cut(s) | 159, 359 |
| BsrDI | GCAATG | 1 cut(s) | 1236 |
| BsrI | ACTGG | 5 cut(s) | 533, 559, 617, 772, 923 |
| BssECI | CCNNGG | 8 cut(s) | 42, 105, 527, 611, 1027, 1118, 1246, 1268 |
| BssMI | GATC | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| BssT1I | CCWWGG | 4 cut(s) | 105, 527, 611, 1268 |
| Bst2UI | CCWGG | 6 cut(s) | 642, 690, 1029, 1059, 1119, 1247 |
| Bst4CI | ACNGT | 3 cut(s) | 55, 572, 1071 |
| Bst6I | CTCTTC | 1 cut(s) | 380 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 841 |
| BstC8I | GCNNGC | 3 cut(s) | 67, 179, 1110 |
| BstDEI | CTNAG | 5 cut(s) | 233, 677, 804, 1156, 1209 |
| BstF5I | GGATG | 3 cut(s) | 408, 463, 994 |
| BstKTI | GATC | 6 cut(s) | 18, 345, 676, 935, 1162, 1267 |
| BstMAI | GTCTC | 4 cut(s) | 44, 374, 410, 800 |
| BstMBI | GATC | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| BstMCI | CGRYCG | 2 cut(s) | 154, 686 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 128, 178, 622, 841, 1088 |
| BstNI | CCWGG | 6 cut(s) | 642, 690, 1029, 1059, 1119, 1247 |
| BstNSI | RCATGY | 2 cut(s) | 251, 425 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1365 |
| BstSCI | CCNGG | 6 cut(s) | 640, 688, 1027, 1057, 1117, 1245 |
| BstSFI | CTRYAG | 2 cut(s) | 434, 1134 |
| BstV1I | GCAGC | 3 cut(s) | 637, 799, 856 |
| BstV2I | GAAGAC | 2 cut(s) | 529, 581 |
| BstX2I | RGATCY | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1074 |
| BstYI | RGATCY | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| BstZI | CGGCCG | 1 cut(s) | 151 |
| BsuRI | GGCC | 7 cut(s) | 104, 153, 532, 616, 703, 771, 1377 |
| BtsCI | GGATG | 3 cut(s) | 408, 463, 994 |
| BtsI | GCAGTG | 1 cut(s) | 510 |
| BtsIMutI | CAGTG | 1 cut(s) | 510 |
| Cac8I | GCNNGC | 3 cut(s) | 67, 179, 1110 |
| Cfr13I | GGNCC | 1 cut(s) | 1008 |
| CsiI | ACCWGGT | 1 cut(s) | 1057 |
| Csp6I | GTAC | 3 cut(s) | 884, 968, 1037 |
| CviQI | GTAC | 3 cut(s) | 884, 968, 1037 |
| DdeI | CTNAG | 5 cut(s) | 233, 677, 804, 1156, 1209 |
| DpnI | GATC | 6 cut(s) | 17, 344, 675, 934, 1161, 1266 |
| DpnII | GATC | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 80 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 80 |
| EaeI | YGGCCR | 4 cut(s) | 102, 151, 769, 1375 |
| EagI | CGGCCG | 1 cut(s) | 151 |
| Eam1104I | CTCTTC | 1 cut(s) | 380 |
| EarI | CTCTTC | 1 cut(s) | 380 |
| EciI | GGCGGA | 2 cut(s) | 109, 1305 |
| Ecl136II | GAGCTC | 1 cut(s) | 521 |
| EclXI | CGGCCG | 1 cut(s) | 151 |
| Eco130I | CCWWGG | 4 cut(s) | 105, 527, 611, 1268 |
| Eco147I | AGGCCT | 1 cut(s) | 703 |
| Eco24I | GRGCYC | 2 cut(s) | 239, 523 |
| Eco31I | GGTCTC | 1 cut(s) | 44 |
| Eco47I | GGWCC | 1 cut(s) | 1008 |
| Eco52I | CGGCCG | 1 cut(s) | 151 |
| Eco53kI | GAGCTC | 1 cut(s) | 521 |
| Eco57I | CTGAAG | 3 cut(s) | 44, 404, 887 |
| Eco88I | CYCGRG | 1 cut(s) | 516 |
| EcoICRI | GAGCTC | 1 cut(s) | 521 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1008 |
| EcoRII | CCWGG | 6 cut(s) | 640, 688, 1027, 1057, 1117, 1245 |
| EcoT14I | CCWWGG | 4 cut(s) | 105, 527, 611, 1268 |
| EcoT22I | ATGCAT | 1 cut(s) | 837 |
| EcoT38I | GRGCYC | 2 cut(s) | 239, 523 |
| ErhI | CCWWGG | 4 cut(s) | 105, 527, 611, 1268 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 573, 605 |
| FaqI | GGGAC | 1 cut(s) | 1008 |
| Fnu4HI | GCNGC | 8 cut(s) | 63, 129, 154, 157, 357, 626, 788, 845 |
| FokI | GGATG | 3 cut(s) | 395, 470, 1001 |
| FriOI | GRGCYC | 2 cut(s) | 239, 523 |
| Fsp4HI | GCNGC | 8 cut(s) | 63, 129, 154, 157, 357, 626, 788, 845 |
| FspBI | CTAG | 3 cut(s) | 270, 546, 1384 |
| GluI | GCNGC | 8 cut(s) | 63, 129, 154, 157, 357, 626, 788, 845 |
| GsuI | CTGGAG | 2 cut(s) | 624, 1308 |
| HaeIII | GGCC | 7 cut(s) | 104, 153, 532, 616, 703, 771, 1377 |
| HapII | CCGG | 2 cut(s) | 98, 768 |
| HincII | GTYRAC | 1 cut(s) | 58 |
| HindII | GTYRAC | 1 cut(s) | 58 |
| HindIII | AAGCTT | 1 cut(s) | 733 |
| HinfI | GANTC | 9 cut(s) | 278, 316, 401, 467, 506, 740, 764, 808, 977 |
| HpaII | CCGG | 2 cut(s) | 98, 768 |
| HphI | GGTGA | 2 cut(s) | 1138, 1370 |
| Hpy166II | GTNNAC | 3 cut(s) | 58, 187, 245 |
| Hpy188III | TCNNGA | 4 cut(s) | 142, 211, 981, 1370 |
| Hpy8I | GTNNAC | 3 cut(s) | 58, 187, 245 |
| Hpy99I | CGWCG | 1 cut(s) | 168 |
| HpyAV | CCTTC | 4 cut(s) | 22, 104, 440, 911 |
| HpyCH4III | ACNGT | 3 cut(s) | 55, 572, 1071 |
| HpyCH4IV | ACGT | 1 cut(s) | 304 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 128, 178, 622, 841, 1088 |
| HpyF3I | CTNAG | 5 cut(s) | 233, 677, 804, 1156, 1209 |
| HpySE526I | ACGT | 1 cut(s) | 304 |
| Kzo9I | GATC | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| LmnI | GCTCC | 6 cut(s) | 122, 164, 364, 526, 757, 958 |
| Lsp1109I | GCAGC | 3 cut(s) | 637, 799, 856 |
| LweI | GCATC | 4 cut(s) | 509, 882, 1301, 1337 |
| MabI | ACCWGGT | 1 cut(s) | 1057 |
| MaeI | CTAG | 3 cut(s) | 270, 546, 1384 |
| MaeII | ACGT | 1 cut(s) | 304 |
| MaeIII | GTNAC | 4 cut(s) | 31, 493, 1305, 1358 |
| MalI | GATC | 6 cut(s) | 17, 344, 675, 934, 1161, 1266 |
| MbiI | CCGCTC | 2 cut(s) | 159, 359 |
| MboI | GATC | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| MboII | GAAGA | 6 cut(s) | 37, 325, 337, 397, 529, 581 |
| MflI | RGATCY | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| MhlI | GDGCHC | 4 cut(s) | 239, 523, 754, 955 |
| MlsI | TGGCCA | 2 cut(s) | 104, 1377 |
| MluCI | AATT | 7 cut(s) | 395, 462, 553, 654, 853, 871, 1048 |
| MluNI | TGGCCA | 2 cut(s) | 104, 1377 |
| MlyI | GAGTC | 2 cut(s) | 773, 802 |
| MmeI | TCCRAC | 1 cut(s) | 43 |
| Mox20I | TGGCCA | 2 cut(s) | 104, 1377 |
| Mph1103I | ATGCAT | 1 cut(s) | 837 |
| MroXI | GAANNNNTTC | 1 cut(s) | 306 |
| MscI | TGGCCA | 2 cut(s) | 104, 1377 |
| MseI | TTAA | 1 cut(s) | 327 |
| MslI | CAYNNNNRTG | 3 cut(s) | 192, 411, 570 |
| Msp20I | TGGCCA | 2 cut(s) | 104, 1377 |
| MspA1I | CMGCKG | 1 cut(s) | 201 |
| MspI | CCGG | 2 cut(s) | 98, 768 |
| MspR9I | CCNGG | 6 cut(s) | 642, 690, 1029, 1059, 1119, 1247 |
| Mva1269I | GAATGC | 2 cut(s) | 835, 1084 |
| MvaI | CCWGG | 6 cut(s) | 642, 690, 1029, 1059, 1119, 1247 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 128, 178, 622, 841, 1088 |
| NdeII | GATC | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| NlaIV | GGNNCC | 3 cut(s) | 118, 1009, 1266 |
| NmeAIII | GCCGAG | 1 cut(s) | 153 |
| NmuCI | GTSAC | 2 cut(s) | 1305, 1358 |
| NsiI | ATGCAT | 1 cut(s) | 837 |
| NspI | RCATGY | 2 cut(s) | 251, 425 |
| OliI | CACNNNNGTG | 1 cut(s) | 192 |
| PceI | AGGCCT | 1 cut(s) | 703 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 87, 592 |
| PctI | GAATGC | 2 cut(s) | 835, 1084 |
| PdmI | GAANNNNTTC | 1 cut(s) | 306 |
| PfeI | GAWTC | 7 cut(s) | 278, 316, 401, 467, 506, 740, 977 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 647, 929, 947 |
| PkrI | GCNGC | 8 cut(s) | 64, 130, 155, 158, 358, 627, 789, 846 |
| PleI | GAGTC | 2 cut(s) | 772, 802 |
| PpsI | GAGTC | 2 cut(s) | 772, 802 |
| PpuMI | RGGWCCY | 1 cut(s) | 1008 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1365 |
| Psp124BI | GAGCTC | 1 cut(s) | 523 |
| Psp5II | RGGWCCY | 1 cut(s) | 1008 |
| Psp6I | CCWGG | 6 cut(s) | 640, 688, 1027, 1057, 1117, 1245 |
| PspGI | CCWGG | 6 cut(s) | 640, 688, 1027, 1057, 1117, 1245 |
| PspN4I | GGNNCC | 3 cut(s) | 118, 1009, 1266 |
| PspPI | GGNCC | 1 cut(s) | 1008 |
| PspPPI | RGGWCCY | 1 cut(s) | 1008 |
| PstI | CTGCAG | 1 cut(s) | 1138 |
| PsuI | RGATCY | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| RsaI | GTAC | 3 cut(s) | 885, 969, 1038 |
| RsaNI | GTAC | 3 cut(s) | 884, 968, 1037 |
| RseI | CAYNNNNRTG | 3 cut(s) | 192, 411, 570 |
| SacI | GAGCTC | 1 cut(s) | 523 |
| SaqAI | TTAA | 1 cut(s) | 327 |
| SatI | GCNGC | 8 cut(s) | 63, 129, 154, 157, 357, 626, 788, 845 |
| Sau3AI | GATC | 6 cut(s) | 15, 342, 673, 932, 1159, 1264 |
| Sau96I | GGNCC | 1 cut(s) | 1008 |
| SchI | GAGTC | 2 cut(s) | 773, 802 |
| ScrFI | CCNGG | 6 cut(s) | 642, 690, 1029, 1059, 1119, 1247 |
| SduI | GDGCHC | 4 cut(s) | 239, 523, 754, 955 |
| SexAI | ACCWGGT | 1 cut(s) | 1057 |
| SfaNI | GCATC | 4 cut(s) | 509, 882, 1301, 1337 |
| SfcI | CTRYAG | 2 cut(s) | 434, 1134 |
| SinI | GGWCC | 1 cut(s) | 1008 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 192, 411, 570 |
| SmlI | CTYRAG | 1 cut(s) | 1164 |
| SmoI | CTYRAG | 1 cut(s) | 1164 |
| Sse9I | AATT | 7 cut(s) | 395, 462, 553, 654, 853, 871, 1048 |
| SseBI | AGGCCT | 1 cut(s) | 703 |
| SspMI | CTAG | 3 cut(s) | 270, 546, 1384 |
| SstI | GAGCTC | 1 cut(s) | 523 |
| StuI | AGGCCT | 1 cut(s) | 703 |
| StyD4I | CCNGG | 6 cut(s) | 640, 688, 1027, 1057, 1117, 1245 |
| StyI | CCWWGG | 4 cut(s) | 105, 527, 611, 1268 |
| TaaI | ACNGT | 3 cut(s) | 55, 572, 1071 |
| TaiI | ACGT | 1 cut(s) | 307 |
| TaqI | TCGA | 1 cut(s) | 1369 |
| TasI | AATT | 7 cut(s) | 395, 462, 553, 654, 853, 871, 1048 |
| TatI | WGTACW | 1 cut(s) | 883 |
| TauI | GCSGC | 5 cut(s) | 65, 131, 156, 159, 359 |
| TfiI | GAWTC | 7 cut(s) | 278, 316, 401, 467, 506, 740, 977 |
| Tru1I | TTAA | 1 cut(s) | 327 |
| Tru9I | TTAA | 1 cut(s) | 327 |
| TscAI | CASTG | 1 cut(s) | 517 |
| TseFI | GTSAC | 2 cut(s) | 1305, 1358 |
| TseI | GCWGC | 3 cut(s) | 625, 787, 844 |
| Tsp45I | GTSAC | 2 cut(s) | 1305, 1358 |
| TspDTI | ATGAA | 4 cut(s) | 315, 337, 732, 1061 |
| TspGWI | ACGGA | 1 cut(s) | 493 |
| TspRI | CASTG | 1 cut(s) | 517 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 647, 929, 947 |
| VpaK11BI | GGWCC | 1 cut(s) | 1008 |
| XapI | RAATTY | 4 cut(s) | 395, 553, 654, 1048 |
| XceI | RCATGY | 2 cut(s) | 251, 425 |
| XmnI | GAANNNNTTC | 1 cut(s) | 306 |
| XspI | CTAG | 3 cut(s) | 270, 546, 1384 |
| Zsp2I | ATGCAT | 1 cut(s) | 837 |