FvH4_6g12190

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
7366573 .. 7369143
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12190.t1

Sequence Viewer

Length: 1386 bp
ATGACGATGCTTCAGATCCGACTGAAGAAGGTTACACCAACCGAGGGCGAGACCGTCAACGCCGCTTGCCCTGACCACCTCGTCCTCGCCGACCTTCCGGTGGCCAAGGGCATTGGCTCCGCCACCGCCGCTTCGCTTGTCAAGACCATCGGCCGCCGCTCCCGTCGTCAGCTCGGCGAGCGTGTCCACTTTTGTGTCCGCTGTGATTTCCCGATTGCTATCTATGGGCGACTGAGCCCTTGTGAACATGCGTTTTGCTTGGATTGTGCTAGGAGTGATTCAATCTGCTACCTTTGTGATGAACGTATTCAGAAGATTCAGACTATTAAAATCATGGAGGGGATCTTCATTTGTGCCGCTCCTCATTGTCTCAAATCCTTTCTGAAGAGGAGTGAATTTGAATCTCACATCCATGAGACACATGCACACCTTCTACAGCCAAATGCGGAGAAAATGGATGGAATTGAATCAGAAGCACGGAGTAAGAACCAAGTTACGGCATCTGAATCCACTGCCCGAGCTCCACCAAGGCCAGTCTTCTCTCCTAGTTCAAATTCCCAGTTCCATGACCGTGATGACAAAGCTCGTCTTCAACGAGAACAATCACTTCCAAGGCCAGTCATGCAGCCTACACCACCTCCAGGTTTTGGACAAATTCAGAATAATCCACCAGATCTCAGCCGACCGCCAGGCTTTGACAGGCCTGTTCCCCAAAATCTCTACCATCAACAAAGCTTTGATTCATCAGGTGCTCCAATGCAGGAGTCCGGCCAGTTTTCAGATAAGCAGCAAGGAATGACATCTGAGACTCCCTTTTCTGAATACCCACCCATGCATTCTATGCAGCCCCCCAATTATGCAGTTCCTATCAATTCCAATCAAGTACAGATGATGCCCAACCTTCAGTTTGGCTATCCTTTCCCAGTTGATGGATCTCAACCATTCTATGGTGCTCCCTATCAGATGGTACGACAGGATTCTGGACAGGATGTGGGACAAGAACAGGGGTCCTTGTTGGGTTTCCCCCCAGGTTCAGTACCTAACATGAATTTTGCACCTGGTTATCCACAGTCTTGGAATGCAGGACAGGCTGGTGTTCCTTTTGAGCAAGCTACACCAGGGGGTCAAGGAACTGCAGATGGTTTCACCAACTCCTCAGATCCTCAAGGAAATGTTGCATATTATCAAGGTGGCATGAGTTTCAACCCTCAGCAGATGACAAACAAAGCAATGGAACAGCCATTCCAGGGTGGTAATGCTATGGATCCAAGGGATAACAAAGGTATATTAGCATCACAGCCCATGTCACTTCCTCCGCCTCCTCCAGCATCACAGCTCAAACGCAAGTCTTATCAAGGTGACACAGGTCGAGATGGCCAGAGCTAG

Protein Analysis

462

Amino Acids

50.53

Weight (kDa)

6.42

Isoelectric Point (pI)

66.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012517)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccB7I CCANNNNNTGG 3 cut(s) 647, 929, 947
AccBSI CCGCTC 2 cut(s) 159, 359
AclWI GGATC 6 cut(s) 10, 350, 940, 1154, 1259, 1272
AcoI YGGCCR 4 cut(s) 102, 151, 769, 1375
AcsI RAATTY 4 cut(s) 395, 553, 654, 1048
AcuI CTGAAG 3 cut(s) 44, 404, 887
AfaI GTAC 3 cut(s) 885, 969, 1038
AfiI CCNNNNNNNGG 8 cut(s) 44, 100, 496, 641, 647, 929, 947, 1247
AgsI TTSAA 6 cut(s) 282, 401, 467, 552, 593, 1204
AjnI CCWGG 6 cut(s) 640, 688, 1027, 1057, 1117, 1245
AleI CACNNNNGTG 1 cut(s) 192
AloI GAACNNNNNNTCC 2 cut(s) 1227, 1259
AluBI AGCT 7 cut(s) 172, 521, 584, 735, 1112, 1336, 1383
AluI AGCT 7 cut(s) 172, 521, 584, 735, 1112, 1336, 1383
Alw21I GWGCWC 3 cut(s) 523, 754, 955
Alw26I GTCTC 4 cut(s) 44, 374, 410, 800
AlwI GGATC 6 cut(s) 10, 350, 940, 1154, 1259, 1272
Ama87I CYCGRG 1 cut(s) 516
AoxI GGCC 7 cut(s) 102, 151, 530, 614, 701, 769, 1375
ApeKI GCWGC 3 cut(s) 625, 787, 844
ApoI RAATTY 4 cut(s) 395, 553, 654, 1048
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 1008
AsuHPI GGTGA 2 cut(s) 1138, 1370
AvaI CYCGRG 1 cut(s) 516
AvaII GGWCC 1 cut(s) 1008
BalI TGGCCA 2 cut(s) 104, 1377
BamHI GGATCC 1 cut(s) 1264
BanII GRGCYC 2 cut(s) 239, 523
BbsI GAAGAC 2 cut(s) 529, 581
Bbv12I GWGCWC 3 cut(s) 523, 754, 955
BbvCI CCTCAGC 1 cut(s) 1209
BbvI GCAGC 3 cut(s) 637, 799, 856
BccI CCATC 7 cut(s) 155, 452, 732, 923, 958, 1133, 1367
BceAI ACGGC 1 cut(s) 513
BciT130I CCWGG 6 cut(s) 642, 690, 1029, 1059, 1119, 1247
BcoDI GTCTC 4 cut(s) 44, 374, 410, 800
BfaI CTAG 3 cut(s) 270, 546, 1384
BfmI CTRYAG 2 cut(s) 434, 1134
BglII AGATCT 1 cut(s) 673
BisI GCNGC 8 cut(s) 63, 129, 154, 157, 357, 626, 788, 845
BlsI GCNGC 8 cut(s) 64, 130, 155, 158, 358, 627, 789, 846
Bme1390I CCNGG 6 cut(s) 642, 690, 1029, 1059, 1119, 1247
Bme18I GGWCC 1 cut(s) 1008
BmeT110I CYCGRG 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 1008
BmiI GGNNCC 3 cut(s) 118, 1009, 1266
BmrFI CCNGG 6 cut(s) 642, 690, 1029, 1059, 1119, 1247
BmrI ACTGGG 2 cut(s) 553, 917
BmsI GCATC 4 cut(s) 509, 882, 1301, 1337
BmuI ACTGGG 2 cut(s) 553, 917
BoxI GACNNNNGTC 1 cut(s) 1365
BpiI GAAGAC 2 cut(s) 529, 581
BpmI CTGGAG 2 cut(s) 624, 1308
Bpu10I CCTNAGC 1 cut(s) 1209
BpuEI CTTGAG 1 cut(s) 1149
BsaBI GATNNNNATC 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 8 cut(s) 42, 105, 527, 611, 1027, 1118, 1246, 1268
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 8 cut(s) 44, 100, 496, 641, 647, 929, 947, 1247
Bse1I ACTGG 5 cut(s) 533, 559, 617, 772, 923
Bse3DI GCAATG 1 cut(s) 1236
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 6 cut(s) 642, 690, 1029, 1059, 1119, 1247
BseDI CCNNGG 8 cut(s) 42, 105, 527, 611, 1027, 1118, 1246, 1268
BseGI GGATG 3 cut(s) 408, 463, 994
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 8 cut(s) 44, 100, 496, 641, 647, 929, 947, 1247
BseMI GCAATG 1 cut(s) 1236
BseMII CTCAG 5 cut(s) 224, 691, 795, 1170, 1223
BseNI ACTGG 5 cut(s) 533, 559, 617, 772, 923
BseRI GAGGAG 4 cut(s) 351, 403, 1144, 1311
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 637, 799, 856
Bsh1285I CGRYCG 2 cut(s) 154, 686
BshFI GGCC 7 cut(s) 104, 153, 532, 616, 703, 771, 1377
BsiEI CGRYCG 2 cut(s) 154, 686
BsiHKAI GWGCWC 3 cut(s) 523, 754, 955
BsiHKCI CYCGRG 1 cut(s) 516
BsiSI CCGG 2 cut(s) 98, 768
BslFI GGGAC 1 cut(s) 1008
BslI CCNNNNNNNGG 8 cut(s) 44, 100, 496, 641, 647, 929, 947, 1247
BsmAI GTCTC 4 cut(s) 44, 374, 410, 800
BsmFI GGGAC 1 cut(s) 1008
BsmI GAATGC 2 cut(s) 835, 1084
BsnI GGCC 7 cut(s) 104, 153, 532, 616, 703, 771, 1377
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 516
Bsp1286I GDGCHC 4 cut(s) 239, 523, 754, 955
Bsp143I GATC 6 cut(s) 15, 342, 673, 932, 1159, 1264
BspANI GGCC 7 cut(s) 104, 153, 532, 616, 703, 771, 1377
BspCNI CTCAG 5 cut(s) 225, 690, 796, 1169, 1222
BspLI GGNNCC 3 cut(s) 118, 1009, 1266
BspMAI CTGCAG 1 cut(s) 1138
BspPI GGATC 6 cut(s) 10, 350, 940, 1154, 1259, 1272
BspTNI GGTCTC 1 cut(s) 44
BsrBI CCGCTC 2 cut(s) 159, 359
BsrDI GCAATG 1 cut(s) 1236
BsrI ACTGG 5 cut(s) 533, 559, 617, 772, 923
BssECI CCNNGG 8 cut(s) 42, 105, 527, 611, 1027, 1118, 1246, 1268
BssMI GATC 6 cut(s) 15, 342, 673, 932, 1159, 1264
BssT1I CCWWGG 4 cut(s) 105, 527, 611, 1268
Bst2UI CCWGG 6 cut(s) 642, 690, 1029, 1059, 1119, 1247
Bst4CI ACNGT 3 cut(s) 55, 572, 1071
Bst6I CTCTTC 1 cut(s) 380
BstAPI GCANNNNNTGC 1 cut(s) 841
BstC8I GCNNGC 3 cut(s) 67, 179, 1110
BstDEI CTNAG 5 cut(s) 233, 677, 804, 1156, 1209
BstF5I GGATG 3 cut(s) 408, 463, 994
BstKTI GATC 6 cut(s) 18, 345, 676, 935, 1162, 1267
BstMAI GTCTC 4 cut(s) 44, 374, 410, 800
BstMBI GATC 6 cut(s) 15, 342, 673, 932, 1159, 1264
BstMCI CGRYCG 2 cut(s) 154, 686
BstMWI GCNNNNNNNGC 5 cut(s) 128, 178, 622, 841, 1088
BstNI CCWGG 6 cut(s) 642, 690, 1029, 1059, 1119, 1247
BstNSI RCATGY 2 cut(s) 251, 425
BstPAI GACNNNNGTC 1 cut(s) 1365
BstSCI CCNGG 6 cut(s) 640, 688, 1027, 1057, 1117, 1245
BstSFI CTRYAG 2 cut(s) 434, 1134
BstV1I GCAGC 3 cut(s) 637, 799, 856
BstV2I GAAGAC 2 cut(s) 529, 581
BstX2I RGATCY 6 cut(s) 15, 342, 673, 932, 1159, 1264
BstXI CCANNNNNNTGG 1 cut(s) 1074
BstYI RGATCY 6 cut(s) 15, 342, 673, 932, 1159, 1264
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 7 cut(s) 104, 153, 532, 616, 703, 771, 1377
BtsCI GGATG 3 cut(s) 408, 463, 994
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 67, 179, 1110
Cfr13I GGNCC 1 cut(s) 1008
CsiI ACCWGGT 1 cut(s) 1057
Csp6I GTAC 3 cut(s) 884, 968, 1037
CviQI GTAC 3 cut(s) 884, 968, 1037
DdeI CTNAG 5 cut(s) 233, 677, 804, 1156, 1209
DpnI GATC 6 cut(s) 17, 344, 675, 934, 1161, 1266
DpnII GATC 6 cut(s) 15, 342, 673, 932, 1159, 1264
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 4 cut(s) 102, 151, 769, 1375
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 2 cut(s) 109, 1305
Ecl136II GAGCTC 1 cut(s) 521
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 4 cut(s) 105, 527, 611, 1268
Eco147I AGGCCT 1 cut(s) 703
Eco24I GRGCYC 2 cut(s) 239, 523
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 1008
Eco52I CGGCCG 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 521
Eco57I CTGAAG 3 cut(s) 44, 404, 887
Eco88I CYCGRG 1 cut(s) 516
EcoICRI GAGCTC 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 1008
EcoRII CCWGG 6 cut(s) 640, 688, 1027, 1057, 1117, 1245
EcoT14I CCWWGG 4 cut(s) 105, 527, 611, 1268
EcoT22I ATGCAT 1 cut(s) 837
EcoT38I GRGCYC 2 cut(s) 239, 523
ErhI CCWWGG 4 cut(s) 105, 527, 611, 1268
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 1 cut(s) 1008
Fnu4HI GCNGC 8 cut(s) 63, 129, 154, 157, 357, 626, 788, 845
FokI GGATG 3 cut(s) 395, 470, 1001
FriOI GRGCYC 2 cut(s) 239, 523
Fsp4HI GCNGC 8 cut(s) 63, 129, 154, 157, 357, 626, 788, 845
FspBI CTAG 3 cut(s) 270, 546, 1384
GluI GCNGC 8 cut(s) 63, 129, 154, 157, 357, 626, 788, 845
GsuI CTGGAG 2 cut(s) 624, 1308
HaeIII GGCC 7 cut(s) 104, 153, 532, 616, 703, 771, 1377
HapII CCGG 2 cut(s) 98, 768
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 733
HinfI GANTC 9 cut(s) 278, 316, 401, 467, 506, 740, 764, 808, 977
HpaII CCGG 2 cut(s) 98, 768
HphI GGTGA 2 cut(s) 1138, 1370
Hpy166II GTNNAC 3 cut(s) 58, 187, 245
Hpy188III TCNNGA 4 cut(s) 142, 211, 981, 1370
Hpy8I GTNNAC 3 cut(s) 58, 187, 245
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 4 cut(s) 22, 104, 440, 911
HpyCH4III ACNGT 3 cut(s) 55, 572, 1071
HpyCH4IV ACGT 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 178, 622, 841, 1088
HpyF3I CTNAG 5 cut(s) 233, 677, 804, 1156, 1209
HpySE526I ACGT 1 cut(s) 304
Kzo9I GATC 6 cut(s) 15, 342, 673, 932, 1159, 1264
LmnI GCTCC 6 cut(s) 122, 164, 364, 526, 757, 958
Lsp1109I GCAGC 3 cut(s) 637, 799, 856
LweI GCATC 4 cut(s) 509, 882, 1301, 1337
MabI ACCWGGT 1 cut(s) 1057
MaeI CTAG 3 cut(s) 270, 546, 1384
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 4 cut(s) 31, 493, 1305, 1358
MalI GATC 6 cut(s) 17, 344, 675, 934, 1161, 1266
MbiI CCGCTC 2 cut(s) 159, 359
MboI GATC 6 cut(s) 15, 342, 673, 932, 1159, 1264
MboII GAAGA 6 cut(s) 37, 325, 337, 397, 529, 581
MflI RGATCY 6 cut(s) 15, 342, 673, 932, 1159, 1264
MhlI GDGCHC 4 cut(s) 239, 523, 754, 955
MlsI TGGCCA 2 cut(s) 104, 1377
MluCI AATT 7 cut(s) 395, 462, 553, 654, 853, 871, 1048
MluNI TGGCCA 2 cut(s) 104, 1377
MlyI GAGTC 2 cut(s) 773, 802
MmeI TCCRAC 1 cut(s) 43
Mox20I TGGCCA 2 cut(s) 104, 1377
Mph1103I ATGCAT 1 cut(s) 837
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 2 cut(s) 104, 1377
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 3 cut(s) 192, 411, 570
Msp20I TGGCCA 2 cut(s) 104, 1377
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 2 cut(s) 98, 768
MspR9I CCNGG 6 cut(s) 642, 690, 1029, 1059, 1119, 1247
Mva1269I GAATGC 2 cut(s) 835, 1084
MvaI CCWGG 6 cut(s) 642, 690, 1029, 1059, 1119, 1247
MwoI GCNNNNNNNGC 5 cut(s) 128, 178, 622, 841, 1088
NdeII GATC 6 cut(s) 15, 342, 673, 932, 1159, 1264
NlaIV GGNNCC 3 cut(s) 118, 1009, 1266
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 2 cut(s) 1305, 1358
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 2 cut(s) 251, 425
OliI CACNNNNGTG 1 cut(s) 192
PceI AGGCCT 1 cut(s) 703
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 592
PctI GAATGC 2 cut(s) 835, 1084
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 7 cut(s) 278, 316, 401, 467, 506, 740, 977
PflMI CCANNNNNTGG 3 cut(s) 647, 929, 947
PkrI GCNGC 8 cut(s) 64, 130, 155, 158, 358, 627, 789, 846
PleI GAGTC 2 cut(s) 772, 802
PpsI GAGTC 2 cut(s) 772, 802
PpuMI RGGWCCY 1 cut(s) 1008
PshAI GACNNNNGTC 1 cut(s) 1365
Psp124BI GAGCTC 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 1008
Psp6I CCWGG 6 cut(s) 640, 688, 1027, 1057, 1117, 1245
PspGI CCWGG 6 cut(s) 640, 688, 1027, 1057, 1117, 1245
PspN4I GGNNCC 3 cut(s) 118, 1009, 1266
PspPI GGNCC 1 cut(s) 1008
PspPPI RGGWCCY 1 cut(s) 1008
PstI CTGCAG 1 cut(s) 1138
PsuI RGATCY 6 cut(s) 15, 342, 673, 932, 1159, 1264
RsaI GTAC 3 cut(s) 885, 969, 1038
RsaNI GTAC 3 cut(s) 884, 968, 1037
RseI CAYNNNNRTG 3 cut(s) 192, 411, 570
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 8 cut(s) 63, 129, 154, 157, 357, 626, 788, 845
Sau3AI GATC 6 cut(s) 15, 342, 673, 932, 1159, 1264
Sau96I GGNCC 1 cut(s) 1008
SchI GAGTC 2 cut(s) 773, 802
ScrFI CCNGG 6 cut(s) 642, 690, 1029, 1059, 1119, 1247
SduI GDGCHC 4 cut(s) 239, 523, 754, 955
SexAI ACCWGGT 1 cut(s) 1057
SfaNI GCATC 4 cut(s) 509, 882, 1301, 1337
SfcI CTRYAG 2 cut(s) 434, 1134
SinI GGWCC 1 cut(s) 1008
SmiMI CAYNNNNRTG 3 cut(s) 192, 411, 570
SmlI CTYRAG 1 cut(s) 1164
SmoI CTYRAG 1 cut(s) 1164
Sse9I AATT 7 cut(s) 395, 462, 553, 654, 853, 871, 1048
SseBI AGGCCT 1 cut(s) 703
SspMI CTAG 3 cut(s) 270, 546, 1384
SstI GAGCTC 1 cut(s) 523
StuI AGGCCT 1 cut(s) 703
StyD4I CCNGG 6 cut(s) 640, 688, 1027, 1057, 1117, 1245
StyI CCWWGG 4 cut(s) 105, 527, 611, 1268
TaaI ACNGT 3 cut(s) 55, 572, 1071
TaiI ACGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 1369
TasI AATT 7 cut(s) 395, 462, 553, 654, 853, 871, 1048
TatI WGTACW 1 cut(s) 883
TauI GCSGC 5 cut(s) 65, 131, 156, 159, 359
TfiI GAWTC 7 cut(s) 278, 316, 401, 467, 506, 740, 977
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 2 cut(s) 1305, 1358
TseI GCWGC 3 cut(s) 625, 787, 844
Tsp45I GTSAC 2 cut(s) 1305, 1358
TspDTI ATGAA 4 cut(s) 315, 337, 732, 1061
TspGWI ACGGA 1 cut(s) 493
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 3 cut(s) 647, 929, 947
VpaK11BI GGWCC 1 cut(s) 1008
XapI RAATTY 4 cut(s) 395, 553, 654, 1048
XceI RCATGY 2 cut(s) 251, 425
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 3 cut(s) 270, 546, 1384
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.