Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012517

Physical Location & Seq

Genomic Coordinates Reverse (-)

5520042 .. 5521664

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0069900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGAAGTGGAAACCATATCGGCCAAGACAACGAAAGCTTGAATCAAGAGAACAGGTAGATAGAGGCCGGAAAAAGAGGCAAATGGGGAAGCTTTGCAAATTGTCAGAAGAGATGGTCGGGCAATTCCTTTCAAGATTGCCTCCTAAAGCATTGATGCGCTTCAAATGTATTCATAAGTCGTGGTACAATCTAATAACTTCCCCTAGCTTTATAGCCAAGAACCTTTCTAATTCCAAGAACAACAAGTTTGCGTCCACCACTAGAATCCTTTTCAAGCGTACTGTCCTCAAGGACATTAAGGATAAGAATGAAATATTTTATGTCCTTAGGGACAACAACAATGATAGGAGAGACATTTTCCTTTCTTTACTTGATCTTTGCAACGATAATGATGGTGATGACCAAAACCTTCATTCTGTTGTCGACGACCTTATTGTTCCACTTCCTTTTAGTATATGTCCCTTTAGTTTACAAATTGCAGGTCACTGTGATGGGCTTATTTGTCTTGTTAATATTGTTAATGAGGAGGTTGCTTTGTGCAATCCAGCGATAAAGGAATTCAAATTTCTTCCTAGGTCTTCCCTTCTTCTTCCTCGCAGACATCCAGAAGATGATGACGGCATAGAATCGGATGTAAATGCTGTCGGATTTGGCTATGATTCTAAAACTCAAGATTACAAGATTGTTAGAGTTATAACATATATTACAGGGATTGCTTATACACTTCCTTCTAAAGCAGAGGTGTACACATTGAGTTCTCATTCTTGGAGAGAGATCAAAATTGATAAAGAATGTCATGTCTTTTGGACTCCTTCATTTGAGATACACTTCAGGGGAATTTATTATTGGAGTGCACTGACTTATCCTACTCCAGGAGCGGATAAGGAAGCCATCTTTGCATTTGATATGAGTGAAGAGACATTTGAAGAGATACCGATTCCAGATGGTATTTGTGCCAGAGACGGTATTATTAAGTTCCTTGCTGTGTGGAAAGAATCTGTTGCTCTTATTTCTTGCAAAGGAGATGGTCCTAAATCCTTCGATATATGGGTAATGGATGACTCTAGTGGGATTAAAGGTTCATGGACAAAACACTCGGTCATTGGACCTATAGAATGCGAGATTCCATTGGTATTTTGGAAGAGTGATGAGCTTCTTTTGGTTATCTCTGATGGACGTGTGGTCTCCTATCACCTTGGTAACAAAACTATCAAGTATCTTCCGATTCATGGCGTGGAAGATCCCCAATACATCCAAGCTGTTGTTTGCGTAAATAGTATGATTTCAGTTAAGAAGACCAAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006464 GO:0006725 GO:0006807 GO:0007162 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030100 GO:0030155 GO:0030334 GO:0030335 GO:0032259 GO:0032446 GO:0032879 GO:0032991 GO:0034641 GO:0034708 GO:0036211 GO:0036396 GO:0040012 GO:0040017 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045293 GO:0045807 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051270 GO:0051272 GO:0060627 GO:0065007 GO:0070647 GO:0071704 GO:0080009 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:2000145 GO:2000147

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

435

Amino Acids

49.74

Weight (kDa)

8.14

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	31 - 70	9.4e-06	F-box domain
FBA_3	PF08268	140 - 371	4e-23	F-box associated beta propeller domain
FBA_1	PF07734	155 - 395	2.6e-25	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01160 AT5G01160
fragaria_vesca	FvH4_6g12190 FvH4_6g12190
malus_domestica	MD04G1145200.v1.1 MD12G1159000.v1.1
prunus_persica	Prupe.6G269500_v2.0.a1
pyrus_communis	pycom04g13140 pycom12g15090
rosa_chinensis	RchiOBHm_Chr3g0463991
rosa_laevigata	RLG00000024729
rosa_multiflora	Rmu_sc0006492.1_g000009
rosa_roxburghii	Rroxscaffold_6G00416080
rosa_rugosa	Rorug03G0069900
rosa_samantha	Rh3AG126800 Rh3BG130700 Rh3CG133300 Rh3DG132200
rosa_wichuraiana	Rw3G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	878
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	1 cut(s)	878
AclWI	GGATC	1 cut(s)	1235
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	3 cut(s)	557, 563, 837
AcuI	CTGAAG	1 cut(s)	814
AfaI	GTAC	3 cut(s)	185, 280, 746
AfiI	CCNNNNNNNGG	2 cut(s)	872, 1229
AflIII	ACRYGT	1 cut(s)	1177
AgsI	TTSAA	6 cut(s)	41, 132, 163, 274, 562, 926
AhdI	GACNNNNNGTC	1 cut(s)	1181
AjiI	CACGTC	1 cut(s)	1178
AjnI	CCWGG	1 cut(s)	871
AjuI	GAANNNNNNNTTGG	2 cut(s)	829, 861
AloI	GAACNNNNNNTCC	2 cut(s)	1063, 1095
AluBI	AGCT	5 cut(s)	37, 91, 207, 1153, 1259
AluI	AGCT	5 cut(s)	37, 91, 207, 1153, 1259
Alw21I	GWGCWC	1 cut(s)	856
Alw26I	GTCTC	4 cut(s)	345, 911, 954, 1189
Alw44I	GTGCAC	1 cut(s)	852
AlwI	GGATC	1 cut(s)	1235
AoxI	GGCC	2 cut(s)	20, 64
ApaLI	GTGCAC	1 cut(s)	852
ApoI	RAATTY	3 cut(s)	557, 563, 837
ArsI	GACNNNNNNTTYG	2 cut(s)	466, 498
AspA2I	CCTAGG	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	1028, 1106
AsuHPI	GGTGA	2 cut(s)	407, 1184
AvaII	GGWCC	2 cut(s)	1028, 1106
AvrII	CCTAGG	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	856
BbsI	GAAGAC	2 cut(s)	570, 1301
Bbv12I	GWGCWC	1 cut(s)	856
BccI	CCATC	7 cut(s)	106, 386, 485, 899, 938, 1019, 1166
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	1 cut(s)	873
BcoDI	GTCTC	4 cut(s)	345, 911, 954, 1189
BfaI	CTAG	4 cut(s)	204, 261, 573, 1065
BfmI	CTRYAG	1 cut(s)	1110
BfuAI	ACCTGC	1 cut(s)	470
BlnI	CCTAGG	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	873
Bme18I	GGWCC	2 cut(s)	1028, 1106
BmeRI	GACNNNNNGTC	1 cut(s)	1181
BmgBI	CACGTC	1 cut(s)	1178
BmgT120I	GGNCC	2 cut(s)	1028, 1106
BmrFI	CCNGG	1 cut(s)	873
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	2 cut(s)	570, 1301
BpmI	CTGGAG	1 cut(s)	855
BpuEI	CTTGAG	2 cut(s)	272, 654
BsaI	GGTCTC	1 cut(s)	1189
BsaJI	CCNNGG	2 cut(s)	572, 1195
Bsc4I	CCNNNNNNNGG	2 cut(s)	872, 1229
Bse21I	CCTNAGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	873
BseDI	CCNNGG	2 cut(s)	572, 1195
BseGI	GGATG	4 cut(s)	601, 637, 1063, 1251
BseLI	CCNNNNNNNGG	2 cut(s)	872, 1229
BseRI	GAGGAG	1 cut(s)	539
BseSI	GKGCMC	1 cut(s)	856
BshFI	GGCC	2 cut(s)	22, 66
BsiHKAI	GWGCWC	1 cut(s)	856
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	2 cut(s)	344, 444
BslI	CCNNNNNNNGG	2 cut(s)	872, 1229
BsmAI	GTCTC	4 cut(s)	345, 911, 954, 1189
BsmBI	CGTCTC	1 cut(s)	954
BsmFI	GGGAC	2 cut(s)	344, 444
BsmI	GAATGC	1 cut(s)	1121
BsnI	GGCC	2 cut(s)	22, 66
Bso31I	GGTCTC	1 cut(s)	1189
Bsp1286I	GDGCHC	1 cut(s)	856
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	3 cut(s)	373, 774, 1240
BspACI	CCGC	1 cut(s)	878
BspANI	GGCC	2 cut(s)	22, 66
BspMI	ACCTGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	1235
BspTNI	GGTCTC	1 cut(s)	1189
BsrBI	CCGCTC	1 cut(s)	878
BsrGI	TGTACA	1 cut(s)	744
BssECI	CCNNGG	2 cut(s)	572, 1195
BssMI	GATC	3 cut(s)	373, 774, 1240
BssT1I	CCWWGG	2 cut(s)	572, 1195
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	3 cut(s)	283, 488, 965
Bst6I	CTCTTC	4 cut(s)	102, 909, 921, 1136
BstAUI	TGTACA	1 cut(s)	744
BstDEI	CTNAG	1 cut(s)	326
BstENI	CCTNNNNNAGG	1 cut(s)	870
BstF5I	GGATG	4 cut(s)	601, 637, 1063, 1251
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	3 cut(s)	376, 777, 1243
BstMAI	GTCTC	4 cut(s)	345, 911, 954, 1189
BstMBI	GATC	3 cut(s)	373, 774, 1240
BstMWI	GCNNNNNNNGC	1 cut(s)	896
BstNI	CCWGG	1 cut(s)	873
BstSCI	CCNGG	1 cut(s)	871
BstSFI	CTRYAG	1 cut(s)	1110
BstSLI	GKGCMC	1 cut(s)	856
BstV2I	GAAGAC	2 cut(s)	570, 1301
BstX2I	RGATCY	1 cut(s)	1240
BstYI	RGATCY	1 cut(s)	1240
Bsu36I	CCTNAGG	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	22, 66
BtrI	CACGTC	1 cut(s)	1178
BtsCI	GGATG	4 cut(s)	601, 637, 1063, 1251
BtsIMutI	CAGTG	2 cut(s)	484, 854
BveI	ACCTGC	1 cut(s)	470
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	1028, 1106
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	3 cut(s)	184, 279, 745
CviAII	CATG	3 cut(s)	797, 1083, 1229
CviQI	GTAC	3 cut(s)	184, 279, 745
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	3 cut(s)	375, 776, 1242
DpnII	GATC	3 cut(s)	373, 774, 1240
DriI	GACNNNNNGTC	1 cut(s)	1181
EaeI	YGGCCR	1 cut(s)	20
Eam1104I	CTCTTC	4 cut(s)	102, 909, 921, 1136
Eam1105I	GACNNNNNGTC	1 cut(s)	1181
EarI	CTCTTC	4 cut(s)	102, 909, 921, 1136
Eco130I	CCWWGG	2 cut(s)	572, 1195
Eco31I	GGTCTC	1 cut(s)	1189
Eco47I	GGWCC	2 cut(s)	1028, 1106
Eco57I	CTGAAG	1 cut(s)	814
Eco81I	CCTNAGG	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	870
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	871
EcoT14I	CCWWGG	2 cut(s)	572, 1195
ErhI	CCWWGG	2 cut(s)	572, 1195
Esp3I	CGTCTC	1 cut(s)	954
FaeI	CATG	3 cut(s)	800, 1086, 1232
FaqI	GGGAC	2 cut(s)	344, 444
FatI	CATG	3 cut(s)	796, 1082, 1228
FblI	GTMKAC	1 cut(s)	423
FokI	GGATG	4 cut(s)	588, 644, 1070, 1238
FspBI	CTAG	4 cut(s)	204, 261, 573, 1065
GlaI	GCGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	2 cut(s)	22, 66
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	800, 1086, 1232
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	2 cut(s)	35, 89
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	2 cut(s)	407, 1184
Hpy166II	GTNNAC	6 cut(s)	255, 424, 470, 745, 747, 854
Hpy188I	TCNGA	5 cut(s)	106, 631, 647, 1171, 1224
Hpy188III	TCNNGA	5 cut(s)	45, 132, 605, 671, 941
Hpy8I	GTNNAC	6 cut(s)	255, 424, 470, 745, 747, 854
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	5 cut(s)	419, 593, 738, 822, 1048
HpyCH4III	ACNGT	3 cut(s)	283, 488, 965
HpyCH4IV	ACGT	1 cut(s)	1177
HpyCH4V	TGCA	7 cut(s)	96, 381, 479, 540, 854, 899, 1017
HpyF10VI	GCNNNNNNNGC	1 cut(s)	896
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	1177
Hsp92II	CATG	3 cut(s)	800, 1086, 1232
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	373, 774, 1240
LmnI	GCTCC	1 cut(s)	875
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	4 cut(s)	204, 261, 573, 1065
MaeII	ACGT	1 cut(s)	1177
MaeIII	GTNAC	2 cut(s)	482, 1199
MalI	GATC	3 cut(s)	375, 776, 1242
MbiI	CCGCTC	1 cut(s)	878
MboI	GATC	3 cut(s)	373, 774, 1240
MflI	RGATCY	1 cut(s)	1240
MhlI	GDGCHC	1 cut(s)	856
MluCI	AATT	8 cut(s)	98, 122, 229, 474, 557, 563, 780, 837
MlyI	GAGTC	2 cut(s)	802, 1055
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	8 cut(s)	56, 69, 150, 296, 517, 520, 603, 733
MseI	TTAA	6 cut(s)	297, 510, 519, 972, 1074, 1290
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	873
Mva1269I	GAATGC	1 cut(s)	1121
MvaI	CCWGG	1 cut(s)	873
MwoI	GCNNNNNNNGC	1 cut(s)	896
NdeII	GATC	3 cut(s)	373, 774, 1240
NlaIII	CATG	3 cut(s)	800, 1086, 1232
NmuCI	GTSAC	1 cut(s)	482
PctI	GAATGC	1 cut(s)	1121
PfeI	GAWTC	8 cut(s)	41, 264, 626, 659, 937, 995, 1123, 1225
PfoI	TCCNGGA	1 cut(s)	871
PleI	GAGTC	2 cut(s)	802, 1055
PpsI	GAGTC	2 cut(s)	802, 1055
PsiI	TTATAA	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	871
PspGI	CCWGG	1 cut(s)	871
PspPI	GGNCC	2 cut(s)	1028, 1106
PsuI	RGATCY	1 cut(s)	1240
RsaI	GTAC	3 cut(s)	185, 280, 746
RsaNI	GTAC	3 cut(s)	184, 279, 745
RseI	CAYNNNNRTG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	422
SaqAI	TTAA	6 cut(s)	297, 510, 519, 972, 1074, 1290
Sau3AI	GATC	3 cut(s)	373, 774, 1240
Sau96I	GGNCC	2 cut(s)	1028, 1106
SchI	GAGTC	2 cut(s)	802, 1055
ScrFI	CCNGG	1 cut(s)	873
SduI	GDGCHC	1 cut(s)	856
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	1110
SinI	GGWCC	2 cut(s)	1028, 1106
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	287, 669
SmoI	CTYRAG	2 cut(s)	287, 669
Sse9I	AATT	8 cut(s)	98, 122, 229, 474, 557, 563, 780, 837
SsiI	CCGC	1 cut(s)	878
SspI	AATATT	2 cut(s)	315, 514
SspMI	CTAG	4 cut(s)	204, 261, 573, 1065
StyD4I	CCNGG	1 cut(s)	871
StyI	CCWWGG	2 cut(s)	572, 1195
TaaI	ACNGT	3 cut(s)	283, 488, 965
TaiI	ACGT	1 cut(s)	1180
TaqI	TCGA	2 cut(s)	423, 1041
TaqII	GACCGA	1 cut(s)	1087
TasI	AATT	8 cut(s)	98, 122, 229, 474, 557, 563, 780, 837
TatI	WGTACW	1 cut(s)	744
TfiI	GAWTC	8 cut(s)	41, 264, 626, 659, 937, 995, 1123, 1225
Tru1I	TTAA	6 cut(s)	297, 510, 519, 972, 1074, 1290
Tru9I	TTAA	6 cut(s)	297, 510, 519, 972, 1074, 1290
TscAI	CASTG	2 cut(s)	491, 861
TseFI	GTSAC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	7 cut(s)	17, 161, 324, 401, 804, 1071, 1217
TspRI	CASTG	2 cut(s)	491, 861
VneI	GTGCAC	1 cut(s)	852
VpaK11BI	GGWCC	2 cut(s)	1028, 1106
XagI	CCTNNNNNAGG	1 cut(s)	870
XapI	RAATTY	3 cut(s)	557, 563, 837
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1134
XmaJI	CCTAGG	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	4 cut(s)	204, 261, 573, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.